CmoCh13G001770 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G001770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Structural constituent of cell wall, putative
Location	Cmo_Chr13 : 1191255 .. 1193825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCATCTTTTATTCCCCTTTTTGTTGCCTCCCAGATGTGTAGACGACAATACTACAAACCAAAAATCGAAACAAAACACCGGATTTTCCCCCCTCACTAGAGAAGTCTTGAAAGAAACTAATAACATAGATGCCTATTTTATTTTTTTAGTTTTTTTCAATTTAGTTTCAATATCTCTACGTTTTAATTCTATAACAGATGAAATGCATGCACGTCCTTGGTCACTAAAACTTACAAAAGCAACGTTAATGCCCGAAAAAAAATTTGGAGATAATTTATAAGATGTAAATGGATGTTGTCGTCTTTAATTTTTTTTAATATTGTTTCTATAATAAAATAAAGATTAAGGGTTACTTAAAATTTCTTTGAGTATTTCTTATCTTAAAACTGAATTAATATAGATATTTTAGATATTTCTTATATTTTGAATTTTTTAACATTTAAGTATGGTTTTTTTTTTAAAATATTTTTAAAAATTGAAATGTAGTTTTTATATAAAGAACTAGGGTGTTATTTAAATTTCATAAAAAGGGATATTTTTTTAAGGTACTTTTTATTAATTTAGTAAGAAAAAAACTATAAAAAAGAAGCATTTTGGTTAGCATTGAAGGGGTTATAGTATCCAAAATGACCTCTCCAACCACAATTAGTGGTATTTCCCCAACATTCTATTTCTATTGGACCAAATATAATCATTTTTCATTCTCTAATCATATTCTTTTAAACAAAAAAAAAAAAAAAAAAACAACTCAATAGCGGCGAATGGTTGAATTTTTAAAATTGTTTCTAATATGTTCAAACAAGGTCAGTTTAGAATTGACACTCAGTATGTAATGTACTCTTATTTAATAACTTTTTTTTTTTTCTAATGAATTCATATATTTTTAATTTGTATTTATCTTAAACTTTTAATTTTGTATTTAATAGGTCTCCCTTCTAAATTTGCATTTGGTTAATTAAATTACAAAAAGTTTGATTATATAGATGTTTATTAGATGTGAAATTAATAACTTAAAATTGTATTTGAGTAACTTTTATACGCAACATTATTAAAAAAAACTTTTAAACTTTGAACTGTTCTTACCAATATTTTTAAACTTTTAAAAGTTAAAAAAAAAAATATATTTTTAAACTTTTAAAAGTTAAAAAAAAAAAGTATAGTAAGCGTTCTAATTCTTTTTTTAATTCTAATTTCAAATAGAAACTATTAATAAGTTTAACTTTTTAAAAAGCTTCAAAATGACTCTTACCATTAACATATGTAAAGGATTGTAGTACCACATTTAAAAAATACTCATAAACTTTTCAAAGCAACATTAATACCTTTAAACTTAAAAAAAAATTCAACGATACATTAATACCTTTAAACTTAAAAAGAAATTCTAAAGCTTGAAGACTATTCTCATATGAGGTGTAGATAGACGATTTTCGTTCAAATATTTTTAAAAAAATTTTAAAAGTTTAAAAGTATTATTAAAATATATGAACGGGTAAGGATTTTTTTTTTTTTTTTTTTTGGATAAAATATAAATTTTAGAACTATTTTTATTAATTTAACCGGGTAATAGACATTTATTTTGAATATCTTTCTAATTATTATAGGAAGATGACCTGACTATTATAGTTAGTTCCGATCCAATCACCCATATAATATTAAAAAAAGAAAAAAATAATAAAAAAATATATATTTAATTAATACAAAAAAAAAAGTAATTTGTGTTGACTTAGGCAACTCCTTAAGCATCTTCCTCTTAACTCTAAACAATCACTTTCTTTTCTCCCGGAAAATTTCAAAATCCCAACGCCGCCTCTCCCGGTGTCTCCTCCGTAACACTCGCCGGTCAGCCGTCGCCTCCGCTGCTTTCTCCTTCACTCCACCTACGTGGCTCAATCTCGGCCGTCCCTCTATTTTCCGTGCTCGTGAATCTAGGCCCCTCGCTTTTTGCTCATCCCGATACCAGATTTCGAGAACAGATCTGCTTCCAAACCAATCCACTCTCTTCTAAATTCTCGCTTTCTTTTCCACTTCCTTTCAACTGCTCGGATCGTGTTCTTCGTTCGCCTTCTTCTGGATTTTGTAGAAGATTCGAGGAAATATGGCCAAGGTCACCTCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCCCCCGCGGAATCTCCCGCTCCGCCACCGCAGGCTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCGGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCGCCTCCACCATCAGATCTTCCTCCTTCCTCTTCTCCGTCTCCACCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATTGCGGCAGTTGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGATATACAGCGAGGAGAGAGCTTCTGTGA

