Carg12323 (gene) Silver-seed gourd

NameCarg12323
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionclassical arabinogalactan protein 1-like
LocationCucurbita_argyrosperma_scaffold_074 : 319466 .. 319969 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGTTCGCATCGATTTGTTGTGCAGTTCTTTCGGCTCTGCTTTTGGCGCAATTCACTGTTTCTTCGGATTCTATAGCGGAATCCCCCGCTCCGCCGCCGCAGACAGGCGCGGATTCACCTTCGTCGCGCTCTCCTTCCATTTCCAGTCCACCGGACGCATCTCCACGGAATGCACCGGTAAGTTCTGCTCCATCGCCTTTACCATCAGATCTTGCTCCTGGTTCATCTCCGACTCGATCGCTGCCTCCTTCCTCTTCTCTGGCTCCTTCTCCACCGCCATCTGAACCTAGCGACTTTAACCGGAGCAATGTGAGTAAAGAAGACGAATCGGATGGAGAGTCGAAGGACGGGATGAGTGGAGCTCAGAAATTTGGAATCGCAGTAGGAGTGATTGCGGCGGCTGGTTTGGTTGGATTTGGAGGATTGATTTACAAGAAACGCCAAGCCAATATTCGCCGATCTGGCTATGGTTATACTGCGAGGAGAGAGATTCTCTGA

mRNA sequence

ATGGCCAAGTTCGCATCGATTTGTTGTGCAGTTCTTTCGGCTCTGCTTTTGGCGCAATTCACTGTTTCTTCGGATTCTATAGCGGAATCCCCCGCTCCGCCGCCGCAGACAGGCGCGGATTCACCTTCGTCGCGCTCTCCTTCCATTTCCAGTCCACCGGACGCATCTCCACGGAATGCACCGGTAAGTTCTGCTCCATCGCCTTTACCATCAGATCTTGCTCCTGGTTCATCTCCGACTCGATCGCTGCCTCCTTCCTCTTCTCTGGCTCCTTCTCCACCGCCATCTGAACCTAGCGACTTTAACCGGAGCAATGTGAGTAAAGAAGACGAATCGGATGGAGAGTCGAAGGACGGGATGAGTGGAGCTCAGAAATTTGGAATCGCAGTAGGAGTGATTGCGGCGGCTGGTTTGGTTGGATTTGGAGGATTGATTTACAAGAAACGCCAAGCCAATATTCGCCGATCTGGCTATGGTTATACTGCGAGGAGAGAGATTCTCTGA

Coding sequence (CDS)

ATGGCCAAGTTCGCATCGATTTGTTGTGCAGTTCTTTCGGCTCTGCTTTTGGCGCAATTCACTGTTTCTTCGGATTCTATAGCGGAATCCCCCGCTCCGCCGCCGCAGACAGGCGCGGATTCACCTTCGTCGCGCTCTCCTTCCATTTCCAGTCCACCGGACGCATCTCCACGGAATGCACCGGTAAGTTCTGCTCCATCGCCTTTACCATCAGATCTTGCTCCTGGTTCATCTCCGACTCGATCGCTGCCTCCTTCCTCTTCTCTGGCTCCTTCTCCACCGCCATCTGAACCTAGCGACTTTAACCGGAGCAATGTGAGTAAAGAAGACGAATCGGATGGAGAGTCGAAGGACGGGATGAGTGGAGCTCAGAAATTTGGAATCGCAGTAGGAGTGATTGCGGCGGCTGGTTTGGTTGGATTTGGAGGATTGATTTACAAGAAACGCCAAGCCAATATTCGCCGATCTGGCTATGGTTATACTGCGAGGAGAGAGATTCTCTGA

Protein sequence

MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSSRSPSISSPPDASPRNAPVSSAPSPLPSDLAPGSSPTRSLPPSSSLAPSPPPSEPSDFNRSNVSKEDESDGESKDGMSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL
BLAST of Carg12323 vs. NCBI nr
Match: XP_022948339.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata])

HSP 1 Score: 184.1 bits (466), Expect = 3.9e-43
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0

Query: 1   MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSXXXXXXXXXXXXXXXXX 60
           MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRSNVSKEDESDGESKDGM 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRSNVSKEDESDGESKDGM
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRSNVSKEDESDGESKDGM 120

