Lsi01G019980 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G019980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Seed maturation protein LEA 4
Location	chr01 : 26778593 .. 26779523 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCCTGATCATATCATAAACTTAAAAGTGAAAATTAAGAAATAGAAATGCAGTCAGGAAAGAAGGCAATGGAATCCATGAAGGAATCGGCTGCAAATGTTGCAGCCTCCGCCAAGGCCGGCATGGACAAGACTAAAGCCACTGTGCAAGAGAAGGTTTTTTTTCTCCTCTCTTCTTAATTTTCCTATATTATTATTATTTTTTTTTTTTTTTATTTACAAATATAGCAAAGTAATAGTATAGCAGTTTAGAAATATTTTAAGTACCATTTAAAACAATTATTCAAATATATATTTTTTCATTGGTTTTGATAGATGGAGAAGGTAACAGCTCATGACCCATTGGCAAAAGAAATCGCAGAGGAGAAGAAACAAGCAAAGATCCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTGAGCACAACGCCGCCGTGAGACAGGCGGCTACGGCAGCCACAGGCACAGCCACACATGGGACACACCCGACAACTCACCCAACCGCCACATACTCCACCACTGGAGCCCATGGCCACACCACTGGGACCCAGCAGATGTCCGCTCTGCCTGGGCACGGCACTGGCCAACCAACCGGCCGTGTGACCGAGGGCGTCGTTGGCGCGCACCCGATCGGAACGGAGACTGGCACTGAACGGACCGCAACAGCCCACAACCCTCGCATTGGTGGCACGGGCACCGGCACGGGCACCGGTGGTGGCTATAGTTAAGATGGGGATGTTGTTACTCTCTCTCGATATATATTATTATAAGTGGACTCTTGTTGTTTTAATCTTGAAGTCCAATGTGTTGTATTTGGTTTTAGGGTGGTTTTCATATTTCGTATGGTTGTTTGGTAATTTTATCTTTTGCACTTAGCCTTATGAAAGTGCTTTGTCAAGTGATGAATAAAACCTGTATGTAGTGTTGCCT

mRNA sequence

ATGATCTCCTGATCATATCATAAACTTAAAAGTGAAAATTAAGAAATAGAAATGCAGTCAGGAAAGAAGGCAATGGAATCCATGAAGGAATCGGCTGCAAATGTTGCAGCCTCCGCCAAGGCCGGCATGGACAAGACTAAAGCCACTGTGCAAGAGAAGATGGAGAAGGTAACAGCTCATGACCCATTGGCAAAAGAAATCGCAGAGGAGAAGAAACAAGCAAAGATCCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTGAGCACAACGCCGCCGTGAGACAGGCGGCTACGGCAGCCACAGGCACAGCCACACATGGGACACACCCGACAACTCACCCAACCGCCACATACTCCACCACTGGAGCCCATGGCCACACCACTGGGACCCAGCAGATGTCCGCTCTGCCTGGGCACGGCACTGGCCAACCAACCGGCCGTGTGACCGAGGGCGTCGTTGGCGCGCACCCGATCGGAACGGAGACTGGCACTGAACGGACCGCAACAGCCCACAACCCTCGCATTGGTGGCACGGGCACCGGCACGGGCACCGGTGGTGGCTATAGTTAAGATGGGGATGTTGTTACTCTCTCTCGATATATATTATTATAAGTGGACTCTTGTTGTTTTAATCTTGAAGTCCAATGTGTTGTATTTGGTTTTAGGGTGGTTTTCATATTTCGTATGGTTGTTTGGTAATTTTATCTTTTGCACTTAGCCTTATGAAAGTGCTTTGTCAAGTGATGAATAAAACCTGTATGTAGTGTTGCCT

Coding sequence (CDS)