mRNA sequence

ATGCATCATCTTTTATTCCCCTTTTTGTTGCCTCCCAGATGTGTAGACGACAATACTACAAACCAAAAATCGAAACAAAACACCGGATTTTCCCCCCTCACTAGAGAAAAGATTCGAGGAAATATGGCCAAGGTCACCTCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCCCCCGCGGAATCTCCCGCTCCGCCACCGCAGGCTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCGGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCGCCTCCACCATCAGATCTTCCTCCTTCCTCTTCTCCGTCTCCACCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATTGCGGCAGTTGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGATATACAGCGAGGAGAGAGCTTCTGTGA

Coding sequence (CDS)

ATGCATCATCTTTTATTCCCCTTTTTGTTGCCTCCCAGATGTGTAGACGACAATACTACAAACCAAAAATCGAAACAAAACACCGGATTTTCCCCCCTCACTAGAGAAAAGATTCGAGGAAATATGGCCAAGGTCACCTCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCCCCCGCGGAATCTCCCGCTCCGCCACCGCAGGCTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCGGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCGCCTCCACCATCAGATCTTCCTCCTTCCTCTTCTCCGTCTCCACCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATTGCGGCAGTTGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGATATACAGCGAGGAGAGAGCTTCTGTGA

Homology

[Close]

BLAST of CmoCh13G001770 vs. TrEMBL
Match: A0A0A0LS26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084290 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.8e-51
Identity = 127/165 (76.97%), Postives = 137/165 (83.03%), Query Frame = 1


Query: 42  MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQAGADSPPPRSPSRISSPPAPSPRN 101
           MAKV S CCA+LSVLLL Q SVS DSPA+SPAPPP+ G DSPPPRS S ISSPP  SPRN
Sbjct: 1   MAKVASFCCALLSVLLLMQVSVSADSPADSPAPPPETGVDSPPPRSSSGISSPPDASPRN 60

Query: 102 APVSSPPAPPPSDL-------PPSSS--PSPPPSEASDISRNNVSKNDESDEESKNGMSG 161
           APV SPP+PPPSDL       PPSSS  PSPPPSEASD  R++V   DESDEESK+GMSG
Sbjct: 61  APVRSPPSPPPSDLAPTSPSPPPSSSPAPSPPPSEASDFGRSSVINEDESDEESKDGMSG 120

Query: 162 AQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
           AQKFGIAIGV+AAVA IGFGG+VYKKRQDNIRRS YGYTARRE+L
Sbjct: 121 AQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 165

[Close]

BLAST of CmoCh13G001770 vs. TrEMBL
Match: M5W0G1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012336mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 83/175 (47.43%), Postives = 104/175 (59.43%), Query Frame = 1


Query: 42  MAKVTSICCAVLSVLLLAQFSV--SVDSPAESPAPPPQAGADSPPPRSPSRISSPP---A 101
           MA+   +C  +L   LL QFS+  S   P  SP P PQ  ADSP P+SPS  S  P    
Sbjct: 1   MARFIELCSPLLLAFLLVQFSIVSSSSPPRPSPTPSPQPAADSPSPKSPSTKSPSPISLP 60

Query: 102 PSPRNAPV-----SSPPAPPPS---------DLPPSSSPSPPPSEASDISRNNVSKNDES 161
           PSP NAPV     SSPPAPP S         D PP   PSP PS  SD++ ++V+ + + 
Sbjct: 61  PSPSNAPVNSPHPSSPPAPPQSSPSQSPSADDTPP--VPSPAPSNPSDVNHSDVNADGDG 120

Query: 162 DEESKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
            + S  GMS  +K G+ +GVI  V ++G  G VYKKRQDN+RRS+YGY ARRE+L
Sbjct: 121 AKNSSGGMSPGKKAGVVLGVIVGVGVVGLAGFVYKKRQDNVRRSQYGYAARREIL 173

