Carg12677 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12677
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Seed maturation protein
Location	Cucurbita_argyrosperma_scaffold_021 : 561085 .. 562198 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGAAGAACTTCAAAAATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTTCAAGAGAAGGTATAGTTTGAGCTTATCCCTTTCAAATGTGTTTATAAGTCATACGAGACATTTTGAAGAAATCTAAAGTAAATCTACGAGAGATTATACTCAAAGTGGACAATATCTTCGATTGTGGGGACTCGTTATTCATGTTTGTTCATGTTTATCGGAGCCATAACCTTAATCTAGCCAAGGACTCCAAAAAAACGAGTCGAGCCTCGATTAAGGGAGGCTTTTCGAGGGCTACGTAGACCTCAAGGGAGGCTCTATCGTGTACTTCCTTCCACTCTTGAAGATCATAAATTTATAAGTGAGAAATGCTATCTTTATTGGACGGAAATTTCAAATGAAAGCTATGAGAACTTATGCTCAAAGTAAACAATATCATACCGTAGTACGAGATAAAACTGATTGAATAATGCTCTCTTTTTTACTGATTATATAGATGGAGAAGGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGAACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAAGATGGGAAGTTTGTTGGGTTTGGTACAATAATAAGTGGGCTTCGTGTTGTTTTAAGGTTGAAGTCCAACGAGTTTGTGTTTGGTTTTAGGGTTTTTATGTTATGTATTGTTGTTTATGGTTTGGATTGTTTTGTTTTGTTTTGTTTTGTT

mRNA sequence

CAAAGAAGAACTTCAAAAATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTTCAAGAGAAGATGGAGAAGGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGAACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAAGATGGGAAGTTTGTTGGGTTTGGTACAATAATAAGTGGGCTTCGTGTTGTTTTAAGGTTGAAGTCCAACGAGTTTGTGTTTGGTTTTAGGGTTTTTATGTTATGTATTGTTGTTTATGGTTTGGATTGTTTTGTTTTGTTTTGTTTTGTT

Coding sequence (CDS)

ATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTTCAAGAGAAGATGGAGAAGGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGAACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAA

Protein sequence

MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS

Homology

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: XP_022924969.1 (late embryogenesis abundant protein 46 [Cucurbita moschata] >XP_023518250.1 late embryogenesis abundant protein 46 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH
Sbjct: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60

Query: 61  EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHG 120
           EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHG
Sbjct: 61  EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNV GGGGDATRYSTGGGYS
Sbjct: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNV-GGGGDATRYSTGGGYS 171

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: XP_022966467.1 (late embryogenesis abundant protein 46 [Cucurbita maxima])

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 160/172 (93.02%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH
Sbjct: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60

Query: 61  EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHG 120
           E  XXXXXXXXXXXXXXXXXXXXXX      XXXXXXYSTTGAQGYTTGTQQMSAVPGHG
Sbjct: 61  EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSTTGAQGYTTGTQQMSAVPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQPT +VTEGVVGTHPIGHQTGTGRTTTAHNPNV  GGGDATRYSTGGGYS
Sbjct: 121 TGQPTDRVTEGVVGTHPIGHQTGTGRTTTAHNPNV--GGGDATRYSTGGGYS 170

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: XP_004146409.1 (PREDICTED: 18 kDa seed maturation protein [Cucumis sativus] >KGN54793.1 hypothetical protein Csa_4G499300 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 7.5e-34
Identity = 130/174 (74.71%), Postives = 135/174 (77.59%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK A+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  --EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPG 120
                XXXXXXXXXXXXXXXXXXXXXX      XXXXXX              Q SA+PG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTSALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           HGTGQPTG VTEGVVG HPIG +TGTGRTTTAHNP  GGG G  T   TGG Y+
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: XP_009369595.1 (PREDICTED: 18 kDa seed maturation protein [Pyrus x bretschneideri])

HSP 1 Score: 151.4 bits (381), Expect = 2.9e-33
Identity = 98/173 (56.65%), Postives = 112/173 (64.74%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKN MESMKE+AANVAASA +GM+KTKATVQEK+EK+ + DP+ K++A  KK+ +I 
Sbjct: 1   MQSGKNTMESMKEAAANVAASATSGMEKTKATVQEKVEKMKSSDPVEKDMAARKKEERIV 60

