Carg21048 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAAGGTCACATCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCTCCCGCGGAATCTCCCGCTCCGCCACCGCAGACTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCGGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCGCCTCCACCATCAGATCTTCCTCCTGGTTCGTCTCCAACTCCACCGCCACCGCCTCCTCCTTCCTCTTCTCCGTCTCCACCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCAGTTGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGATATACAGCGAGGAGAGAGCTTCTGTGA ATGGCCAAGGTCACATCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCTCCCGCGGAATCTCCCGCTCCGCCACCGCAGACTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCGGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCGCCTCCACCATCAGATCTTCCTCCTGGTTCGTCTCCAACTCCACCGCCACCGCCTCCTCCTTCCTCTTCTCCGTCTCCACCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCAGTTGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGATATACAGCGAGGAGAGAGCTTCTGTGA ATGGCCAAGGTCACATCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCTCCCGCGGAATCTCCCGCTCCGCCACCGCAGACTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCGGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCGCCTCCACCATCAGATCTTCCTCCTGGTTCGTCTCCAACTCCACCGCCACCGCCTCCTCCTTCCTCTTCTCCGTCTCCACCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCAGTTGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGATATACAGCGAGGAGAGAGCTTCTGTGA MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRNAPVSSPPAPPPSDLPPGSSPTPPPPPPPSSSPSPPPSEASDISRNNVSKNDESDEESKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL
BLAST of Carg21048 vs. NCBI nr
Match: XP_023520008.1 (classical arabinogalactan protein 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28 Identity = 152/168 (90.48%), Postives = 153/168 (91.07%), Query Frame = 0
BLAST of Carg21048 vs. NCBI nr
Match: XP_022964902.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata]) HSP 1 Score: 133.7 bits (335), Expect = 6.0e-28 Identity = 153/168 (91.07%), Postives = 153/168 (91.07%), Query Frame = 0
BLAST of Carg21048 vs. NCBI nr
Match: XP_022970449.1 (proline-rich receptor-like protein kinase PERK10 isoform X2 [Cucurbita maxima]) HSP 1 Score: 130.6 bits (327), Expect = 5.1e-27 Identity = 151/168 (89.88%), Postives = 151/168 (89.88%), Query Frame = 0
BLAST of Carg21048 vs. NCBI nr
Match: XP_022970448.1 (lysine-rich arabinogalactan protein 19-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 130.6 bits (327), Expect = 5.1e-27 Identity = 161/168 (95.83%), Postives = 161/168 (95.83%), Query Frame = 0
BLAST of Carg21048 vs. NCBI nr
Match: XP_022998944.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima]) HSP 1 Score: 114.8 bits (286), Expect = 2.9e-22 Identity = 136/168 (80.95%), Postives = 142/168 (84.52%), Query Frame = 0
BLAST of Carg21048 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein) HSP 1 Score: 68.9 bits (167), Expect = 3.3e-12 Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0
BLAST of Carg21048 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein) HSP 1 Score: 54.7 bits (130), Expect = 6.4e-08 Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0
BLAST of Carg21048 vs. TAIR10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 47.8 bits (112), Expect = 7.9e-06 Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 0
BLAST of Carg21048 vs. TrEMBL
Match: tr|A0A0A0LS26|A0A0A0LS26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084290 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 7.5e-19 Identity = 129/168 (76.79%), Postives = 135/168 (80.36%), Query Frame = 0
BLAST of Carg21048 vs. TrEMBL
Match: tr|A0A1S3CQ09|A0A1S3CQ09_CUCME (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103502943 PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17 Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of Carg21048 vs. TrEMBL
Match: tr|A0A2P5DU49|A0A2P5DU49_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12 Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 0
BLAST of Carg21048 vs. TrEMBL
Match: tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA (Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030090 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11 Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0
BLAST of Carg21048 vs. TrEMBL
Match: tr|A9P8L3|A9P8L3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G210300v3 PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11 Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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