Csa4G499300 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G499300
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Seed maturation protein LEA 4; contains IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)
Location	Chr4 : 17412774 .. 17413473 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCAGGAAAGAAGGCAGTGGAATCTATGAAGGAATCGGCTGCTAATGTTGCAGCCTCCGCTAAGGCTGGCATGGACAAGACTAAAGCTACTGTTCAAGAGAAGGTTTTTCTTTTATTTTCCTCCTCACTCCTAACTCTTTCATGTCATAAAGAGTAAATTTGAAAAGTTGCAACAAAATTGGCACTCATCTTTATCAACTGAAGTTCAAAGATTTTGGGCTTTTTTTGTTATTGAAAGTGTTTAATTATTTGAATTGGTTTTTGATTTGGTTGGATAGATGGAGAAAGTAACGGCCCGTGATCCGTTGGCAAAAGAAATTGCCGAAGAGAAGAAAGAAGCAAAGATCCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTCAGCACAACGCCGCCGTCAGACAGGCTGCTACGGGCGCAGCGGCAGCCACACATGGAACGCACCCAACAACCCACTCAACCGCCACATACTCCACCACTGGAGCCCATGGCTACACCACTGGGACCCAACAGACGTCGGCTTTGCCTGGCCACGGCACCGGCCAACCAACTGGCCTTGTGACAGAGGGTGTGGTTGGGGCGCACCCGATCGGCACCGAGACGGGCACTGGAAGGACCACAACAGCCCACAACCCTCTTGCTGGTGGTGGAACTGGGTACGGGACCGGCACCCGGACCGGGGGAAGCTATACTTAA

mRNA sequence

ATGCAGTCAGGAAAGAAGGCAGTGGAATCTATGAAGGAATCGGCTGCTAATGTTGCAGCCTCCGCTAAGGCTGGCATGGACAAGACTAAAGCTACTGTTCAAGAGAAGATGGAGAAAGTAACGGCCCGTGATCCGTTGGCAAAAGAAATTGCCGAAGAGAAGAAAGAAGCAAAGATCCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTCAGCACAACGCCGCCGTCAGACAGGCTGCTACGGGCGCAGCGGCAGCCACACATGGAACGCACCCAACAACCCACTCAACCGCCACATACTCCACCACTGGAGCCCATGGCTACACCACTGGGACCCAACAGACGTCGGCTTTGCCTGGCCACGGCACCGGCCAACCAACTGGCCTTGTGACAGAGGGTGTGGTTGGGGCGCACCCGATCGGCACCGAGACGGGCACTGGAAGGACCACAACAGCCCACAACCCTCTTGCTGGTGGTGGAACTGGGTACGGGACCGGCACCCGGACCGGGGGAAGCTATACTTAA

Coding sequence (CDS)

ATGCAGTCAGGAAAGAAGGCAGTGGAATCTATGAAGGAATCGGCTGCTAATGTTGCAGCCTCCGCTAAGGCTGGCATGGACAAGACTAAAGCTACTGTTCAAGAGAAGATGGAGAAAGTAACGGCCCGTGATCCGTTGGCAAAAGAAATTGCCGAAGAGAAGAAAGAAGCAAAGATCCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTCAGCACAACGCCGCCGTCAGACAGGCTGCTACGGGCGCAGCGGCAGCCACACATGGAACGCACCCAACAACCCACTCAACCGCCACATACTCCACCACTGGAGCCCATGGCTACACCACTGGGACCCAACAGACGTCGGCTTTGCCTGGCCACGGCACCGGCCAACCAACTGGCCTTGTGACAGAGGGTGTGGTTGGGGCGCACCCGATCGGCACCGAGACGGGCACTGGAAGGACCACAACAGCCCACAACCCTCTTGCTGGTGGTGGAACTGGGTACGGGACCGGCACCCGGACCGGGGGAAGCTATACTTAA

Protein sequence

MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIHEAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPGHGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT*

Homology

[Close]

