Carg21048 (gene) Silver-seed gourd

NameCarg21048
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionclassical arabinogalactan protein 1-like
LocationCucurbita_argyrosperma_scaffold_122 : 581802 .. 582308 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGGTCACATCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCTCCCGCGGAATCTCCCGCTCCGCCACCGCAGACTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCGGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCGCCTCCACCATCAGATCTTCCTCCTGGTTCGTCTCCAACTCCACCGCCACCGCCTCCTCCTTCCTCTTCTCCGTCTCCACCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCAGTTGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGATATACAGCGAGGAGAGAGCTTCTGTGA

mRNA sequence

ATGGCCAAGGTCACATCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCTCCCGCGGAATCTCCCGCTCCGCCACCGCAGACTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCGGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCGCCTCCACCATCAGATCTTCCTCCTGGTTCGTCTCCAACTCCACCGCCACCGCCTCCTCCTTCCTCTTCTCCGTCTCCACCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCAGTTGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGATATACAGCGAGGAGAGAGCTTCTGTGA

Coding sequence (CDS)

ATGGCCAAGGTCACATCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCTCCCGCGGAATCTCCCGCTCCGCCACCGCAGACTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCGGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCGCCTCCACCATCAGATCTTCCTCCTGGTTCGTCTCCAACTCCACCGCCACCGCCTCCTCCTTCCTCTTCTCCGTCTCCACCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCAGTTGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGATATACAGCGAGGAGAGAGCTTCTGTGA

Protein sequence

MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRNAPVSSPPAPPPSDLPPGSSPTPPPPPPPSSSPSPPPSEASDISRNNVSKNDESDEESKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL
BLAST of Carg21048 vs. NCBI nr
Match: XP_023520008.1 (classical arabinogalactan protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 152/168 (90.48%), Postives = 153/168 (91.07%), Query Frame = 0

Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGXXXXXXXXXXXXXXXXXXXXXX 60
           MAKVTSICCAVLSVLLLAQFSVSVD PAESPAPPPQTG  XXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKVTSICCAVLSVLLLAQFSVSVDFPAESPAPPPQTG--XXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKNG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            ESKNG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNNVSKNDESDEESKNG 120

Query: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           MSGA+KFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL
Sbjct: 121 MSGAKKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 166

BLAST of Carg21048 vs. NCBI nr
Match: XP_022964902.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata])

HSP 1 Score: 133.7 bits (335), Expect = 6.0e-28
Identity = 153/168 (91.07%), Postives = 153/168 (91.07%), Query Frame = 0

Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGXXXXXXXXXXXXXXXXXXXXXX 60
           MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQ G            XXXXXXXXXX
Sbjct: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQAG------------XXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKNG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KNG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNG 120

Query: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL
Sbjct: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 156

BLAST of Carg21048 vs. NCBI nr
Match: XP_022970449.1 (proline-rich receptor-like protein kinase PERK10 isoform X2 [Cucurbita maxima])

HSP 1 Score: 130.6 bits (327), Expect = 5.1e-27
Identity = 151/168 (89.88%), Postives = 151/168 (89.88%), Query Frame = 0

Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGXXXXXXXXXXXXXXXXXXXXXX 60
           MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTG             XXXXXXXXX
Sbjct: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTG------------AXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKNG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 120

Query: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL
Sbjct: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 156

BLAST of Carg21048 vs. NCBI nr
Match: XP_022970448.1 (lysine-rich arabinogalactan protein 19-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 130.6 bits (327), Expect = 5.1e-27
Identity = 161/168 (95.83%), Postives = 161/168 (95.83%), Query Frame = 0

Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGXXXXXXXXXXXXXXXXXXXXXX 60
           MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTG   XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTG--AXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKNG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 120

Query: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL
Sbjct: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 166

BLAST of Carg21048 vs. NCBI nr
Match: XP_022998944.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 2.9e-22
Identity = 136/168 (80.95%), Postives = 142/168 (84.52%), Query Frame = 0

Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGXXXXXXXXXXXXXXXXXXXXXX 60
           MAK  SICCAVLS LLLAQF+VS DS AESPAPPPQTG     XXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFASICCAVLSALLLAQFTVSSDSMAESPAPPPQTG-ADSPXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKNG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            ESK+G
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNVSKEDESDGESKDG 120

Query: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           MSGAQKFGIA+GVIAA  L+GFGGL+YKKRQ NIRRS YGYTARRE+L
Sbjct: 121 MSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 167

BLAST of Carg21048 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.3e-12
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 117 SKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARREL 168
           S  GMSG +K G+A G IAAV ++G  G VYKKRQ+NIRRSRYGY AR  L
Sbjct: 125 SGGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRSRYGYAAREIL 175

BLAST of Carg21048 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein)

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-08
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0

