Cla011668 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011668
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Seed maturation protein LEA 4 (AHRD V1 ***- Q9FNW3_GLYTO); contains Interpro domain(s) IPR005513 Late embryogenesis abundant (LEA) group 1
Location	Chr4 : 5852307 .. 5852980 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCAGGAAAGAAGGCAATGGAATCCATGAAGGAATCGGCTGCGAATGTTGCAGCCTCCGCCAAGGCCGGCATGGACAAGACTAAAGCCACTGTGCAAGAGAAGGTTTTTTTTTCTCCTCACTTCCATTTCTTTTCTTTTTAAATTTTAATTGACAGAAATTTTACATTCAAATTCAAGACTCAAGACTCAGAAAATATATCTGCACAAAAGAGCTTTTCTGAATGCTGTTTTTTTTTTTTTTATAATTGGTTTGATAGATGGAGAAAGTTACGGCCCATGATCCGTTGGCAAAAGAAATTGCAGAGGAGAAGAAACAAGCAAAGATCCACGAGGCAGAGCTCCAGAAACAGGAGGCGCGTCAGCACAACGCCGCTGTCAGACAGTCTGCTACGGCGGCAGCCACACACGGGACACACCCAACAACCCACCCCACCGCCACATACTCCACCACTGGAGCCCATGGCTACACCACTGGGACCCAGCAGATGTCGGCTCTGCCTGGGCACGGCACTGGCCAACCAACCGGCGGTGTGACCGAGGGCGTCGTTGGGGCACACCCGATTGGAACCCAGACTGGCACTGGACGGACAGCGACAGCCCACAACCCTCGTGTTGGTGGTGCGACTGGGTACGGCACCGGCACCGGCACCGACGGTGGCTATAGTTAG

mRNA sequence

ATGCAATCAGGAAAGAAGGCAATGGAATCCATGAAGGAATCGGCTGCGAATGTTGCAGCCTCCGCCAAGGCCGGCATGGACAAGACTAAAGCCACTGTGCAAGAGAAGATGGAGAAAGTTACGGCCCATGATCCGTTGGCAAAAGAAATTGCAGAGGAGAAGAAACAAGCAAAGATCCACGAGGCAGAGCTCCAGAAACAGGAGGCGCGTCAGCACAACGCCGCTGTCAGACAGTCTGCTACGGCGGCAGCCACACACGGGACACACCCAACAACCCACCCCACCGCCACATACTCCACCACTGGAGCCCATGGCTACACCACTGGGACCCAGCAGATGTCGGCTCTGCCTGGGCACGGCACTGGCCAACCAACCGGCGGTGTGACCGAGGGCGTCGTTGGGGCACACCCGATTGGAACCCAGACTGGCACTGGACGGACAGCGACAGCCCACAACCCTCGTGTTGGTGGTGCGACTGGGTACGGCACCGGCACCGGCACCGACGGTGGCTATAGTTAG

Coding sequence (CDS)

ATGCAATCAGGAAAGAAGGCAATGGAATCCATGAAGGAATCGGCTGCGAATGTTGCAGCCTCCGCCAAGGCCGGCATGGACAAGACTAAAGCCACTGTGCAAGAGAAGATGGAGAAAGTTACGGCCCATGATCCGTTGGCAAAAGAAATTGCAGAGGAGAAGAAACAAGCAAAGATCCACGAGGCAGAGCTCCAGAAACAGGAGGCGCGTCAGCACAACGCCGCTGTCAGACAGTCTGCTACGGCGGCAGCCACACACGGGACACACCCAACAACCCACCCCACCGCCACATACTCCACCACTGGAGCCCATGGCTACACCACTGGGACCCAGCAGATGTCGGCTCTGCCTGGGCACGGCACTGGCCAACCAACCGGCGGTGTGACCGAGGGCGTCGTTGGGGCACACCCGATTGGAACCCAGACTGGCACTGGACGGACAGCGACAGCCCACAACCCTCGTGTTGGTGGTGCGACTGGGTACGGCACCGGCACCGGCACCGACGGTGGCTATAGTTAG