Query: 61  EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHG 120
           EAE                      +           YSTTGA G  TGT QMSA+PGHG
Sbjct: 61  EAEVNKREAMEQNAAARRDVAVSTGYTATGAGTGTRTYSTTGAAGQPTGTHQMSALPGHG 120

Query: 121 TGQPTGQVTEGVVG-THPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQP GQVTEGVV   HPIG  TGTGR TT HN NV   GG+AT Y TGG YS
Sbjct: 121 TGQPAGQVTEGVVAEAHPIGTNTGTGR-TTGHNTNV---GGNATNYGTGGTYS 169

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: XP_008442129.1 (PREDICTED: 18 kDa seed maturation protein [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 126/171 (73.68%), Postives = 129/171 (75.44%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK AMES+KESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAMESVKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  --EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPG 120
                XXXXXXXXXXXXXXXXXXXXXX      XXXXXX                 A+PG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGG 170
           HGTGQPTG VTEGVVG HPIG  TGTGRTTTAHNP  GG  G  T   TGG
Sbjct: 121 HGTGQPTGPVTEGVVGVHPIGTATGTGRTTTAHNPLAGGETGYGTGTRTGG 171

[Close]

BLAST of Carg12677 vs. TAIR10
Match: AT5G06760.1 (Late Embryogenesis Abundant 4-5)

HSP 1 Score: 87.8 bits (216), Expect = 7.0e-18
Identity = 75/165 (45.45%), Postives = 94/165 (56.97%), Query Frame = 0


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAEXXXX 67
           M+SMKE+A+N+AASAK+GMDKTKAT++EK EK+  RDP+ K++A + K+ KI++AE    
Sbjct: 1   MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAE---- 60

Query: 68  XXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHGTGQPTGQ 127
                                   XXXXXX+STTG                      T +
Sbjct: 61  -MQKRETRQHNAAMKEAAXXXXXXXXXXXXHSTTGQXXXXXXXXXXXXXXXXXXXXLTDR 120

Query: 128 VTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           V EG   T PIG  TGTGR TTAHN +VGGGG  AT Y TGGGY+
Sbjct: 121 VVEGTAVTDPIGRNTGTGR-TTAHNTHVGGGG--ATGYGTGGGYT 157

[Close]

BLAST of Carg12677 vs. Swiss-Prot
Match: sp|Q01417|PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 93/173 (53.76%), Postives = 108/173 (62.43%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+A N+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KK+AK++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAEXXXXXXXXXXXXXXXXXXXXXXHG----MHPTXXXXXXYSTTGAQGYTTGTQQMSAV 120
           +AE                       G        XXXXXX STTG  G   G  Q SA+
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAGHMGHXXXXXXXXXXXXXXSTTGEYGQPMGAHQTSAM 120

Query: 121 PGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGG 170
           PGHGTGQPTG VTEGVVG+HPIG   G G T TAHN   GG   D   Y TGG
Sbjct: 121 PGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPND-YGYGTGG 172

[Close]

BLAST of Carg12677 vs. Swiss-Prot
Match: sp|Q9FG31|LEA46_ARATH (Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-16
Identity = 75/165 (45.45%), Postives = 94/165 (56.97%), Query Frame = 0


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAEXXXX 67
           M+SMKE+A+N+AASAK+GMDKTKAT++EK EK+  RDP+ K++A + K+ KI++AE    
Sbjct: 1   MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAE---- 60

Query: 68  XXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHGTGQPTGQ 127
                                   XXXXXX+STTG                      T +
Sbjct: 61  -MQKRETRQHNAAMKEAAXXXXXXXXXXXXHSTTGQXXXXXXXXXXXXXXXXXXXXLTDR 120

Query: 128 VTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           V EG   T PIG  TGTGR TTAHN +VGGGG  AT Y TGGGY+
Sbjct: 121 VVEGTAVTDPIGRNTGTGR-TTAHNTHVGGGG--ATGYGTGGGYT 157