Query: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 168
           SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL
Sbjct: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 167

BLAST of Carg12323 vs. NCBI nr
Match: XP_023523185.1 (lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 3.3e-42
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0

Query: 1   MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSXXXXXXXXXXXXXXXXX 60
           MAKFASICCAVLSALLLAQFTVSSDS+AESPAPPPQTGADSP XXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFASICCAVLSALLLAQFTVSSDSMAESPAPPPQTGADSPXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRSNVSKEDESDGESKDGM 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  FNRSNVSKEDESDGESKDGM
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDFNRSNVSKEDESDGESKDGM 120

Query: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 168
           SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL
Sbjct: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 167

BLAST of Carg12323 vs. NCBI nr
Match: XP_022998944.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima])

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0

Query: 1   MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSXXXXXXXXXXXXXXXXX 60
           MAKFASICCAVLSALLLAQFTVSSDS+AESPAPPPQTGADSP XXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFASICCAVLSALLLAQFTVSSDSMAESPAPPPQTGADSPXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRSNVSKEDESDGESKDGM 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RSNVSKEDESDGESKDGM
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNVSKEDESDGESKDGM 120

Query: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 168
           SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL
Sbjct: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 167

BLAST of Carg12323 vs. NCBI nr
Match: XP_023520008.1 (classical arabinogalactan protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 140/167 (83.83%), Postives = 148/167 (88.62%), Query Frame = 0

Query: 1   MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSXXXXXXXXXXXXXXXXX 60
           MAK  SICCAVLS LLLAQF+VS D  AESPAPPPQTG     XXXXXXXXXXXXXXXXX
Sbjct: 1   MAKVTSICCAVLSVLLLAQFSVSVDFPAESPAPPPQTG-XXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRSNVSKEDESDGESKDGM 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  R+NVSK DESD ESK+GM
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNNVSKNDESDEESKNGM 120

Query: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 168
           SGA+KFGIA+GVIAA  L+GFGGL+YKKRQ NIRRS YGYTARRE+L
Sbjct: 121 SGAKKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 166

BLAST of Carg12323 vs. NCBI nr
Match: XP_011653442.1 (PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus] >KGN64730.1 hypothetical protein Csa_1G084290 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20
Identity = 125/167 (74.85%), Postives = 135/167 (80.84%), Query Frame = 0

Query: 1   MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSXXXXXXXXXXXXXXXXX 60
           MAK AS CCA+LS LLL Q +VS+DS A+   PP         XXXXXXXXXXXXXXXXX
Sbjct: 1   MAKVASFCCALLSVLLLMQVSVSADSPADXXXPP--XXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRSNVSKEDESDGESKDGM 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX F RS+V  EDESD ESKDGM
Sbjct: 61  RNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGM 120

Query: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 168
           SGAQKFGIA+GV+AA   +GFGG++YKKRQ NIRRS YGYTARREIL
Sbjct: 121 SGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 165

BLAST of Carg12323 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 116 SKDGMSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 168
           S  GMSG +K G+A G IAA  +VG  G +YKKRQ NIRRS YGY A REIL
Sbjct: 125 SGGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRSRYGYAA-REIL 175

BLAST of Carg12323 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 104 SNVSKEDESDGESKD-GMSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTA 163
           S+ + E+ +D   +D GMSG +K GIA+G I   G +  G L+YKKR+ N+ R+ Y Y  
Sbjct: 204 SDAAGEELNDERGEDYGMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARYTYFT 263

Query: 164 RREIL 168
             E L
Sbjct: 264 EGEFL 268

BLAST of Carg12323 vs. TAIR10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 0

Query: 133 IAAAGLVGFGGLIYKKRQANIRRSGYGYTA 163
           IAAA +VGFGG + KKR+ NIRRS YGY +
Sbjct: 106 IAAASMVGFGGYVLKKRRENIRRSRYGYAS 135

BLAST of Carg12323 vs. TrEMBL
Match: tr|A0A0A0LS26|A0A0A0LS26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084290 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 125/167 (74.85%), Postives = 135/167 (80.84%), Query Frame = 0