BLAST of Csa4G499300 vs. Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-55
Identity = 112/171 (65.50%), Postives = 128/171 (74.85%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQ GKKA ES+KE+A N+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KKEAK++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHP--TTHSTATYSTTGAHGYTTGTQQTSAL 120
           +AEL+KQ ARQHN A +Q+AT A    HG H   T   TATYSTTG +G   G  QTSA+
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAM 120

Query: 121 PGHGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGG---GTGYGTG 167
           PGHGTGQPTG VTEGVVG+HPIGT  G G T TAHN  AGG     GYGTG
Sbjct: 121 PGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPNDYGYGTG 171

[Close]

BLAST of Csa4G499300 vs. Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-25
Identity = 64/112 (57.14%), Postives = 76/112 (67.86%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQSGK A  S KE+AANVAASAKAGM+KTKA++QEK EK+TA DP+ KE+A EKKE + H
Sbjct: 1   MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGT 113
           EAE  KQ A++HNAA +Q  TG    TH          +Y+TT   G+ TGT
Sbjct: 61  EAEYEKQAAKEHNAAQKQ-TTGIGTGTH----------SYTTTNVTGHRTGT 101

[Close]

BLAST of Csa4G499300 vs. Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-16
Identity = 50/117 (42.74%), Postives = 65/117 (55.56%), Query Frame = 1


Query: 13  ESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIHEAELNKQEARQH 72
           +S  + AASAKAGM+K KA++QEK++++  RDP  KE+A E+KE +  +AEL KQEAR H
Sbjct: 2   QSMKDAAASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQEARHH 61

Query: 73  NAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGY-TTGTQQTSALPGHGTGQPTG 129
           NA       G      G   T ++TA Y+     GY  TG       P  G+G  TG
Sbjct: 62  NATAGHVGGG------GIGGTGYTTAGYNIGDTGGYGGTGGHDNRGYPTAGSGYDTG 112

[Close]

BLAST of Csa4G499300 vs. Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-14
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 1


Query: 13  ESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIHEAELNKQEARQH 72
           ++  + A++AKAGM+KTKA VQEK E++T RDPL KE+A EKKE ++  AE+ K++A+  
Sbjct: 2   QTGKDAASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQ 61

Query: 73  NAAVRQAATGAAAATHGTHPTTHSTATYSTTGAH 107
           +AA +Q      AAT GT      T  Y  TG H
Sbjct: 62  HAAEKQ-----GAATTGT-----GTTGYGATGNH 85

[Close]

BLAST of Csa4G499300 vs. TrEMBL
Match: A0A0A0KZ59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499300 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 2.6e-93
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120
           EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG
Sbjct: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120

Query: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 175
           HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

[Close]

BLAST of Csa4G499300 vs. TrEMBL
Match: Q9FNW3_GLYTO (Seed maturation protein LEA 4 OS=Glycine tomentella PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-53
Identity = 117/174 (67.24%), Postives = 132/174 (75.86%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KKEAK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120
           +AEL+KQ ARQHN A +QAAT A     G H  T  TATYSTTG HG   G  QTSALPG
Sbjct: 61  QAELDKQAARQHNTAAKQAAT-AGHMGQGHH--TPGTATYSTTGEHGQPMGAHQTSALPG 120

Query: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGG-TGYGTGTRTGGSY 174
           HGTGQPTG VTEGVVG+HPIGT  G G T TAHN  AGG    YG G  TGG+Y
Sbjct: 121 HGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYG--TGGTY 169

[Close]

BLAST of Csa4G499300 vs. TrEMBL
Match: Q541U1_SOYBN (Seed maturation protein LEA 4 OS=Glycine max GN=GLYMA_19G147200 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.4e-53
Identity = 112/171 (65.50%), Postives = 130/171 (76.02%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQ GKKA ES+KE+A N+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KKEAK++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHP--TTHSTATYSTTGAHGYTTGTQQTSAL 120
           +AEL+KQ ARQHN A +Q+AT A    HG H   T   TATYSTTG +G   G  QTSA+
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAM 120

Query: 121 PGHGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGG---GTGYGTG 167
           PGHGTGQPTG VTEGVVG+HPIGT  G G T TAHN  AGG     GYGTG
Sbjct: 121 PGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPNDYGYGTG 171

[Close]

