CmoCh07G012900 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G012900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Seed maturation protein LEA 4
Location	Cmo_Chr07 : 7126318 .. 7127610 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAAGAAGAACTTCAAAAATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTGCAAGAGAAGGTATAGTTTGAGCTTATCCCTTTCAAATGTGTTTATAAGTCACGAATATTATCTCTATTGATACGAGACATTTTGAAGAAATTTAAAGTAAATCTACGAGAGATTATACTCAAAGTGGATAATATCTTCGATTGTGGGGAGTCGTTATTCATATTTGTTCATGTTTATTCGAGCCATGTCAATAGAATCTTCAAGGGTCGAAAATAAAGAAATTGCTAGCCTCAAAGGTATCTAAAAGTGACTCGTGTCGAATAAATGGTGTATTTTGTTCGAGGACTCCAACAAAACGAGTCGAGCCTCGATTAAAAGAGGCTATTCGAGGGCTACGTAGACCTCAAGGGAGGCTCTATCGTGTACTTCCTTCCACTCATATCGGTGGAAGATCATAAATTTATTAGTGAGAAATGCTATCTTTATTGGTACGAGGTCTCGTGGGAAATTTCAAATGATCGAATGAAAGCTACGATAACTTATGCTCAAAGTAAACAATATTCTACTATAGTGGAGTGTTGTTATTCCTAACCAATTTTTTTTTTTTTAATAGATAAAACTGATTGAATAATGCTTTTTTTTACTGATTATATAGATGGAGAAAGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGGACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAAGATGGGAAGTTTGTTGGGTTTGGTACAATAATAAGTGGGCTTCGTGTTGTTTTAAGGTTGAAGTCCAACGAGTTTGTGTTTGGTTTTAGGGTTGTTATGTTATGTATGGTTGTTTATGGTTTGGATTGTTTTGTTTGTAATTTGTATGGTTTTATGGTGTCCACTCTTTAA

mRNA sequence

TTCAAAGAAGAACTTCAAAAATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTGCAAGAGAAGATGGAGAAAGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGGACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTTGAAGTCCAACGAGTTTGTGTTTGGTTTTAGGGTTGTTATGTTATGTATGGTTGTTTATGGTTTGGATTGTTTTGTTTGTAATTTGTATGGTTTTATGGTGTCCACTCTTTAA

Coding sequence (CDS)

ATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTGCAAGAGAAGATGGAGAAAGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGGACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTTGAAGTCCAACGAGTTTGTGTTTGGTTTTAGGGTTGTTATGTTATGTATGGTTGTTTATGGTTTGGATTGTTTTGTTTGTAATTTGTATGGTTTTATGGTGTCCACTCTTTAA

Homology

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BLAST of CmoCh07G012900 vs. Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-41
Identity = 105/172 (61.05%), Postives = 123/172 (71.51%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+A N+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KK+AK++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAELHKQEAREHNAAMKQATTATA--THGMHP--TTHGTATYSTTGAQGYTTGTQQMSAV 120
           +AEL KQ AR+HN A KQ+ T      HG H   T  GTATYSTTG  G   G  Q SA+
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAM 120

Query: 121 PGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTGG 169
           PGHGTGQPTG VTEGVVG+HPIG   G G T TAHN   GG  +   Y TGG
Sbjct: 121 PGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPNDYGYGTGG 172

[Close]

BLAST of CmoCh07G012900 vs. Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-20
Identity = 67/110 (60.91%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKNA  S KE+AANVAASAKAGM+KTKA++QEK EK+TA DP+ KE+A EKK+ + H
Sbjct: 1   MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGT 111
           EAE  KQ A+EHNAA KQ TT   T        GT +Y+TT   G+ TGT
Sbjct: 61  EAEYEKQAAKEHNAAQKQ-TTGIGT--------GTHSYTTTNVTGHRTGT 101

[Close]