[Close]

BLAST of CmoCh13G001770 vs. TrEMBL
Match: A9P8L3_POPTR (Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0004s22000g PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 83/162 (51.23%), Postives = 100/162 (61.73%), Query Frame = 1


Query: 46  TSICCAVLSVLLLAQFSVSVDSPAE-SPAPPPQAGAD---SPPPRSPSRISSPPAPSPRN 105
           T I  A+L+  LL +FS S D+P E SP+P PQ       SPPP  P    SP   SP  
Sbjct: 10  TPIVYALLAFFLLLRFSSSTDTPPEQSPSPSPQQSDSPLLSPPPLLPPPSLSPETGSPSP 69

Query: 106 APVSSPPAPPPSDL------PPSSSPSPPPSEASDISRNNVSKNDESDEESKNGMSGAQK 165
             ++SPPA PPSDL      P  + P P PS ASDI+    + +++ +E+   GMSG +K
Sbjct: 70  TTMASPPASPPSDLTAHVPAPAENVPDPDPSVASDINVKAGNGSEDDEEQGSEGMSGGKK 129

Query: 166 FGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
            GIA  VI A  L+GFGGLVYKKRQDNIRRS YGY ARRELL
Sbjct: 130 AGIAAAVIGAACLVGFGGLVYKKRQDNIRRSAYGYAARRELL 171

[Close]

BLAST of CmoCh13G001770 vs. TrEMBL
Match: A0A0V0H560_SOLCH (Putative proline-rich receptor-like protein kinase PERK12-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 78/164 (47.56%), Postives = 100/164 (60.98%), Query Frame = 1


Query: 42  MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQAGAD------SPPPRSPSRISSPP 101
           MA V      +L  +LL Q  +  D PA SP+P P++GAD      SP P   S ++SPP
Sbjct: 1   MATVRMFSFTLLCAVLLVQQCICTDPPASSPSPAPESGADVASPPVSPAPSPSSNLTSPP 60

Query: 102 APSPRNAPVSSPPAPPPSDLPPSSSPSPPPSE--ASDISRNNVSKNDESDEESKNGMSGA 161
           APSP +   +S PAP P D     SPSP P+   ASDIS  +    + S E S  GM+  
Sbjct: 61  APSPSDLSPNSSPAPSPGDSTSKDSPSPAPNSEAASDISHESA---ESSKESSGGGMTSG 120

Query: 162 QKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
           +K GIA+GVIAAV  +G G +VYKKRQ NI+RS++GY ARRE+L
Sbjct: 121 KKAGIAVGVIAAVCFVGVGAIVYKKRQQNIQRSQFGYDARREIL 161

[Close]

BLAST of CmoCh13G001770 vs. TrEMBL
Match: M1CUF9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029164 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 78/164 (47.56%), Postives = 100/164 (60.98%), Query Frame = 1


Query: 42  MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQAGAD------SPPPRSPSRISSPP 101
           MA V      +L  + LAQ  +  D PA SP+P P++GAD      SP P   S ++SPP
Sbjct: 1   MATVRMFSFTLLFAVFLAQQCICTDPPASSPSPAPESGADVASPPVSPAPSPSSNLTSPP 60

Query: 102 APSPRNAPVSSPPAPPPSDLPPSSSPSPPPSE--ASDISRNNVSKNDESDEESKNGMSGA 161
           APSP +   +S PAP P D     SPSP P+   ASDIS  +    + S E S  GM+  
Sbjct: 61  APSPSDLSPNSSPAPSPGDSTSKDSPSPAPNSEAASDISHESA---ESSKESSGGGMTSG 120

Query: 162 QKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
           +K GIA+GVIAAV  +G G +VYKKRQ NI+RS++GY ARRE+L
Sbjct: 121 KKAGIAVGVIAAVCFVGVGAIVYKKRQQNIQRSQFGYDARREIL 161

[Close]

BLAST of CmoCh13G001770 vs. TAIR10
Match: AT3G45230.1 (AT3G45230.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-17
Identity = 74/170 (43.53%), Postives = 101/170 (59.41%), Query Frame = 1