ATGCAGTCAGGAAAGAAGGCAATGGAATCCATGAAGGAATCGGCTGCAAATGTTGCAGCCTCCGCCAAGGCCGGCATGGACAAGACTAAAGCCACTGTGCAAGAGAAGATGGAGAAGGTAACAGCTCATGACCCATTGGCAAAAGAAATCGCAGAGGAGAAGAAACAAGCAAAGATCCACGAGGCAGAGCTCAACAAACAGGAGGCGCGTGAGCACAACGCCGCCGTGAGACAGGCGGCTACGGCAGCCACAGGCACAGCCACACATGGGACACACCCGACAACTCACCCAACCGCCACATACTCCACCACTGGAGCCCATGGCCACACCACTGGGACCCAGCAGATGTCCGCTCTGCCTGGGCACGGCACTGGCCAACCAACCGGCCGTGTGACCGAGGGCGTCGTTGGCGCGCACCCGATCGGAACGGAGACTGGCACTGAACGGACCGCAACAGCCCACAACCCTCGCATTGGTGGCACGGGCACCGGCACGGGCACCGGTGGTGGCTATAGTTAA

Protein sequence

MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGTGTGGGYS

Homology

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BLAST of Lsi01G019980 vs. Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 109/173 (63.01%), Postives = 129/173 (74.57%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+A N+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK+AK++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAELNKQEAREHNAAVRQAATAATGTATHGTHP--TTHPTATYSTTGAHGHTTGTQQMSA 120
           +AEL+KQ AR+HN A +Q+AT A G   HG H   T   TATYSTTG +G   G  Q SA
Sbjct: 61  QAELDKQAARQHNTAAKQSATTA-GHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSA 120

Query: 121 LPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGG--TGTGTGTGG 170
           +PGHGTGQPTG VTEGVVG+HPIGT  G   TATAHN R GG     G GTGG
Sbjct: 121 MPGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPNDYGYGTGG 172

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BLAST of Lsi01G019980 vs. Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.4e-21
Identity = 67/113 (59.29%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSGK A  S KE+AANVAASAKAGM+KTKA++QEK EK+TAHDP+ KE+A EKK+ + H
Sbjct: 1   MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60

Query: 61  EAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAHGHTTGT 114
           EAE  KQ A+EHNAA +Q  T   GT TH          +Y+TT   GH TGT
Sbjct: 61  EAEYEKQAAKEHNAAQKQ--TTGIGTGTH----------SYTTTNVTGHRTGT 101

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BLAST of Lsi01G019980 vs. Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-09
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 13  ESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQEAREH 72
           ++  + A++AKAGM+KTKA VQEK E++T  DPL KE+A EKK+ ++  AE+ K++A+  
Sbjct: 2   QTGKDAASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQ 61

Query: 73  NAAVRQAATAATGTATHGTHPTTHPTATYSTTGAH 108
           +AA +Q A A TGT T G          Y  TG H
Sbjct: 62  HAAEKQGA-ATTGTGTTG----------YGATGNH 85

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BLAST of Lsi01G019980 vs. Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 5.8e-06
Identity = 62/169 (36.69%), Postives = 85/169 (50.30%), Query Frame = 1


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQ 67
           M+SMK++    AASAKAGM+K KA++QEK++++   DP  KE+A E+K+ +  +AEL KQ
Sbjct: 1   MQSMKDA----AASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQ 60

Query: 68  EAREHNAAVRQAATAATGTATHGTHPTTHPTATYS--TTGAHGHTTGTQQMSALPGHGTG 127
           EAR HNA          G        T + TA Y+   TG +G  TG       P  G+G
Sbjct: 61  EARHHNATAGHVGGGGIG-------GTGYTTAGYNIGDTGGYG-GTGGHDNRGYPTAGSG 120

Query: 128 QPTGRVTEGVVGAHPIGTET----GTERTATAHNPRIGGTGTGTGTGGG 171
             TGR  +  + +   G +T    GT       N      GT   T GG
Sbjct: 121 YDTGRQDD--LSSMGFGGDTEGAYGTTGNQDFPNAASNNAGTRRNTRGG 155

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BLAST of Lsi01G019980 vs. TrEMBL
Match: A0A0A0KZ59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499300 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.8e-66
Identity = 152/175 (86.86%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSGKKA+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAHGHTTGTQQMSALP 120
           EAELNKQEAR+HNAAVRQAAT A   ATHGTHPTTH TATYSTTGAHG+TTGTQQ SALP
Sbjct: 61  EAELNKQEARQHNAAVRQAATGA-AAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALP 120