BLAST of CmoCh07G012900 vs. Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09
Identity = 65/175 (37.14%), Postives = 93/175 (53.14%), Query Frame = 1


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAELHKQ 67
           M+SMK++    AASAKAGM+K KA++QEK++++  RDP  KE+A E+K+ +  +AEL KQ
Sbjct: 1   MQSMKDA----AASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQ 60

Query: 68  EAREHNAAMKQATTATATH----GMHPTTHGTATYSTTGAQGY-TTGTQQMSAVPGHGTG 127
           EAR HN        ATA H    G+  T + TA Y+     GY  TG       P  G+G
Sbjct: 61  EARHHN--------ATAGHVGGGGIGGTGYTTAGYNIGDTGGYGGTGGHDNRGYPTAGSG 120

Query: 128 QPTGQVTEGVVGTHPIGHQTGTGRTTTAHN--PNVGGGGDATRYSTGGGLKSNEF 176
             TG+  +  + +   G  T     TT +   PN       TR +T GG + + +
Sbjct: 121 YDTGRQDD--LSSMGFGGDTEGAYGTTGNQDFPNAASNNAGTRRNTRGGTQDDPY 161

[Close]

BLAST of CmoCh07G012900 vs. Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.7e-09
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ+GK+A           A++AKAGM+KTKA VQEK E++T RDPL KE+A EKK+ ++ 
Sbjct: 1   MQTGKDA-----------ASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVA 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTG 103
            AE+ K++A+  +AA KQ    T T        GT  Y  TG
Sbjct: 61  AAEMGKRDAKAQHAAEKQGAATTGT--------GTTGYGATG 83

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BLAST of CmoCh07G012900 vs. TrEMBL
Match: A0A0A0KZ59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499300 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.1e-62
Identity = 143/171 (83.63%), Postives = 151/171 (88.30%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK A+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATT--ATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPG 120
           EAEL+KQEAR+HNAA++QA T  A ATHG HPTTH TATYSTTGA GYTTGTQQ SA+PG
Sbjct: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGG-GDATRYSTGG 169
           HGTGQPTG VTEGVVG HPIG +TGTGRTTTAHNP  GGG G  T   TGG
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGG 171

[Close]

BLAST of CmoCh07G012900 vs. TrEMBL
Match: G7KVD4_MEDTR (Seed maturation protein OS=Medicago truncatula GN=MTR_7g093170 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.5e-43
Identity = 110/177 (62.15%), Postives = 131/177 (74.01%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ  K A E++KE+AAN+ ASAK+GM+KTKAT+QEK EK+TARDP+ KE+A  KK+AK++
Sbjct: 1   MQGAKKAGETIKETAANIGASAKSGMEKTKATLQEKTEKMTARDPVQKEMATHKKEAKMN 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHP------TTHGTATYSTTGAQGYTTGTQQMS 120
           +AEL K  AREHNAA+KQ TTA A H   P      T  GTATYSTTG  G+ TG  QMS
Sbjct: 61  QAELDKLAAREHNAAVKQTTTAAAGHMGQPHHTTGTTGTGTATYSTTGNYGHPTGAHQMS 120

Query: 121 AVPGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTGGGLK 172
           A+PGHGTGQPTG V +GVVG+HPIG   GT  T TAHN  VGG  +AT Y+TGG  K
Sbjct: 121 AMPGHGTGQPTGHVVDGVVGSHPIGTNRGTDGTATAHNTRVGGNPNATGYTTGGTYK 177

[Close]

BLAST of CmoCh07G012900 vs. TrEMBL
Match: Q9FNW9_GLYTA (Seed maturation protein LEA 4 OS=Glycine tabacina PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.1e-41
Identity = 108/169 (63.91%), Postives = 124/169 (73.37%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELHKQEAREHNAAMKQATTATATH-GMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGH 120
           +AEL KQ AR+HN A KQA  ATA H G    T GTATYSTTG  G   G  Q SA+PGH
Sbjct: 61  QAELDKQAARQHNTAAKQA--ATAGHMGQGHNTPGTATYSTTGEHGQPMGAHQTSAMPGH 120