Protein sequence

MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELQKQEARQHNAAVRQSATAAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPGHGTGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGGATGYGTGTGTDGGYS

Homology

[Close]

BLAST of Cla011668 vs. Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.8e-54
Identity = 111/171 (64.91%), Postives = 126/171 (73.68%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+A N+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK+AK++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAELQKQEARQHNAAVRQSATAAA--THGTHP--TTHPTATYSTTGAHGYTTGTQQMSAL 120
           +AEL KQ ARQHN A +QSAT A    HG H   T   TATYSTTG +G   G  Q SA+
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAM 120

Query: 121 PGHGTGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGG-ATGYGTGTG 167
           PGHGTGQPTG VTEGVVG+HPIGT  G G TATAHN R GG    YG GTG
Sbjct: 121 PGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPNDYGYGTG 171

[Close]

BLAST of Cla011668 vs. Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-26
Identity = 64/110 (58.18%), Postives = 78/110 (70.91%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSGK A  S KE+AANVAASAKAGM+KTKA++QEK EK+TAHDP+ KE+A EKK+ + H
Sbjct: 1   MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60

Query: 61  EAELQKQEARQHNAAVRQSATAAATHGTHPTTHPTATYSTTGAHGYTTGT 111
           EAE +KQ A++HNAA +Q  T     GTH       +Y+TT   G+ TGT
Sbjct: 61  EAEYEKQAAKEHNAAQKQ--TTGIGTGTH-------SYTTTNVTGHRTGT 101

[Close]

BLAST of Cla011668 vs. Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-15
Identity = 60/164 (36.59%), Postives = 81/164 (49.39%), Query Frame = 1


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELQKQ 67
           M+SMK++    AASAKAGM+K KA++QEK++++   DP  KE+A E+K+ +  +AEL+KQ
Sbjct: 1   MQSMKDA----AASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQ 60

Query: 68  EARQHNAAVRQSATAAATHGTHPTTHPTATYSTTGAHGY-TTGTQQMSALPGHGTGQPTG 127
           EAR HNA    +A      G   T + TA Y+     GY  TG       P  G+G  TG
Sbjct: 61  EARHHNA----TAGHVGGGGIGGTGYTTAGYNIGDTGGYGGTGGHDNRGYPTAGSGYDTG 120

Query: 128 GVTEGVVGAHPIGTQTGTGRTATAHNPRVGGATGYGTGTGTDGG 171
              +         T+   G T     P    +   GT   T GG
Sbjct: 121 RQDDLSSMGFGGDTEGAYGTTGNQDFPN-AASNNAGTRRNTRGG 155

[Close]

BLAST of Cla011668 vs. Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.9e-13
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1


Query: 13  ESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELQKQEARQH 72
           ++  + A++AKAGM+KTKA VQEK E++T  DPL KE+A EKK+ ++  AE+ K++A+  
Sbjct: 2   QTGKDAASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQ 61

Query: 73  NAAVRQSATAAATHGTHPTTHPTATYSTTGAH 105
           +AA +Q    AAT GT      T  Y  TG H
Sbjct: 62  HAAEKQ---GAATTGT-----GTTGYGATGNH 85

[Close]

BLAST of Cla011668 vs. TrEMBL
Match: A0A0A0KZ59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499300 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 8.5e-81
Identity = 155/174 (89.08%), Postives = 160/174 (91.95%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSGKKA+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELQKQEARQHNAAVRQSAT--AAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPG 120
           EAEL KQEARQHNAAVRQ+AT  AAATHGTHPTTH TATYSTTGAHGYTTGTQQ SALPG
Sbjct: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120

Query: 121 HGTGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGGATGYGTGTGTDGGYS 173
           HGTGQPTG VTEGVVGAHPIGT+TGTGRT TAHNP  GG TGYGTGT T G Y+
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

[Close]