Query: 120 GMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           GMSG +K GIAIG I  V  I  G LVYKKR+DN+ R+RY Y    E L
Sbjct: 220 GMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARYTYFTEGEFL 268

BLAST of Carg21048 vs. TAIR10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 47.8 bits (112), Expect = 7.9e-06
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 134 IAAVALIGFGGLVYKKRQDNIRRSRYGYTA 164
           IAA +++GFGG V KKR++NIRRSRYGY +
Sbjct: 106 IAAASMVGFGGYVLKKRRENIRRSRYGYAS 135

BLAST of Carg21048 vs. TrEMBL
Match: tr|A0A0A0LS26|A0A0A0LS26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084290 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.5e-19
Identity = 129/168 (76.79%), Postives = 135/168 (80.36%), Query Frame = 0

Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGXXXXXXXXXXXXXXXXXXXXXX 60
           MAKV S CCA+LSVLLL Q SVS DSPA+   PP    XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKVASFCCALLSVLLLMQVSVSADSPADXXXPP---XXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKNG 120
           X    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               ESK+G
Sbjct: 61  XRNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDG 120

Query: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           MSGAQKFGIAIGV+AAVA IGFGG+VYKKRQDNIRRS YGYTARRE+L
Sbjct: 121 MSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 165

BLAST of Carg21048 vs. TrEMBL
Match: tr|A0A1S3CQ09|A0A1S3CQ09_CUCME (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103502943 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 116 ESKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           ESK+GMSGA+KFGIAIGVIAAVALIGFGG+VYKKRQDNIRRS YGYTARRE+L
Sbjct: 117 ESKDGMSGAKKFGIAIGVIAAVALIGFGGMVYKKRQDNIRRSHYGYTARREIL 169

BLAST of Carg21048 vs. TrEMBL
Match: tr|A0A2P5DU49|A0A2P5DU49_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 116 ESKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           E ++GM+G +K GIA+GVIAA +L+G GG +YKKRQDNIRRS+YGY ARRE+L
Sbjct: 124 EEESGMNGGKKAGIAVGVIAAASLVGLGGFIYKKRQDNIRRSQYGYAARREML 176

BLAST of Carg21048 vs. TrEMBL
Match: tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA (Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030090 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 118 KNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           ++GM+G +K GIA+GVIAA  L+G GG VYKKRQDNIRRS+YGY ARRE+L
Sbjct: 125 ESGMNGGKKAGIAVGVIAAACLVGLGGFVYKKRQDNIRRSQYGYAARREML 175

BLAST of Carg21048 vs. TrEMBL
Match: tr|A9P8L3|A9P8L3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G210300v3 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 116 ESKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 169
           +   GMSG +K GIA  VI A  L+GFGGLVYKKRQDNIRRS YGY ARRELL
Sbjct: 119 QGSEGMSGGKKAGIAAAVIGAACLVGFGGLVYKKRQDNIRRSAYGYAARRELL 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023520008.11.2e-2890.48classical arabinogalactan protein 5-like [Cucurbita pepo subsp. pepo][more]
XP_022964902.16.0e-2891.07proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata][more]
XP_022970449.15.1e-2789.88proline-rich receptor-like protein kinase PERK10 isoform X2 [Cucurbita maxima][more]
XP_022970448.15.1e-2795.83lysine-rich arabinogalactan protein 19-like isoform X1 [Cucurbita maxima][more]
XP_022998944.12.9e-2280.95proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G45230.13.3e-1264.71hydroxyproline-rich glycoprotein family protein[more]
AT2G28440.16.4e-0857.14proline-rich family protein[more]
AT5G60630.17.9e-0666.67FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LS26|A0A0A0LS26_CUCSA7.5e-1976.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084290 PE=4 SV=1[more]
tr|A0A1S3CQ09|A0A1S3CQ09_CUCME1.9e-1790.57classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103502943 PE=4... [more]
tr|A0A2P5DU49|A0A2P5DU49_PARAD3.1e-1267.92Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE... [more]
tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA1.2e-1170.59Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=... [more]
tr|A9P8L3|A9P8L3_POPTR1.5e-1171.70Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G210300v3 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21048-RACarg21048-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 64..76
score: 47.69
coord: 25..37
score: 30.77
coord: 42..58
score: 37.65
coord: 76..97
score: 44.55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..95

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg21048Carg12323Silver-seed gourdcarcarB447
The following block(s) are covering this gene:
GeneOrganismBlock
Carg21048Watermelon (Charleston Gray)carwcgB0703
Carg21048Watermelon (97103) v1carwmB0726
Carg21048Watermelon (97103) v2carwmbB0760
Carg21048Wax gourdcarwgoB0860
Carg21048Wax gourdcarwgoB0856
Carg21048Cucurbita pepo (Zucchini)carcpeB1024