Query: 121 GTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTGG 169
           GTGQPTG VTEGVVG+HPIG   G G T TAHN   GG  +   Y TGG
Sbjct: 121 GTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGG 167

[Close]

BLAST of CmoCh07G012900 vs. TrEMBL
Match: Q9FNW3_GLYTO (Seed maturation protein LEA 4 OS=Glycine tomentella PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.0e-40
Identity = 108/169 (63.91%), Postives = 124/169 (73.37%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELHKQEAREHNAAMKQATTATATH-GMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGH 120
           +AEL KQ AR+HN A KQA  ATA H G    T GTATYSTTG  G   G  Q SA+PGH
Sbjct: 61  QAELDKQAARQHNTAAKQA--ATAGHMGQGHHTPGTATYSTTGEHGQPMGAHQTSALPGH 120

Query: 121 GTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTGG 169
           GTGQPTG VTEGVVG+HPIG   G G T TAHN   GG  +   Y TGG
Sbjct: 121 GTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGG 167

[Close]

BLAST of CmoCh07G012900 vs. TrEMBL
Match: Q9FT28_GLYTO (Seed maturation protein OS=Glycine tomentella PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-40
Identity = 108/169 (63.91%), Postives = 124/169 (73.37%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ +E+A +KK+AKI 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPVQRELATQKKEAKIS 60

Query: 61  EAELHKQEAREHNAAMKQATTATATH-GMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGH 120
           +AEL KQ AR+HN A KQA  ATA H G    T GTATYSTTG  G   G  Q SA+PGH
Sbjct: 61  QAELDKQAARQHNTAAKQA--ATAGHMGQGHHTPGTATYSTTGEHGQPMGAHQTSAMPGH 120

Query: 121 GTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTGG 169
           GTGQPTG VTEGVVG+HPIG   G G T TAHN   GG  +   Y TGG
Sbjct: 121 GTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGG 167

[Close]

BLAST of CmoCh07G012900 vs. TAIR10
Match: AT5G06760.1 (AT5G06760.1 Late Embryogenesis Abundant 4-5)

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 99/162 (61.11%), Postives = 124/162 (76.54%), Query Frame = 1


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAELHKQ 67
           M+SMKE+A+N+AASAK+GMDKTKAT++EK EK+  RDP+ K++A + K+ KI++AE+ K+
Sbjct: 1   MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKR 60

Query: 68  EAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHGTGQPTGQ 127
           E R+HNAAMK+A  A    G+     GTAT+STTG  G+ TGT QMSA+PGHGTGQ T +
Sbjct: 61  ETRQHNAAMKEAAGAGTGLGL-----GTATHSTTGQVGHGTGTHQMSALPGHGTGQLTDR 120

Query: 128 VTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTGGG 170
           V EG   T PIG  TGTGR TTAHN +VGGGG AT Y TGGG
Sbjct: 121 VVEGTAVTDPIGRNTGTGR-TTAHNTHVGGGG-ATGYGTGGG 155

[Close]

BLAST of CmoCh07G012900 vs. NCBI nr
Match: gi|449457345|ref|XP_004146409.1| (PREDICTED: 18 kDa seed maturation protein [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-62
Identity = 143/171 (83.63%), Postives = 151/171 (88.30%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK A+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATT--ATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPG 120
           EAEL+KQEAR+HNAA++QA T  A ATHG HPTTH TATYSTTGA GYTTGTQQ SA+PG
Sbjct: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGG-GDATRYSTGG 169
           HGTGQPTG VTEGVVG HPIG +TGTGRTTTAHNP  GGG G  T   TGG
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGG 171

[Close]