Query: 121 GHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG---GTGTGTGTGGGYS 173
           GHGTGQPTG VTEGVVGAHPIGTETGT RT TAHNP  G   G GTGT TGG Y+
Sbjct: 121 GHGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

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BLAST of Lsi01G019980 vs. TrEMBL
Match: G7KVD4_MEDTR (Seed maturation protein OS=Medicago truncatula GN=MTR_7g093170 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-42
Identity = 111/176 (63.07%), Postives = 133/176 (75.57%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ  KKA E++KE+AAN+ ASAK+GM+KTKAT+QEK EK+TA DP+ KE+A  KK+AK++
Sbjct: 1   MQGAKKAGETIKETAANIGASAKSGMEKTKATLQEKTEKMTARDPVQKEMATHKKEAKMN 60

Query: 61  EAELNKQEAREHNAAVRQAATAATG---TATHGTHPTTHPTATYSTTGAHGHTTGTQQMS 120
           +AEL+K  AREHNAAV+Q  TAA G      H T  T   TATYSTTG +GH TG  QMS
Sbjct: 61  QAELDKLAAREHNAAVKQTTTAAAGHMGQPHHTTGTTGTGTATYSTTGNYGHPTGAHQMS 120

Query: 121 ALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGTG--TGGGY 172
           A+PGHGTGQPTG V +GVVG+HPIGT  GT+ TATAHN R+GG    TG  TGG Y
Sbjct: 121 AMPGHGTGQPTGHVVDGVVGSHPIGTNRGTDGTATAHNTRVGGNPNATGYTTGGTY 176

[Close]

BLAST of Lsi01G019980 vs. TrEMBL
Match: Q9FNW3_GLYTO (Seed maturation protein LEA 4 OS=Glycine tomentella PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.3e-41
Identity = 113/174 (64.94%), Postives = 130/174 (74.71%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK+AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMS 60

Query: 61  EAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAHGHTTGTQQMSALP 120
           +AEL+KQ AR+HN A +QAATA  G    G H  T  TATYSTTG HG   G  Q SALP
Sbjct: 61  QAELDKQAARQHNTAAKQAATA--GHMGQGHH--TPGTATYSTTGEHGQPMGAHQTSALP 120

Query: 121 GHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGT--GTGTGGGYS 173
           GHGTGQPTG VTEGVVG+HPIGT  G   TATAHN R GG     G GTGG Y+
Sbjct: 121 GHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGTYN 170

[Close]

BLAST of Lsi01G019980 vs. TrEMBL
Match: A0A103YMX2_CYNCS (Late embryogenesis abundant protein, LEA-25/LEA-D113 (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_009534 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.1e-41
Identity = 110/172 (63.95%), Postives = 127/172 (73.84%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQS K A  S+KESAAN+AASAKAGMDKTKAT+QEK E++TAHDP+ KE+A EKK+A+ +
Sbjct: 1   MQSAKNAAASVKESAANMAASAKAGMDKTKATMQEKGERMTAHDPMQKEMATEKKEARKN 60

Query: 61  EAELNKQEAREHNAAVRQAATAATGTAT-HGTHPTTHPTATYSTTGAHGHTTGTQQMSAL 120
           +AE  KQ AR+ NA  RQA  A TGT T  GTH       +YSTTGA G+ TG  QMSAL
Sbjct: 61  QAEYEKQVARDQNAVQRQATEATTGTGTGTGTH-------SYSTTGATGYPTGGHQMSAL 120

Query: 121 PGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGTGTGGGY 172
           PGHGTG+P G V EGVVG+HPIGT TGT  T   HNP+IGG   G GTGG Y
Sbjct: 121 PGHGTGEPAGHVEEGVVGSHPIGTATGTGTTLAGHNPKIGGGAGGYGTGGAY 165

[Close]

BLAST of Lsi01G019980 vs. TrEMBL
Match: Q9FT33_GLYTO (Seed maturation protein OS=Glycine tomentella PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.6e-41
Identity = 112/174 (64.37%), Postives = 129/174 (74.14%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ GKKA ES+KE+AAN+ ASAKAGM+KTKATVQEK E++TA DP+ KE+A +KK AK+ 
Sbjct: 1   MQGGKKAGESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKDAKMS 60