BLAST of Cla011668 vs. TrEMBL
Match: Q9FNW3_GLYTO (Seed maturation protein LEA 4 OS=Glycine tomentella PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-52
Identity = 111/167 (66.47%), Postives = 126/167 (75.45%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELQKQEARQHNAAVRQSATAAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPGHG 120
           +AEL KQ ARQHN A +Q+ATA      H T   TATYSTTG HG   G  Q SALPGHG
Sbjct: 61  QAELDKQAARQHNTAAKQAATAGHMGQGHHTP-GTATYSTTGEHGQPMGAHQTSALPGHG 120

Query: 121 TGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGG-ATGYGTGTG 167
           TGQPTG VTEGVVG+HPIGT  G G TATAHN R GG    YG GTG
Sbjct: 121 TGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTG 166

[Close]

BLAST of Cla011668 vs. TrEMBL
Match: Q9FT31_GLYTA (Seed maturation protein OS=Glycine tabacina PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-52
Identity = 110/167 (65.87%), Postives = 126/167 (75.45%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELQKQEARQHNAAVRQSATAAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPGHG 120
           +AEL KQ ARQHN A +Q+ATA      H T   TATYSTTG HG   G  Q SA+PGHG
Sbjct: 61  QAELDKQAARQHNTAAKQAATAGHMGQGHHTPE-TATYSTTGEHGQPMGAHQTSAMPGHG 120

Query: 121 TGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGG-ATGYGTGTG 167
           TGQPTG VTEGVVG+HPIGT  G G TATAHN R GG    YG GTG
Sbjct: 121 TGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTG 166

[Close]

BLAST of Cla011668 vs. TrEMBL
Match: Q9FNW9_GLYTA (Seed maturation protein LEA 4 OS=Glycine tabacina PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.7e-52
Identity = 110/167 (65.87%), Postives = 126/167 (75.45%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELQKQEARQHNAAVRQSATAAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPGHG 120
           +AEL KQ ARQHN A +Q+ATA      H  T  TATYSTTG HG   G  Q SA+PGHG
Sbjct: 61  QAELDKQAARQHNTAAKQAATAGHMGQGH-NTPGTATYSTTGEHGQPMGAHQTSAMPGHG 120

Query: 121 TGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGG-ATGYGTGTG 167
           TGQPTG VTEGVVG+HPIGT  G G TATAHN R GG    YG GTG
Sbjct: 121 TGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTG 166

[Close]

BLAST of Cla011668 vs. TrEMBL
Match: Q9FT28_GLYTO (Seed maturation protein OS=Glycine tomentella PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.4e-52
Identity = 110/167 (65.87%), Postives = 126/167 (75.45%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TA DP+ +E+A +KK+AKI 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPVQRELATQKKEAKIS 60

Query: 61  EAELQKQEARQHNAAVRQSATAAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPGHG 120
           +AEL KQ ARQHN A +Q+ATA      H T   TATYSTTG HG   G  Q SA+PGHG
Sbjct: 61  QAELDKQAARQHNTAAKQAATAGHMGQGHHTP-GTATYSTTGEHGQPMGAHQTSAMPGHG 120

Query: 121 TGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGG-ATGYGTGTG 167
           TGQPTG VTEGVVG+HPIGT  G G TATAHN R GG    YG GTG
Sbjct: 121 TGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTG 166

[Close]

BLAST of Cla011668 vs. NCBI nr
Match: gi|449457345|ref|XP_004146409.1| (PREDICTED: 18 kDa seed maturation protein [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-80
Identity = 155/174 (89.08%), Postives = 160/174 (91.95%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSGKKA+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELQKQEARQHNAAVRQSAT--AAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPG 120
           EAEL KQEARQHNAAVRQ+AT  AAATHGTHPTTH TATYSTTGAHGYTTGTQQ SALPG
Sbjct: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120

Query: 121 HGTGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGGATGYGTGTGTDGGYS 173
           HGTGQPTG VTEGVVGAHPIGT+TGTGRT TAHNP  GG TGYGTGT T G Y+
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

[Close]

BLAST of Cla011668 vs. NCBI nr
Match: gi|659082984|ref|XP_008442129.1| (PREDICTED: 18 kDa seed maturation protein [Cucumis melo])