BLAST of Csa4G499300 vs. TrEMBL
Match: Q9FNW9_GLYTA (Seed maturation protein LEA 4 OS=Glycine tabacina PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.4e-53
Identity = 113/169 (66.86%), Postives = 128/169 (75.74%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KKEAK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120
           +AEL+KQ ARQHN A +QAAT   A   G    T  TATYSTTG HG   G  QTSA+PG
Sbjct: 61  QAELDKQAARQHNTAAKQAAT---AGHMGQGHNTPGTATYSTTGEHGQPMGAHQTSAMPG 120

Query: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGT---GYGTG 167
           HGTGQPTG VTEGVVG+HPIGT  G G T TAHN  AGG     GYGTG
Sbjct: 121 HGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTG 166

[Close]

BLAST of Csa4G499300 vs. TrEMBL
Match: Q9FT31_GLYTA (Seed maturation protein OS=Glycine tabacina PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.5e-53
Identity = 114/169 (67.46%), Postives = 129/169 (76.33%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KKEAK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120
           +AEL+KQ ARQHN A +QAAT A     G H  T  TATYSTTG HG   G  QTSA+PG
Sbjct: 61  QAELDKQAARQHNTAAKQAAT-AGHMGQGHH--TPETATYSTTGEHGQPMGAHQTSAMPG 120

Query: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGT---GYGTG 167
           HGTGQPTG VTEGVVG+HPIGT  G G T TAHN  AGG     GYGTG
Sbjct: 121 HGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTG 166

[Close]

BLAST of Csa4G499300 vs. TAIR10
Match: AT5G06760.1 (AT5G06760.1 Late Embryogenesis Abundant 4-5)

HSP 1 Score: 173.7 bits (439), Expect = 9.9e-44
Identity = 96/169 (56.80%), Postives = 116/169 (68.64%), Query Frame = 1


Query: 8   VESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIHEAELNKQ 67
           ++SMKE+A+N+AASAK+GMDKTKAT++EK EK+  RDP+ K++A + KE KI++AE+ K+
Sbjct: 1   MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKR 60

Query: 68  EARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPGHGTGQPT 127
           E RQHNAA+++AA        G       TAT+STTG  G+ TGT Q SALPGHGTGQ T
Sbjct: 61  ETRQHNAAMKEAAGAGTGLGLG-------TATHSTTGQVGHGTGTHQMSALPGHGTGQLT 120

Query: 128 GLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGG--TGYGTGTRTGGSYT 175
             V EG     PIG  TGTGR TTAHN   GGG  TGYG    TGG YT
Sbjct: 121 DRVVEGTAVTDPIGRNTGTGR-TTAHNTHVGGGGATGYG----TGGGYT 157

[Close]

BLAST of Csa4G499300 vs. TAIR10
Match: AT3G16460.1 (AT3G16460.1 Mannose-binding lectin superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 6.3e-06
Identity = 38/99 (38.38%), Postives = 40/99 (40.40%), Query Frame = 1


Query: 72  HNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPGHGTGQPTGLVT 131
           H + +    TG      GT      T T + TG  G  TGT   +     GTG  TG  T
Sbjct: 124 HYSPIPTGGTGTGGTGTGT-----GTGTGTGTGT-GTGTGTGTGTGTGTGGTGTGTGTGT 183

Query: 132 EGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTG 171
            G       GT TGTG T T      G GTG GTGT TG
Sbjct: 184 GGT------GTGTGTGGTGTGTGTGTGTGTGTGTGTGTG 210

HSP 2 Score: 33.1 bits (74), Expect = 2.1e-01
Identity = 34/99 (34.34%), Postives = 40/99 (40.40%), Query Frame = 1


Query: 79  AATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPGHGTGQPTGLVTEG----V 138
           +A G + +T         T   ++ G +G  +G Q  SA    G      L T G     
Sbjct: 62  SAYGKSLSTQEVITALTFTTNKTSYGPYGTKSGFQ-ISAPEATGKQISGFLGTSGNVLNT 121