Query: 61  EAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAHGHTTGTQQMSALP 120
           +AEL+KQ AR+HN A +QAATA  G    G H  T  TATYSTTG HG   G  Q SA+P
Sbjct: 61  QAELDKQAARQHNTAAKQAATA--GHMGQGHH--TPGTATYSTTGEHGQPMGAHQTSAMP 120

Query: 121 GHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGT--GTGTGGGYS 173
           GHGTGQPTG VTEGVVG+HPIGT  G   TATAHN R GG     G GTGG Y+
Sbjct: 121 GHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGTYN 170

[Close]

BLAST of Lsi01G019980 vs. TAIR10
Match: AT5G06760.1 (AT5G06760.1 Late Embryogenesis Abundant 4-5)

HSP 1 Score: 151.0 bits (380), Expect = 6.8e-37
Identity = 97/166 (58.43%), Postives = 121/166 (72.89%), Query Frame = 1


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIHEAELNKQ 67
           M+SMKE+A+N+AASAK+GMDKTKAT++EK EK+   DP+ K++A + K+ KI++AE+ K+
Sbjct: 1   MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKR 60

Query: 68  EAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAHGHTTGTQQMSALPGHGTGQP 127
           E R+HNAA+++AA A TG            TAT+STTG  GH TGT QMSALPGHGTGQ 
Sbjct: 61  ETRQHNAAMKEAAGAGTGLGL--------GTATHSTTGQVGHGTGTHQMSALPGHGTGQL 120

Query: 128 TGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTG-TGTGTGGGYS 173
           T RV EG     PIG  TGT RT TAHN  +GG G TG GTGGGY+
Sbjct: 121 TDRVVEGTAVTDPIGRNTGTGRT-TAHNTHVGGGGATGYGTGGGYT 157

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BLAST of Lsi01G019980 vs. NCBI nr
Match: gi|449457345|ref|XP_004146409.1| (PREDICTED: 18 kDa seed maturation protein [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 1.1e-65
Identity = 152/175 (86.86%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSGKKA+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAHGHTTGTQQMSALP 120
           EAELNKQEAR+HNAAVRQAAT A   ATHGTHPTTH TATYSTTGAHG+TTGTQQ SALP
Sbjct: 61  EAELNKQEARQHNAAVRQAATGA-AAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALP 120

Query: 121 GHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIG---GTGTGTGTGGGYS 173
           GHGTGQPTG VTEGVVGAHPIGTETGT RT TAHNP  G   G GTGT TGG Y+
Sbjct: 121 GHGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

[Close]

BLAST of Lsi01G019980 vs. NCBI nr
Match: gi|659082984|ref|XP_008442129.1| (PREDICTED: 18 kDa seed maturation protein [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 4.0e-63
Identity = 149/178 (83.71%), Postives = 155/178 (87.08%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSGKKAMES+KESAANVAASAKAGMDKTKATVQEKMEKVTA DPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAMESVKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELNKQEAREHNAAVRQAATAATGTATHGTHPTTHPTATYSTTGAHGHTTGTQQMSALP 120
           EAELNKQEAR+HNAAVRQAAT    T THGTHPTTH TAT+STTGAHG+TTGT QMSALP
Sbjct: 61  EAELNKQEARQHNAAVRQAATVGAAT-THGTHPTTHSTATHSTTGAHGYTTGTHQMSALP 120

Query: 121 GHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGT---GTGT---GTGGGYS 173
           GHGTGQPTG VTEGVVG HPIGT TGT RT TAHNP  GG    GTGT   GTGG Y+
Sbjct: 121 GHGTGQPTGPVTEGVVGVHPIGTATGTGRTTTAHNPLAGGETGYGTGTRTGGTGGSYT 177

[Close]

BLAST of Lsi01G019980 vs. NCBI nr
Match: gi|1009161531|ref|XP_015898949.1| (PREDICTED: 18 kDa seed maturation protein [Ziziphus jujuba])