HSP 1 Score: 300.1 bits (767), Expect = 2.6e-78
Identity = 153/177 (86.44%), Postives = 158/177 (89.27%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSGKKAMES+KESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAMESVKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELQKQEARQHNAAVRQSAT--AAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPG 120
           EAEL KQEARQHNAAVRQ+AT  AA THGTHPTTH TAT+STTGAHGYTTGT QMSALPG
Sbjct: 61  EAELNKQEARQHNAAVRQAATVGAATTHGTHPTTHSTATHSTTGAHGYTTGTHQMSALPG 120

Query: 121 HGTGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGGATGYGTGT---GTDGGYS 173
           HGTGQPTG VTEGVVG HPIGT TGTGRT TAHNP  GG TGYGTGT   GT G Y+
Sbjct: 121 HGTGQPTGPVTEGVVGVHPIGTATGTGRTTTAHNPLAGGETGYGTGTRTGGTGGSYT 177

[Close]

BLAST of Cla011668 vs. NCBI nr
Match: gi|10334840|gb|AAG15415.1| (seed maturation protein [Glycine tabacina])

HSP 1 Score: 213.0 bits (541), Expect = 4.1e-52
Identity = 110/167 (65.87%), Postives = 126/167 (75.45%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELQKQEARQHNAAVRQSATAAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPGHG 120
           +AEL KQ ARQHN A +Q+ATA      H T   TATYSTTG HG   G  Q SA+PGHG
Sbjct: 61  QAELDKQAARQHNTAAKQAATAGHMGQGHHTPE-TATYSTTGEHGQPMGAHQTSAMPGHG 120

Query: 121 TGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGG-ATGYGTGTG 167
           TGQPTG VTEGVVG+HPIGT  G G TATAHN R GG    YG GTG
Sbjct: 121 TGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTG 166

[Close]

BLAST of Cla011668 vs. NCBI nr
Match: gi|11612197|gb|AAG37451.1| (seed maturation protein LEA 4 [Glycine tomentella])

HSP 1 Score: 213.0 bits (541), Expect = 4.1e-52
Identity = 111/167 (66.47%), Postives = 126/167 (75.45%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELQKQEARQHNAAVRQSATAAATHGTHPTTHPTATYSTTGAHGYTTGTQQMSALPGHG 120
           +AEL KQ ARQHN A +Q+ATA      H T   TATYSTTG HG   G  Q SALPGHG
Sbjct: 61  QAELDKQAARQHNTAAKQAATAGHMGQGHHTP-GTATYSTTGEHGQPMGAHQTSALPGHG 120

Query: 121 TGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGG-ATGYGTGTG 167
           TGQPTG VTEGVVG+HPIGT  G G TATAHN R GG    YG GTG
Sbjct: 121 TGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTG 166

[Close]

BLAST of Cla011668 vs. NCBI nr
Match: gi|1009161531|ref|XP_015898949.1| (PREDICTED: 18 kDa seed maturation protein [Ziziphus jujuba])

HSP 1 Score: 212.6 bits (540), Expect = 5.4e-52
Identity = 118/196 (60.20%), Postives = 136/196 (69.39%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSG+ AMES+KE AANVAASAK+GM+KTKA +QEK E++TAHDP+ KE+A EKK  KI 
Sbjct: 1   MQSGRNAMESVKEGAANVAASAKSGMEKTKAALQEKKERMTAHDPVEKEMATEKKNEKIT 60

Query: 61  EAELQKQEARQHNAAVRQSATAAA-----------------------THGTHPTTHPTAT 120
           EAEL KQEAR+ NAA RQ+A+A                           G +  T  TAT
Sbjct: 61  EAELNKQEARRQNAAARQAASAGGHTGSTGYTATGTTGYTNSSTGTGNTGNNTITTRTAT 120

Query: 121 YSTTGAHGYTTGTQQMSALPGHGTGQPTGGVTEGVVGAHPIGTQTGTGRTATAHNPRVGG 173
           YSTTGA G+ TGT QMSALPGHGTGQP G VT+GV+GAHP+GT TGTGRT TAHNP  GG
Sbjct: 121 YSTTGATGHPTGTHQMSALPGHGTGQPAGQVTDGVMGAHPVGTNTGTGRT-TAHNPYTGG 180