BLAST of CmoCh07G012900 vs. NCBI nr
Match: gi|659082984|ref|XP_008442129.1| (PREDICTED: 18 kDa seed maturation protein [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 1.3e-60
Identity = 139/169 (82.25%), Postives = 147/169 (86.98%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK AMES+KESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAMESVKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATT--ATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPG 120
           EAEL+KQEAR+HNAA++QA T  A  THG HPTTH TAT+STTGA GYTTGT QMSA+PG
Sbjct: 61  EAELNKQEARQHNAAVRQAATVGAATTHGTHPTTHSTATHSTTGAHGYTTGTHQMSALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTG 168
           HGTGQPTG VTEGVVG HPIG  TGTGRTTTAHNP  GG    T Y TG
Sbjct: 121 HGTGQPTGPVTEGVVGVHPIGTATGTGRTTTAHNPLAGG---ETGYGTG 166

[Close]

BLAST of CmoCh07G012900 vs. NCBI nr
Match: gi|357509939|ref|XP_003625258.1| (seed maturation protein [Medicago truncatula])

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 110/177 (62.15%), Postives = 131/177 (74.01%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ  K A E++KE+AAN+ ASAK+GM+KTKAT+QEK EK+TARDP+ KE+A  KK+AK++
Sbjct: 1   MQGAKKAGETIKETAANIGASAKSGMEKTKATLQEKTEKMTARDPVQKEMATHKKEAKMN 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHP------TTHGTATYSTTGAQGYTTGTQQMS 120
           +AEL K  AREHNAA+KQ TTA A H   P      T  GTATYSTTG  G+ TG  QMS
Sbjct: 61  QAELDKLAAREHNAAVKQTTTAAAGHMGQPHHTTGTTGTGTATYSTTGNYGHPTGAHQMS 120

Query: 121 AVPGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTGGGLK 172
           A+PGHGTGQPTG V +GVVG+HPIG   GT  T TAHN  VGG  +AT Y+TGG  K
Sbjct: 121 AMPGHGTGQPTGHVVDGVVGSHPIGTNRGTDGTATAHNTRVGGNPNATGYTTGGTYK 177

[Close]

BLAST of CmoCh07G012900 vs. NCBI nr
Match: gi|11612177|gb|AAG37441.1| (seed maturation protein LEA 4 [Glycine tabacina])

HSP 1 Score: 175.6 bits (444), Expect = 8.7e-41
Identity = 108/169 (63.91%), Postives = 124/169 (73.37%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELHKQEAREHNAAMKQATTATATH-GMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGH 120
           +AEL KQ AR+HN A KQA  ATA H G    T GTATYSTTG  G   G  Q SA+PGH
Sbjct: 61  QAELDKQAARQHNTAAKQA--ATAGHMGQGHNTPGTATYSTTGEHGQPMGAHQTSAMPGH 120

Query: 121 GTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGDATRYSTGG 169
           GTGQPTG VTEGVVG+HPIG   G G T TAHN   GG  +   Y TGG
Sbjct: 121 GTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGG 167

[Close]

BLAST of CmoCh07G012900 vs. NCBI nr
Match: gi|1009161531|ref|XP_015898949.1| (PREDICTED: 18 kDa seed maturation protein [Ziziphus jujuba])

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 113/191 (59.16%), Postives = 132/191 (69.11%), Query Frame = 1


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSG+NAMES+KE AANVAASAK+GM+KTKA +QEK E++TA DP+ KE+A EKK  KI 
Sbjct: 1   MQSGRNAMESVKEGAANVAASAKSGMEKTKAALQEKKERMTAHDPVEKEMATEKKNEKIT 60

Query: 61  EAELHKQEAREHNAAMKQAT-----------TATATHGMHPTTHGT------------AT 120
           EAEL+KQEAR  NAA +QA            TAT T G   ++ GT            AT
Sbjct: 61  EAELNKQEARRQNAAARQAASAGGHTGSTGYTATGTTGYTNSSTGTGNTGNNTITTRTAT 120