HSP 1 Score: 190.7 bits (483), Expect = 2.2e-45
Identity = 123/194 (63.40%), Postives = 140/194 (72.16%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQSG+ AMES+KE AANVAASAK+GM+KTKA +QEK E++TAHDP+ KE+A EKK  KI 
Sbjct: 1   MQSGRNAMESVKEGAANVAASAKSGMEKTKAALQEKKERMTAHDPVEKEMATEKKNEKIT 60

Query: 61  EAELNKQEAREHNAAVRQAATA--------------------ATGTATHGTHPTTHPTAT 120
           EAELNKQEAR  NAA RQAA+A                    +TGT   G +  T  TAT
Sbjct: 61  EAELNKQEARRQNAAARQAASAGGHTGSTGYTATGTTGYTNSSTGTGNTGNNTITTRTAT 120

Query: 121 YSTTGAHGHTTGTQQMSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGG 173
           YSTTGA GH TGT QMSALPGHGTGQP G+VT+GV+GAHP+GT TGT RT TAHNP  GG
Sbjct: 121 YSTTGATGHPTGTHQMSALPGHGTGQPAGQVTDGVMGAHPVGTNTGTGRT-TAHNPYTGG 180

[Close]

BLAST of Lsi01G019980 vs. NCBI nr
Match: gi|702493464|ref|XP_010036485.1| (PREDICTED: 18 kDa seed maturation protein [Eucalyptus grandis])

HSP 1 Score: 180.6 bits (457), Expect = 2.3e-42
Identity = 117/177 (66.10%), Postives = 132/177 (74.58%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ  K A  S KE+AANV ASAKAGM+KTKA  QEKMEK+TAHDP+ K++A EKK  +I 
Sbjct: 1   MQPMKNAAASAKEAAANVGASAKAGMEKTKAVAQEKMEKMTAHDPVEKQMATEKKHERID 60

Query: 61  EAELNKQEAREHNAAVRQAATAATG-----TATHGTHPTTHPTATYSTTGAHGHTTGTQQ 120
           +AELNKQ ARE NAA +Q +TAATG     T   GT  TT  TATYSTTGA G  TG  Q
Sbjct: 61  QAELNKQMAREENAASKQ-STAATGHLANTTTGPGTTTTTGTTATYSTTGATGRPTGAHQ 120

Query: 121 MSALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGTGTGGGYS 173
           MSALPGHGTGQP G+V EGV G+HPIGT TGT +T TAHN R+GGTG G GTGG Y+
Sbjct: 121 MSALPGHGTGQPAGQVVEGVAGSHPIGTNTGTGQT-TAHNTRVGGTGQGYGTGGAYN 175

[Close]

BLAST of Lsi01G019980 vs. NCBI nr
Match: gi|357509939|ref|XP_003625258.1| (seed maturation protein [Medicago truncatula])

HSP 1 Score: 179.5 bits (454), Expect = 5.0e-42
Identity = 111/176 (63.07%), Postives = 133/176 (75.57%), Query Frame = 1


Query: 1   MQSGKKAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTAHDPLAKEIAEEKKQAKIH 60
           MQ  KKA E++KE+AAN+ ASAK+GM+KTKAT+QEK EK+TA DP+ KE+A  KK+AK++
Sbjct: 1   MQGAKKAGETIKETAANIGASAKSGMEKTKATLQEKTEKMTARDPVQKEMATHKKEAKMN 60

Query: 61  EAELNKQEAREHNAAVRQAATAATG---TATHGTHPTTHPTATYSTTGAHGHTTGTQQMS 120
           +AEL+K  AREHNAAV+Q  TAA G      H T  T   TATYSTTG +GH TG  QMS
Sbjct: 61  QAELDKLAAREHNAAVKQTTTAAAGHMGQPHHTTGTTGTGTATYSTTGNYGHPTGAHQMS 120

Query: 121 ALPGHGTGQPTGRVTEGVVGAHPIGTETGTERTATAHNPRIGGTGTGTG--TGGGY 172
           A+PGHGTGQPTG V +GVVG+HPIGT  GT+ TATAHN R+GG    TG  TGG Y
Sbjct: 121 AMPGHGTGQPTGHVVDGVVGSHPIGTNRGTDGTATAHNTRVGGNPNATGYTTGGTY 176