Query: 48  ICCAVLSVLLLAQFSVSVDSPAESP----------APPPQAGADSPPPRSPSRISSPP-- 107
           I   +LS++L++   ++  SPA SP          +PP + G+ + P  SP   SSPP  
Sbjct: 7   IVAMMLSLVLVSGEILTKSSPAPSPDLADSPLIHASPPSKLGSHNSPAESPIEYSSPPEP 66

Query: 108 ------APSPRNAPVSSPPAPPPSDLPPSS-SPSPPPSEASDISRNNVS--KNDESDEES 167
                 +PSP N+P  SPP P  S  P SS SPSP P EASD++ ++++  + ++    S
Sbjct: 67  ETEHSPSPSPANSPSVSPPLPNDSQSPSSSASPSPSP-EASDVNHSDITGIEGEKLPSGS 126

Query: 168 KNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARREL 197
             GMSG +K G+A G IAAV ++G  G VYKKRQ+NIRRSRYGY AR  L
Sbjct: 127 GGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRSRYGYAAREIL 175

[Close]

BLAST of CmoCh13G001770 vs. TAIR10
Match: AT2G28440.1 (AT2G28440.1 proline-rich family protein)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-10
Identity = 66/171 (38.60%), Postives = 84/171 (49.12%), Query Frame = 1


Query: 62  SVSVDSP--------AESPAPP--------PQAGADSPPPRSPSRISSPPAPSPRNAPVS 121
           S  VDSP        A+SP PP        PQ+ A SP P S +   SPP P P+    S
Sbjct: 98  SPEVDSPQPPSSSPEADSPLPPSSSPEANSPQSPASSPKPESLADSPSPPPPPPQPESPS 157

Query: 122 SPPAPPPSDLP------------------PSSSPSPPPSEASDISRNNVSKNDESDEESK 181
           SP  P P+ +P                  PS +PSP    A DI  ++ +  + +DE  +
Sbjct: 158 SPSYPEPAPVPAPSDDDSDDDPEPETEYFPSPAPSPELGMAQDIKASDAAGEELNDERGE 217

Query: 182 N-GMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
           + GMSG +K GIAIG I  V  I  G LVYKKR+DN+ R+RY Y    E L
Sbjct: 218 DYGMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARYTYFTEGEFL 268

[Close]

BLAST of CmoCh13G001770 vs. NCBI nr
Match: gi|659130679|ref|XP_008465291.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-54
Identity = 134/169 (79.29%), Postives = 142/169 (84.02%), Query Frame = 1


Query: 42  MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQAGADSPPPRSPSRISSPPAPSPRN 101
           MAKV S CCAVLSVLLL Q SVS DSPAESPAPPPQ G DSPPPR+PS ISSPP  SPRN
Sbjct: 1   MAKVASFCCAVLSVLLLMQVSVSADSPAESPAPPPQTGVDSPPPRAPSSISSPPDASPRN 60

Query: 102 APVSSPPAPPPSDL-----------PPSSS--PSPPPSEASDISRNNVSKNDESDEESKN 161
           APVSSPP+PPPSDL           PPSSS  PSPPPSEASD+SRNNV   +ESDEESK+
Sbjct: 61  APVSSPPSPPPSDLAPDSSPTSPPPPPSSSPAPSPPPSEASDVSRNNVISENESDEESKD 120

Query: 162 GMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
           GMSGA+KFGIAIGVIAAVALIGFGG+VYKKRQDNIRRS YGYTARRE+L
Sbjct: 121 GMSGAKKFGIAIGVIAAVALIGFGGMVYKKRQDNIRRSHYGYTARREIL 169

[Close]

BLAST of CmoCh13G001770 vs. NCBI nr
Match: gi|778658880|ref|XP_011653442.1| (PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 4.0e-51
Identity = 127/165 (76.97%), Postives = 137/165 (83.03%), Query Frame = 1


Query: 42  MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQAGADSPPPRSPSRISSPPAPSPRN 101
           MAKV S CCA+LSVLLL Q SVS DSPA+SPAPPP+ G DSPPPRS S ISSPP  SPRN
Sbjct: 1   MAKVASFCCALLSVLLLMQVSVSADSPADSPAPPPETGVDSPPPRSSSGISSPPDASPRN 60

Query: 102 APVSSPPAPPPSDL-------PPSSS--PSPPPSEASDISRNNVSKNDESDEESKNGMSG 161
           APV SPP+PPPSDL       PPSSS  PSPPPSEASD  R++V   DESDEESK+GMSG
Sbjct: 61  APVRSPPSPPPSDLAPTSPSPPPSSSPAPSPPPSEASDFGRSSVINEDESDEESKDGMSG 120