[Close]

BLAST of Carg12677 vs. Swiss-Prot
Match: sp|Q00747|LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1  MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
          MQ+GK+A           A++AKAGM+KTKA VQEK E++T RDPL KE+A EKK+ ++ 
Sbjct: 1  MQTGKDA-----------ASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVA 52

Query: 61 EAE 64
           AE
Sbjct: 61 AAE 52

[Close]

BLAST of Carg12677 vs. TrEMBL
Match: tr|A0A0A0KZ59|A0A0A0KZ59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499300 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.0e-34
Identity = 130/174 (74.71%), Postives = 135/174 (77.59%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK A+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  --EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPG 120
                XXXXXXXXXXXXXXXXXXXXXX      XXXXXX              Q SA+PG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTSALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           HGTGQPTG VTEGVVG HPIG +TGTGRTTTAHNP  GGG G  T   TGG Y+
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

[Close]

BLAST of Carg12677 vs. TrEMBL
Match: tr|A0A1S3B5R4|A0A1S3B5R4_CUCME (18 kDa seed maturation protein OS=Cucumis melo OX=3656 GN=LOC103486081 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.7e-31
Identity = 126/171 (73.68%), Postives = 129/171 (75.44%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK AMES+KESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAMESVKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  --EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPG 120
                XXXXXXXXXXXXXXXXXXXXXX      XXXXXX                 A+PG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGG 170
           HGTGQPTG VTEGVVG HPIG  TGTGRTTTAHNP  GG  G  T   TGG
Sbjct: 121 HGTGQPTGPVTEGVVGVHPIGTATGTGRTTTAHNPLAGGETGYGTGTRTGG 171

[Close]

BLAST of Carg12677 vs. TrEMBL
Match: tr|Q9FT33|Q9FT33_GLYTO (Seed maturation protein OS=Glycine tomentella OX=44015 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.7e-30
Identity = 106/172 (61.63%), Postives = 120/172 (69.77%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KK AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKDAKMS 60

Query: 61  EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHG 120
           +AE  XXXXXXXXXXXXXXX        H T      YSTTG  G   G  Q SA+PGHG
Sbjct: 61  QAELDXXXXXXXXXXXXXXXTAGHMGQGHHT-PGTATYSTTGEHGQPMGAHQTSAMPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQPTG VTEGVVG+HPIG   G G T TAHN   GG   D   Y TGG Y+
Sbjct: 121 TGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPND-YGYGTGGTYN 170

[Close]

BLAST of Carg12677 vs. TrEMBL
Match: tr|Q9FNW9|Q9FNW9_GLYTA (Seed maturation protein LEA 4 OS=Glycine tabacina OX=44016 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.7e-30
Identity = 91/169 (53.85%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHG 120
           +AE   X                     H T      YSTTG  G   G  Q SA+PGHG
Sbjct: 61  QAELDKXAARQHNTAAKQAATAGHMGQGHNT-PGTATYSTTGEHGQPMGAHQTSAMPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGG 170
           TGQPTG VTEGVVG+HPIG   G G T TAHN   GG   D   Y TGG
Sbjct: 121 TGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPND-YGYGTGG 167

[Close]

BLAST of Carg12677 vs. TrEMBL
Match: tr|V7CVX7|V7CVX7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G143100g PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.7e-30
Identity = 88/172 (51.16%), Postives = 109/172 (63.37%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+A+N+ ASAKAGM+KTKATVQEK E++TARDPL KE+A +KK+A+++
Sbjct: 1   MQGGKKAGESVKETASNMGASAKAGMEKTKATVQEKAERLTARDPLQKEVATQKKEARVN 60

Query: 61  EAEXXXXXXXXXXXXXXXXXXXXXXHGMHPTXXXXXXYSTTGAQGYTTGTQQMSAVPGHG 120
           +AE                         +        +S TG  G+ TG  Q SA+PGHG
Sbjct: 61  QAELDKQAVREH----------------NAAAKQSATHSATGEHGHHTGLHQTSAMPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQPTG VTEGVVG+HPIG   G G TTTAHN + GG   D   Y TGG Y+
Sbjct: 121 TGQPTGHVTEGVVGSHPIGTNRGPGGTTTAHNTHAGGNPND-YGYGTGGTYN 155