The following BLAST results are available for this feature:

BLAST of Lsi01G019980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PM1_SOYBN	1.1e-41	63.01	18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1	[more]
LEA11_HELAN	8.4e-21	59.29	11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1	[more]
LE25_SOLLC	7.3e-09	45.26	Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1	[more]
LEA13_GOSHI	5.8e-06	36.69	Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2	[more]

BLAST of Lsi01G019980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ59_CUCSA	7.8e-66	86.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499300 PE=4 SV=1	[more]
G7KVD4_MEDTR	3.5e-42	63.07	Seed maturation protein OS=Medicago truncatula GN=MTR_7g093170 PE=4 SV=1	[more]
Q9FNW3_GLYTO	2.3e-41	64.94	Seed maturation protein LEA 4 OS=Glycine tomentella PE=4 SV=1	[more]
A0A103YMX2_CYNCS	5.1e-41	63.95	Late embryogenesis abundant protein, LEA-25/LEA-D113 (Fragment) OS=Cynara cardun...	[more]
Q9FT33_GLYTO	6.6e-41	64.37	Seed maturation protein OS=Glycine tomentella PE=2 SV=1	[more]

BLAST of Lsi01G019980 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06760.1	6.8e-37	58.43	Late Embryogenesis Abundant 4-5	[more]

BLAST of Lsi01G019980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457345\|ref\|XP_004146409.1\|	1.1e-65	86.86	PREDICTED: 18 kDa seed maturation protein [Cucumis sativus]	[more]
gi\|659082984\|ref\|XP_008442129.1\|	4.0e-63	83.71	PREDICTED: 18 kDa seed maturation protein [Cucumis melo]	[more]
gi\|1009161531\|ref\|XP_015898949.1\|	2.2e-45	63.40	PREDICTED: 18 kDa seed maturation protein [Ziziphus jujuba]	[more]
gi\|702493464\|ref\|XP_010036485.1\|	2.3e-42	66.10	PREDICTED: 18 kDa seed maturation protein [Eucalyptus grandis]	[more]
gi\|357509939\|ref\|XP_003625258.1\|	5.0e-42	63.07	seed maturation protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009790	embryo development

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009790	embryo development
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009409	response to cold
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0048030	disaccharide binding
molecular_function	GO:0031210	phosphatidylcholine binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G019980.1	Lsi01G019980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PRODOM	PD005538		coord: 8..78 score: 2.
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PFAM	PF03760	LEA_1	coord: 8..77 score: 1.3
None	No IPR available	unknown	Coil	Coil	coord: 47..79 scor
None	No IPR available	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 2..170 score: 5.6
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5	coord: 2..170 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G019980	Csa4G499300	Cucumber (Chinese Long) v2	culsiB250
Lsi01G019980	CSPI04G20470	Wild cucumber (PI 183967)	cpilsiB263
Lsi01G019980	Cucsa.353880	Cucumber (Gy14) v1	cgylsiB572
Lsi01G019980	MELO3C008930.2	Melon (DHL92) v3.6.1	lsimedB159
Lsi01G019980	CsGy4G019010	Cucumber (Gy14) v2	cgyblsiB243
Lsi01G019980	CsaV3_4G030630	Cucumber (Chinese Long) v3	cuclsiB279

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G019980	Cucurbita maxima (Rimu)	cmalsiB792
Lsi01G019980	Cucurbita moschata (Rifu)	cmolsiB589
Lsi01G019980	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G019980	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G019980	Cucurbita pepo (Zucchini)	cpelsiB399
Lsi01G019980	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G019980	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G019980	Watermelon (97103) v1	lsiwmB146
Lsi01G019980	Silver-seed gourd	carlsiB259
Lsi01G019980	Silver-seed gourd	carlsiB260
Lsi01G019980	Silver-seed gourd	carlsiB430
Lsi01G019980	Watermelon (97103) v2	lsiwmbB133
Lsi01G019980	Watermelon (97103) v2	lsiwmbB136
Lsi01G019980	Wax gourd	lsiwgoB173