Carg12323 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAAGTTCGCATCGATTTGTTGTGCAGTTCTTTCGGCTCTGCTTTTGGCGCAATTCACTGTTTCTTCGGATTCTATAGCGGAATCCCCCGCTCCGCCGCCGCAGACAGGCGCGGATTCACCTTCGTCGCGCTCTCCTTCCATTTCCAGTCCACCGGACGCATCTCCACGGAATGCACCGGTAAGTTCTGCTCCATCGCCTTTACCATCAGATCTTGCTCCTGGTTCATCTCCGACTCGATCGCTGCCTCCTTCCTCTTCTCTGGCTCCTTCTCCACCGCCATCTGAACCTAGCGACTTTAACCGGAGCAATGTGAGTAAAGAAGACGAATCGGATGGAGAGTCGAAGGACGGGATGAGTGGAGCTCAGAAATTTGGAATCGCAGTAGGAGTGATTGCGGCGGCTGGTTTGGTTGGATTTGGAGGATTGATTTACAAGAAACGCCAAGCCAATATTCGCCGATCTGGCTATGGTTATACTGCGAGGAGAGAGATTCTCTGA ATGGCCAAGTTCGCATCGATTTGTTGTGCAGTTCTTTCGGCTCTGCTTTTGGCGCAATTCACTGTTTCTTCGGATTCTATAGCGGAATCCCCCGCTCCGCCGCCGCAGACAGGCGCGGATTCACCTTCGTCGCGCTCTCCTTCCATTTCCAGTCCACCGGACGCATCTCCACGGAATGCACCGGTAAGTTCTGCTCCATCGCCTTTACCATCAGATCTTGCTCCTGGTTCATCTCCGACTCGATCGCTGCCTCCTTCCTCTTCTCTGGCTCCTTCTCCACCGCCATCTGAACCTAGCGACTTTAACCGGAGCAATGTGAGTAAAGAAGACGAATCGGATGGAGAGTCGAAGGACGGGATGAGTGGAGCTCAGAAATTTGGAATCGCAGTAGGAGTGATTGCGGCGGCTGGTTTGGTTGGATTTGGAGGATTGATTTACAAGAAACGCCAAGCCAATATTCGCCGATCTGGCTATGGTTATACTGCGAGGAGAGAGATTCTCTGA ATGGCCAAGTTCGCATCGATTTGTTGTGCAGTTCTTTCGGCTCTGCTTTTGGCGCAATTCACTGTTTCTTCGGATTCTATAGCGGAATCCCCCGCTCCGCCGCCGCAGACAGGCGCGGATTCACCTTCGTCGCGCTCTCCTTCCATTTCCAGTCCACCGGACGCATCTCCACGGAATGCACCGGTAAGTTCTGCTCCATCGCCTTTACCATCAGATCTTGCTCCTGGTTCATCTCCGACTCGATCGCTGCCTCCTTCCTCTTCTCTGGCTCCTTCTCCACCGCCATCTGAACCTAGCGACTTTAACCGGAGCAATGTGAGTAAAGAAGACGAATCGGATGGAGAGTCGAAGGACGGGATGAGTGGAGCTCAGAAATTTGGAATCGCAGTAGGAGTGATTGCGGCGGCTGGTTTGGTTGGATTTGGAGGATTGATTTACAAGAAACGCCAAGCCAATATTCGCCGATCTGGCTATGGTTATACTGCGAGGAGAGAGATTCTCTGA MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSSRSPSISSPPDASPRNAPVSSAPSPLPSDLAPGSSPTRSLPPSSSLAPSPPPSEPSDFNRSNVSKEDESDGESKDGMSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL
BLAST of Carg12323 vs. NCBI nr
Match: XP_022948339.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata]) HSP 1 Score: 184.1 bits (466), Expect = 3.9e-43 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
BLAST of Carg12323 vs. NCBI nr
Match: XP_023523185.1 (lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 181.0 bits (458), Expect = 3.3e-42 Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0
BLAST of Carg12323 vs. NCBI nr
Match: XP_022998944.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima]) HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40 Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0
BLAST of Carg12323 vs. NCBI nr
Match: XP_023520008.1 (classical arabinogalactan protein 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26 Identity = 140/167 (83.83%), Postives = 148/167 (88.62%), Query Frame = 0
BLAST of Carg12323 vs. NCBI nr
Match: XP_011653442.1 (PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus] >KGN64730.1 hypothetical protein Csa_1G084290 [Cucumis sativus]) HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20 Identity = 125/167 (74.85%), Postives = 135/167 (80.84%), Query Frame = 0
BLAST of Carg12323 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein) HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09 Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0
BLAST of Carg12323 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein) HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06 Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0
BLAST of Carg12323 vs. TAIR10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04 Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 0
BLAST of Carg12323 vs. TrEMBL
Match: tr|A0A0A0LS26|A0A0A0LS26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084290 PE=4 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20 Identity = 125/167 (74.85%), Postives = 135/167 (80.84%), Query Frame = 0
BLAST of Carg12323 vs. TrEMBL
Match: tr|A0A1S3CQ09|A0A1S3CQ09_CUCME (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103502943 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 7.5e-19 Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 0
BLAST of Carg12323 vs. TrEMBL
Match: tr|A9P8L3|A9P8L3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G210300v3 PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11 Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0
BLAST of Carg12323 vs. TrEMBL
Match: tr|A0A2G9HBZ7|A0A2G9HBZ7_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12305 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11 Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 0
BLAST of Carg12323 vs. TrEMBL
Match: tr|A0A2P5DU49|A0A2P5DU49_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11 Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |