Carg12677-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAGAAGAACTTCAAAAATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTTCAAGAGAAGGTATAGTTTGAGCTTATCCCTTTCAAATGTGTTTATAAGTCATACGAGACATTTTGAAGAAATCTAAAGTAAATCTACGAGAGATTATACTCAAAGTGGACAATATCTTCGATTGTGGGGACTCGTTATTCATGTTTGTTCATGTTTATCGGAGCCATAACCTTAATCTAGCCAAGGACTCCAAAAAAACGAGTCGAGCCTCGATTAAGGGAGGCTTTTCGAGGGCTACGTAGACCTCAAGGGAGGCTCTATCGTGTACTTCCTTCCACTCTTGAAGATCATAAATTTATAAGTGAGAAATGCTATCTTTATTGGACGGAAATTTCAAATGAAAGCTATGAGAACTTATGCTCAAAGTAAACAATATCATACCGTAGTACGAGATAAAACTGATTGAATAATGCTCTCTTTTTTACTGATTATATAGATGGAGAAGGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGAACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAAGATGGGAAGTTTGTTGGGTTTGGTACAATAATAAGTGGGCTTCGTGTTGTTTTAAGGTTGAAGTCCAACGAGTTTGTGTTTGGTTTTAGGGTTTTTATGTTATGTATTGTTGTTTATGGTTTGGATTGTTTTGTTTTGTTTTGTTTTGTT CAAAGAAGAACTTCAAAAATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTTCAAGAGAAGATGGAGAAGGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGAACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAAGATGGGAAGTTTGTTGGGTTTGGTACAATAATAAGTGGGCTTCGTGTTGTTTTAAGGTTGAAGTCCAACGAGTTTGTGTTTGGTTTTAGGGTTTTTATGTTATGTATTGTTGTTTATGGTTTGGATTGTTTTGTTTTGTTTTGTTTTGTT ATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTTCAAGAGAAGATGGAGAAGGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGAACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAA MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS
BLAST of Carg12677-RA vs. NCBI nr
Match: XP_022924969.1 (late embryogenesis abundant protein 46 [Cucurbita moschata] >XP_023518250.1 late embryogenesis abundant protein 46 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64 Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0
BLAST of Carg12677-RA vs. NCBI nr
Match: XP_022966467.1 (late embryogenesis abundant protein 46 [Cucurbita maxima]) HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55 Identity = 160/172 (93.02%), Postives = 161/172 (93.60%), Query Frame = 0
BLAST of Carg12677-RA vs. NCBI nr
Match: XP_004146409.1 (PREDICTED: 18 kDa seed maturation protein [Cucumis sativus] >KGN54793.1 hypothetical protein Csa_4G499300 [Cucumis sativus]) HSP 1 Score: 153.3 bits (386), Expect = 7.5e-34 Identity = 130/174 (74.71%), Postives = 135/174 (77.59%), Query Frame = 0
BLAST of Carg12677-RA vs. NCBI nr
Match: XP_009369595.1 (PREDICTED: 18 kDa seed maturation protein [Pyrus x bretschneideri]) HSP 1 Score: 151.4 bits (381), Expect = 2.9e-33 Identity = 98/173 (56.65%), Postives = 112/173 (64.74%), Query Frame = 0
BLAST of Carg12677-RA vs. NCBI nr
Match: XP_008442129.1 (PREDICTED: 18 kDa seed maturation protein [Cucumis melo]) HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30 Identity = 126/171 (73.68%), Postives = 129/171 (75.44%), Query Frame = 0
BLAST of Carg12677-RA vs. TAIR10
Match: AT5G06760.1 (Late Embryogenesis Abundant 4-5) HSP 1 Score: 87.8 bits (216), Expect = 7.0e-18 Identity = 75/165 (45.45%), Postives = 94/165 (56.97%), Query Frame = 0
BLAST of Carg12677-RA vs. Swiss-Prot
Match: sp|Q01417|PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29 Identity = 93/173 (53.76%), Postives = 108/173 (62.43%), Query Frame = 0
BLAST of Carg12677-RA vs. Swiss-Prot
Match: sp|Q9FG31|LEA46_ARATH (Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.3e-16 Identity = 75/165 (45.45%), Postives = 94/165 (56.97%), Query Frame = 0
BLAST of Carg12677-RA vs. Swiss-Prot
Match: sp|Q00747|LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06 Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 0
BLAST of Carg12677-RA vs. TrEMBL
Match: tr|A0A0A0KZ59|A0A0A0KZ59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499300 PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 5.0e-34 Identity = 130/174 (74.71%), Postives = 135/174 (77.59%), Query Frame = 0
BLAST of Carg12677-RA vs. TrEMBL
Match: tr|A0A1S3B5R4|A0A1S3B5R4_CUCME (18 kDa seed maturation protein OS=Cucumis melo OX=3656 GN=LOC103486081 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 6.7e-31 Identity = 126/171 (73.68%), Postives = 129/171 (75.44%), Query Frame = 0
BLAST of Carg12677-RA vs. TrEMBL
Match: tr|Q9FT33|Q9FT33_GLYTO (Seed maturation protein OS=Glycine tomentella OX=44015 PE=2 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 5.7e-30 Identity = 106/172 (61.63%), Postives = 120/172 (69.77%), Query Frame = 0
BLAST of Carg12677-RA vs. TrEMBL
Match: tr|Q9FNW9|Q9FNW9_GLYTA (Seed maturation protein LEA 4 OS=Glycine tabacina OX=44016 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 9.7e-30 Identity = 91/169 (53.85%), Postives = 105/169 (62.13%), Query Frame = 0
BLAST of Carg12677-RA vs. TrEMBL
Match: tr|V7CVX7|V7CVX7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G143100g PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 9.7e-30 Identity = 88/172 (51.16%), Postives = 109/172 (63.37%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|