Query: 121 YSTTGAQGYTTGTQQMSAVPGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGG 169
           YSTTGA G+ TGT QMSA+PGHGTGQP GQVT+GV+G HP+G  TGTGR TTAHNP  GG
Sbjct: 121 YSTTGATGHPTGTHQMSALPGHGTGQPAGQVTDGVMGAHPVGTNTGTGR-TTAHNPYTGG 180

The following BLAST results are available for this feature:

BLAST of CmoCh07G012900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PM1_SOYBN	1.3e-41	61.05	18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1	[more]
LEA11_HELAN	1.3e-20	60.91	11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1	[more]
LEA13_GOSHI	1.8e-09	37.14	Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2	[more]
LE25_SOLLC	6.7e-09	45.10	Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1	[more]

BLAST of CmoCh07G012900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ59_CUCSA	2.1e-62	83.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499300 PE=4 SV=1	[more]
G7KVD4_MEDTR	6.5e-43	62.15	Seed maturation protein OS=Medicago truncatula GN=MTR_7g093170 PE=4 SV=1	[more]
Q9FNW9_GLYTA	6.1e-41	63.91	Seed maturation protein LEA 4 OS=Glycine tabacina PE=4 SV=1	[more]
Q9FNW3_GLYTO	1.0e-40	63.91	Seed maturation protein LEA 4 OS=Glycine tomentella PE=4 SV=1	[more]
Q9FT28_GLYTO	1.4e-40	63.91	Seed maturation protein OS=Glycine tomentella PE=2 SV=1	[more]

BLAST of CmoCh07G012900 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06760.1	1.3e-39	61.11	Late Embryogenesis Abundant 4-5	[more]

BLAST of CmoCh07G012900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457345\|ref\|XP_004146409.1\|	3.1e-62	83.63	PREDICTED: 18 kDa seed maturation protein [Cucumis sativus]	[more]
gi\|659082984\|ref\|XP_008442129.1\|	1.3e-60	82.25	PREDICTED: 18 kDa seed maturation protein [Cucumis melo]	[more]
gi\|357509939\|ref\|XP_003625258.1\|	9.3e-43	62.15	seed maturation protein [Medicago truncatula]	[more]
gi\|11612177\|gb\|AAG37441.1\|	8.7e-41	63.91	seed maturation protein LEA 4 [Glycine tabacina]	[more]
gi\|1009161531\|ref\|XP_015898949.1\|	1.5e-40	59.16	PREDICTED: 18 kDa seed maturation protein [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

Vocabulary: **Biological Process**
Term	Definition
GO:0009790	embryo development

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009790	embryo development
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009409	response to cold
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0048030	disaccharide binding
molecular_function	GO:0031210	phosphatidylcholine binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G012900.1	CmoCh07G012900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PRODOM	PD005538		coord: 8..78 score: 2.
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PFAM	PF03760	LEA_1	coord: 8..78 score: 2.9
None	No IPR available	unknown	Coil	Coil	coord: 48..79 scor
None	No IPR available	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 2..168 score: 3.1
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5	coord: 2..168 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G012900	CmaCh07G012440	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G012900	Csa4G499300	Cucumber (Chinese Long) v2	cmocuB849
CmoCh07G012900	CSPI04G20470	Wild cucumber (PI 183967)	cmocpiB868
CmoCh07G012900	MELO3C008930.2	Melon (DHL92) v3.6.1	cmomedB895
CmoCh07G012900	CsaV3_4G030630	Cucumber (Chinese Long) v3	cmocucB1013
CmoCh07G012900	Bhi03G002346	Wax gourd	cmowgoB1073
CmoCh07G012900	CsGy4G019010	Cucumber (Gy14) v2	cgybcmoB550
CmoCh07G012900	Carg12677	Silver-seed gourd	carcmoB0395

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G012900	Cucumber (Chinese Long) v3	cmocucB1001
CmoCh07G012900	Watermelon (97103) v2	cmowmbB869
CmoCh07G012900	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G012900	Cucumber (Gy14) v2	cgybcmoB539