The following BLAST results are available for this feature:

BLAST of Carg12677 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924969.1	7.0e-64	99.42	late embryogenesis abundant protein 46 [Cucurbita moschata] >XP_023518250.1 late...	[more]
XP_022966467.1	1.6e-55	93.02	late embryogenesis abundant protein 46 [Cucurbita maxima]	[more]
XP_004146409.1	7.5e-34	74.71	PREDICTED: 18 kDa seed maturation protein [Cucumis sativus] >KGN54793.1 hypothet...	[more]
XP_009369595.1	2.9e-33	56.65	PREDICTED: 18 kDa seed maturation protein [Pyrus x bretschneideri]	[more]
XP_008442129.1	1.0e-30	73.68	PREDICTED: 18 kDa seed maturation protein [Cucumis melo]	[more]

BLAST of Carg12677 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06760.1	7.0e-18	45.45	Late Embryogenesis Abundant 4-5	[more]

BLAST of Carg12677 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q01417\|PM1_SOYBN	1.7e-29	53.76	18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1	[more]
sp\|Q9FG31\|LEA46_ARATH	1.3e-16	45.45	Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 ...	[more]
sp\|Q00747\|LE25_SOLLC	3.5e-06	52.38	Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1	[more]

BLAST of Carg12677 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZ59\|A0A0A0KZ59_CUCSA	5.0e-34	74.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499300 PE=4 SV=1	[more]
tr\|A0A1S3B5R4\|A0A1S3B5R4_CUCME	6.7e-31	73.68	18 kDa seed maturation protein OS=Cucumis melo OX=3656 GN=LOC103486081 PE=4 SV=1	[more]
tr\|Q9FT33\|Q9FT33_GLYTO	5.7e-30	61.63	Seed maturation protein OS=Glycine tomentella OX=44015 PE=2 SV=1	[more]
tr\|Q9FNW9\|Q9FNW9_GLYTA	9.7e-30	53.85	Seed maturation protein LEA 4 OS=Glycine tabacina OX=44016 PE=4 SV=1	[more]
tr\|V7CVX7\|V7CVX7_PHAVU	9.7e-30	51.16	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G143100g PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009793	embryo development ending in seed dormancy

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12677-RA	Carg12677-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..172
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5	coord: 1..168
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 8..78 e-value: 2.0E-22 score: 79.6
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 1..168
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PRODOM	PD005538		coord: 8..78 e-value: 2.0E-9 score: 147.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12677	Cla011668	Watermelon (97103) v1	carwmB0277
Carg12677	Csa4G499300	Cucumber (Chinese Long) v2	carcuB0309
Carg12677	MELO3C008930	Melon (DHL92) v3.5.1	carmeB0286
Carg12677	ClCG04G002110	Watermelon (Charleston Gray)	carwcgB0276
Carg12677	CSPI04G20470	Wild cucumber (PI 183967)	carcpiB0319
Carg12677	CmaCh07G012440	Cucurbita maxima (Rimu)	carcmaB0398
Carg12677	CmoCh07G012900	Cucurbita moschata (Rifu)	carcmoB0395
Carg12677	CsGy4G019010	Cucumber (Gy14) v2	carcgybB0301
Carg12677	MELO3C008930.2	Melon (DHL92) v3.6.1	carmedB0297
Carg12677	CsaV3_4G030630	Cucumber (Chinese Long) v3	carcucB0319
Carg12677	Bhi03G002346	Wax gourd	carwgoB0374

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12677	Watermelon (97103) v2	carwmbB0292
Carg12677	Cucurbita pepo (Zucchini)	carcpeB0400
Carg12677	Wild cucumber (PI 183967)	carcpiB0313
Carg12677	Cucumber (Chinese Long) v2	carcuB0308
Carg12677	Melon (DHL92) v3.5.1	carmeB0282
Carg12677	Melon (DHL92) v3.6.1	carmedB0294
Carg12677	Watermelon (Charleston Gray)	carwcgB0273
Carg12677	Watermelon (97103) v1	carwmB0272