Query: 139 VGAH--PIGTE-TGTGRTTTAHNPLAGGGTGYGTGTRTG 171
           +  H  PI T  TGTG T T      G GTG GTGT TG
Sbjct: 122 IDVHYSPIPTGGTGTGGTGTGTGTGTGTGTGTGTGTGTG 159

[Close]

BLAST of Csa4G499300 vs. NCBI nr
Match: gi|449457345|ref|XP_004146409.1| (PREDICTED: 18 kDa seed maturation protein [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 3.7e-93
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120
           EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG
Sbjct: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120

Query: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 175
           HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

[Close]

BLAST of Csa4G499300 vs. NCBI nr
Match: gi|659082984|ref|XP_008442129.1| (PREDICTED: 18 kDa seed maturation protein [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 5.4e-84
Identity = 162/177 (91.53%), Postives = 165/177 (93.22%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQSGKKA+ES+KESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH
Sbjct: 1   MQSGKKAMESVKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120
           EAELNKQEARQHNAAVRQAAT  AA THGTHPTTHSTAT+STTGAHGYTTGT Q SALPG
Sbjct: 61  EAELNKQEARQHNAAVRQAATVGAATTHGTHPTTHSTATHSTTGAHGYTTGTHQMSALPG 120

Query: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTR---TGGSYT 175
           HGTGQPTG VTEGVVG HPIGT TGTGRTTTAHNPLAGG TGYGTGTR   TGGSYT
Sbjct: 121 HGTGQPTGPVTEGVVGVHPIGTATGTGRTTTAHNPLAGGETGYGTGTRTGGTGGSYT 177

[Close]

BLAST of Csa4G499300 vs. NCBI nr
Match: gi|11612197|gb|AAG37451.1| (seed maturation protein LEA 4 [Glycine tomentella])

HSP 1 Score: 216.9 bits (551), Expect = 2.9e-53
Identity = 117/174 (67.24%), Postives = 132/174 (75.86%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KKEAK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120
           +AEL+KQ ARQHN A +QAAT A     G H  T  TATYSTTG HG   G  QTSALPG
Sbjct: 61  QAELDKQAARQHNTAAKQAAT-AGHMGQGHH--TPGTATYSTTGEHGQPMGAHQTSALPG 120

Query: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGG-TGYGTGTRTGGSY 174
           HGTGQPTG VTEGVVG+HPIGT  G G T TAHN  AGG    YG G  TGG+Y
Sbjct: 121 HGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYG--TGGTY 169

[Close]

BLAST of Csa4G499300 vs. NCBI nr
Match: gi|351723539|ref|NP_001238562.1| (18 kDa seed maturation protein [Glycine max])

HSP 1 Score: 216.1 bits (549), Expect = 4.9e-53
Identity = 112/171 (65.50%), Postives = 130/171 (76.02%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQ GKKA ES+KE+A N+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KKEAK++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHP--TTHSTATYSTTGAHGYTTGTQQTSAL 120
           +AEL+KQ ARQHN A +Q+AT A    HG H   T   TATYSTTG +G   G  QTSA+
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAM 120

Query: 121 PGHGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGG---GTGYGTG 167
           PGHGTGQPTG VTEGVVG+HPIGT  G G T TAHN  AGG     GYGTG
Sbjct: 121 PGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPNDYGYGTG 171

[Close]

BLAST of Csa4G499300 vs. NCBI nr
Match: gi|11612177|gb|AAG37441.1| (seed maturation protein LEA 4 [Glycine tabacina])

HSP 1 Score: 216.1 bits (549), Expect = 4.9e-53
Identity = 113/169 (66.86%), Postives = 128/169 (75.74%), Query Frame = 1


Query: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KKEAK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120
           +AEL+KQ ARQHN A +QAAT   A   G    T  TATYSTTG HG   G  QTSA+PG
Sbjct: 61  QAELDKQAARQHNTAAKQAAT---AGHMGQGHNTPGTATYSTTGEHGQPMGAHQTSAMPG 120

Query: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGT---GYGTG 167
           HGTGQPTG VTEGVVG+HPIGT  G G T TAHN  AGG     GYGTG
Sbjct: 121 HGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTG 166

The following BLAST results are available for this feature:

BLAST of Csa4G499300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PM1_SOYBN	3.1e-55	65.50	18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1	[more]
LEA11_HELAN	1.5e-25	57.14	11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1	[more]
LEA13_GOSHI	4.8e-16	42.74	Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2	[more]
LE25_SOLLC	3.5e-14	46.81	Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1	[more]

BLAST of Csa4G499300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ59_CUCSA	2.6e-93	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499300 PE=4 SV=1	[more]
Q9FNW3_GLYTO	2.0e-53	67.24	Seed maturation protein LEA 4 OS=Glycine tomentella PE=4 SV=1	[more]
Q541U1_SOYBN	3.4e-53	65.50	Seed maturation protein LEA 4 OS=Glycine max GN=GLYMA_19G147200 PE=4 SV=1	[more]
Q9FNW9_GLYTA	3.4e-53	66.86	Seed maturation protein LEA 4 OS=Glycine tabacina PE=4 SV=1	[more]
Q9FT31_GLYTA	4.5e-53	67.46	Seed maturation protein OS=Glycine tabacina PE=2 SV=1	[more]

BLAST of Csa4G499300 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06760.1	9.9e-44	56.80	Late Embryogenesis Abundant 4-5	[more]
AT3G16460.1	6.3e-06	38.38	Mannose-binding lectin superfamily protein	[more]

BLAST of Csa4G499300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457345\|ref\|XP_004146409.1\|	3.7e-93	100.00	PREDICTED: 18 kDa seed maturation protein [Cucumis sativus]	[more]
gi\|659082984\|ref\|XP_008442129.1\|	5.4e-84	91.53	PREDICTED: 18 kDa seed maturation protein [Cucumis melo]	[more]
gi\|11612197\|gb\|AAG37451.1\|	2.9e-53	67.24	seed maturation protein LEA 4 [Glycine tomentella]	[more]
gi\|351723539\|ref\|NP_001238562.1\|	4.9e-53	65.50	18 kDa seed maturation protein [Glycine max]	[more]
gi\|11612177\|gb\|AAG37441.1\|	4.9e-53	66.86	seed maturation protein LEA 4 [Glycine tabacina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

Vocabulary: **Biological Process**
Term	Definition
GO:0009790	embryo development

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009790	embryo development
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009409	response to cold
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0048030	disaccharide binding
molecular_function	GO:0031210	phosphatidylcholine binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G499300.1	Csa4G499300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PRODOM	PD005538		coord: 10..78 score: 2.
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PFAM	PF03760	LEA_1	coord: 9..77 score: 4.7
None	No IPR available	unknown	Coil	Coil	coord: 47..79 scor
None	No IPR available	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 2..174 score: 1.3
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5	coord: 2..174 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G499300	MELO3C008930	Melon (DHL92) v3.5.1	cumeB326
Csa4G499300	ClCG04G002110	Watermelon (Charleston Gray)	cuwcgB306
Csa4G499300	Lsi01G019980	Bottle gourd (USVL1VR-Ls)	culsiB250
Csa4G499300	MELO3C008930.2	Melon (DHL92) v3.6.1	cumedB312
Csa4G499300	Cla97C04G069720	Watermelon (97103) v2	cuwmbB303
Csa4G499300	Bhi03G002346	Wax gourd	cuwgoB409
Csa4G499300	CSPI04G20470	Wild cucumber (PI 183967)	cpicuB187
Csa4G499300	Cucsa.353880	Cucumber (Gy14) v1	cgycuB499
Csa4G499300	CmoCh07G012900	Cucurbita moschata (Rifu)	cmocuB849
Csa4G499300	CsGy4G019010	Cucumber (Gy14) v2	cgybcuB173
Csa4G499300	Carg12677	Silver-seed gourd	carcuB0309

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G499300	Watermelon (97103) v2	cuwmbB293
Csa4G499300	Wax gourd	cuwgoB398
Csa4G499300	Cucurbita maxima (Rimu)	cmacuB665
Csa4G499300	Watermelon (Charleston Gray)	cuwcgB296
Csa4G499300	Watermelon (97103) v1	cuwmB333
Csa4G499300	Cucurbita pepo (Zucchini)	cpecuB073