Query: 1   MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSXXXXXXXXXXXXXXXXX 60
           MAK AS CCA+LS LLL Q +VS+DS A+   PP         XXXXXXXXXXXXXXXXX
Sbjct: 1   MAKVASFCCALLSVLLLMQVSVSADSPADXXXPP--XXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRSNVSKEDESDGESKDGM 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX F RS+V  EDESD ESKDGM
Sbjct: 61  RNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGM 120

Query: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 168
           SGAQKFGIA+GV+AA   +GFGG++YKKRQ NIRRS YGYTARREIL
Sbjct: 121 SGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 165

BLAST of Carg12323 vs. TrEMBL
Match: tr|A0A1S3CQ09|A0A1S3CQ09_CUCME (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103502943 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.5e-19
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 102 NRSNVSKEDESDGESKDGMSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYT 161
           +R+NV  E+ESD ESKDGMSGA+KFGIA+GVIAA  L+GFGG++YKKRQ NIRRS YGYT
Sbjct: 104 SRNNVISENESDEESKDGMSGAKKFGIAIGVIAAVALIGFGGMVYKKRQDNIRRSHYGYT 163

Query: 162 ARREIL 168
           ARREIL
Sbjct: 164 ARREIL 169

BLAST of Carg12323 vs. TrEMBL
Match: tr|A9P8L3|A9P8L3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G210300v3 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 105 NVSKEDESDGESKDGMSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARR 164
           N S++DE  G   +GMSG +K GIA  VI AA LVGFGGL+YKKRQ NIRRS YGY ARR
Sbjct: 111 NGSEDDEEQG--SEGMSGGKKAGIAAAVIGAACLVGFGGLVYKKRQDNIRRSAYGYAARR 170

Query: 165 EIL 168
           E+L
Sbjct: 171 ELL 171

BLAST of Carg12323 vs. TrEMBL
Match: tr|A0A2G9HBZ7|A0A2G9HBZ7_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12305 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 102 NRSNVSKEDESDGESKDGMSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYT 161
           N  N+  +D+S G    GMSG QK G+ VGVIAAA +VGFG L+YKKRQ NIRR+ YGY 
Sbjct: 129 NAGNLETKDDSSG----GMSGGQKAGVTVGVIAAACVVGFGALVYKKRQENIRRAQYGYA 188

Query: 162 ARREIL 168
           ARRE L
Sbjct: 189 ARREFL 190

BLAST of Carg12323 vs. TrEMBL
Match: tr|A0A2P5DU49|A0A2P5DU49_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 104 SNVSKED-----ESDGESKDGMSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGY 163
           S++S +D     E + E + GM+G +K GIAVGVIAAA LVG GG IYKKRQ NIRRS Y
Sbjct: 108 SDISHKDTNDRGEPEEEEESGMNGGKKAGIAVGVIAAASLVGLGGFIYKKRQDNIRRSQY 167

Query: 164 GYTARREIL 168
           GY ARRE+L
Sbjct: 168 GYAARREML 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022948339.13.9e-43100.00proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata][more]
XP_023523185.13.3e-4297.60lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo][more]
XP_022998944.11.4e-4097.60proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima][more]
XP_023520008.14.3e-2683.83classical arabinogalactan protein 5-like [Cucurbita pepo subsp. pepo][more]
XP_011653442.12.7e-2074.85PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus] >KGN64730.... [more]
Match NameE-valueIdentityDescription
AT3G45230.11.2e-0963.46hydroxyproline-rich glycoprotein family protein[more]
AT2G28440.13.5e-0641.54proline-rich family protein[more]
AT5G60630.11.1e-0466.67FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LS26|A0A0A0LS26_CUCSA1.8e-2074.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084290 PE=4 SV=1[more]
tr|A0A1S3CQ09|A0A1S3CQ09_CUCME7.5e-1977.27classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103502943 PE=4... [more]
tr|A9P8L3|A9P8L3_POPTR1.5e-1166.67Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G210300v3 PE=... [more]
tr|A0A2G9HBZ7|A0A2G9HBZ7_9LAMI3.4e-1162.12Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12305 P... [more]
tr|A0A2P5DU49|A0A2P5DU49_PARAD3.4e-1162.32Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12323-RACarg12323-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..118

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12323Carg21048Silver-seed gourdcarcarB447