The following BLAST results are available for this feature:

BLAST of Cla011668 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PM1_SOYBN	9.8e-54	64.91	18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1	[more]
LEA11_HELAN	5.1e-26	58.18	11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1	[more]
LEA13_GOSHI	3.1e-15	36.59	Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2	[more]
LE25_SOLLC	4.9e-13	45.65	Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1	[more]

BLAST of Cla011668 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ59_CUCSA	8.5e-81	89.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499300 PE=4 SV=1	[more]
Q9FNW3_GLYTO	2.9e-52	66.47	Seed maturation protein LEA 4 OS=Glycine tomentella PE=4 SV=1	[more]
Q9FT31_GLYTA	2.9e-52	65.87	Seed maturation protein OS=Glycine tabacina PE=2 SV=1	[more]
Q9FNW9_GLYTA	3.7e-52	65.87	Seed maturation protein LEA 4 OS=Glycine tabacina PE=4 SV=1	[more]
Q9FT28_GLYTO	6.4e-52	65.87	Seed maturation protein OS=Glycine tomentella PE=2 SV=1	[more]

BLAST of Cla011668 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457345\|ref\|XP_004146409.1\|	1.2e-80	89.08	PREDICTED: 18 kDa seed maturation protein [Cucumis sativus]	[more]
gi\|659082984\|ref\|XP_008442129.1\|	2.6e-78	86.44	PREDICTED: 18 kDa seed maturation protein [Cucumis melo]	[more]
gi\|10334840\|gb\|AAG15415.1\|	4.1e-52	65.87	seed maturation protein [Glycine tabacina]	[more]
gi\|11612197\|gb\|AAG37451.1\|	4.1e-52	66.47	seed maturation protein LEA 4 [Glycine tomentella]	[more]
gi\|1009161531\|ref\|XP_015898949.1\|	5.4e-52	60.20	PREDICTED: 18 kDa seed maturation protein [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

Vocabulary: **Biological Process**
Term	Definition
GO:0009790	embryo development

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009790	embryo development
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009409	response to cold
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0048030	disaccharide binding
molecular_function	GO:0031210	phosphatidylcholine binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU17107	watermelon EST collection version 2.0	transcribed_cluster
WMU72609	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011668	Cla011668.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU17107	WMU17107	transcribed_cluster
WMU72609	WMU72609	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PRODOM	PD005538		coord: 8..73 score: 3.
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PFAM	PF03760	LEA_1	coord: 8..77 score: 8.7
None	No IPR available	unknown	Coil	Coil	coord: 47..79 scor
None	No IPR available	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 2..171 score: 2.4
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5	coord: 2..171 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla011668	Cla97C04G069720	Watermelon (97103) v2	wmwmbB292
Cla011668	ClCG04G002110	Watermelon (Charleston Gray)	wcgwmB256
Cla011668	CSPI04G20470	Wild cucumber (PI 183967)	cpiwmB348
Cla011668	CmaCh07G012440	Cucurbita maxima (Rimu)	cmawmB839
Cla011668	Cp4.1LG19g01360	Cucurbita pepo (Zucchini)	cpewmB489
Cla011668	CsGy4G019010	Cucumber (Gy14) v2	cgybwmB316
Cla011668	MELO3C008930.2	Melon (DHL92) v3.6.1	medwmB565
Cla011668	Carg12677	Silver-seed gourd	carwmB0277
Cla011668	CsaV3_4G030630	Cucumber (Chinese Long) v3	cucwmB357

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011668	Cucurbita pepo (Zucchini)	cpewmB089
Cla011668	Bottle gourd (USVL1VR-Ls)	lsiwmB146
Cla011668	Wax gourd	wgowmB455
Cla011668	Cucumber (Gy14) v1	cgywmB637
Cla011668	Cucurbita maxima (Rimu)	cmawmB643
Cla011668	Melon (DHL92) v3.5.1	mewmB576
Cla011668	Cucumber (Chinese Long) v2	cuwmB333