Query: 162 AQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
           AQKFGIAIGV+AAVA IGFGG+VYKKRQDNIRRS YGYTARRE+L
Sbjct: 121 AQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 165

[Close]

BLAST of CmoCh13G001770 vs. NCBI nr
Match: gi|657952763|ref|XP_008359187.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Malus domestica])

HSP 1 Score: 122.9 bits (307), Expect = 6.4e-25
Identity = 83/161 (51.55%), Postives = 104/161 (64.60%), Query Frame = 1


Query: 42  MAKVTSICCAVLSVLLLAQFSVSVDS---PAESPAPPPQAGADSPPPRSPSRISSPPAPS 101
           M++   +   +L   LL QFS +V S   P  SP P PQ GADSP P SPS IS PP+PS
Sbjct: 1   MSRFIELLSPLLLAFLLIQFSTAVSSSSSPEPSPTPSPQPGADSPSPPSPSXISLPPSPS 60

Query: 102 --PRNAPVSSPPAPPPSDLPPSSSPSPPPSEASDISRNNVSKNDESDEESKNGMSGAQKF 161
             P ++P+ S P  PP   P  S  S PPS  SDI+ NN+S + + +E S+ GMS  +K 
Sbjct: 61  NAPADSPIPSSPPAPPQSTPSPSPDSEPPSVPSDINHNNISADGDGEESSEGGMSTGKKA 120

Query: 162 GIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
           GIA GVI  V+L+G GG VYKKRQDN+RRS+Y Y ARRE+L
Sbjct: 121 GIAFGVIVGVSLVGLGGFVYKKRQDNVRRSQYSYAARREIL 161

[Close]

BLAST of CmoCh13G001770 vs. NCBI nr
Match: gi|658039220|ref|XP_008355181.1| (PREDICTED: vegetative cell wall protein gp1-like [Malus domestica])

HSP 1 Score: 122.5 bits (306), Expect = 8.4e-25
Identity = 83/161 (51.55%), Postives = 104/161 (64.60%), Query Frame = 1


Query: 42  MAKVTSICCAVLSVLLLAQFSVSVDS---PAESPAPPPQAGADSPPPRSPSRISSPPAPS 101
           M++   +   +L   LL QFS +V S   P  SP P PQ GADSP P SPS IS PP+PS
Sbjct: 1   MSRFIELLSPLLLAFLLIQFSTAVSSSSSPEPSPTPSPQPGADSPSPPSPSPISLPPSPS 60

Query: 102 --PRNAPVSSPPAPPPSDLPPSSSPSPPPSEASDISRNNVSKNDESDEESKNGMSGAQKF 161
             P ++P+ S P  PP   P  S  S PPS  SDI+ NN+S + + +E S+ GMS  +K 
Sbjct: 61  NAPADSPIPSSPPAPPQSTPSPSPDSEPPSVPSDINHNNISADGDGEESSEGGMSTGKKA 120

Query: 162 GIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
           GIA GVI  V+L+G GG VYKKRQDN+RRS+Y Y ARRE+L
Sbjct: 121 GIAFGVIVGVSLVGLGGFVYKKRQDNVRRSQYSYAARREIL 161

[Close]

BLAST of CmoCh13G001770 vs. NCBI nr
Match: gi|694382098|ref|XP_009367083.1| (PREDICTED: classical arabinogalactan protein 4 [Pyrus x bretschneideri])

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 87/167 (52.10%), Postives = 110/167 (65.87%), Query Frame = 1


Query: 42  MAKVTSICCAVLSVLLLAQFSVSVDS---PAESPAPPPQAGADSPPPRSPSRISSPPAPS 101
           M++   +   +L   LL QFS +V S   P  SP P PQ GAD+P P SPS IS PP+PS
Sbjct: 1   MSRFIELLSPLLLAFLLVQFSTAVSSSSPPEPSPTPSPQTGADAPSPPSPSPISLPPSPS 60

Query: 102 --PRNAPV-SSPPAPPPSDLPPS-----SSPSPPPSEASDISRNNVSKNDESDEESKNGM 161
             P ++P+ SSPPAPP S   PS     S PS  PS  SDI+ NN++ + + +E S+ GM
Sbjct: 61  NAPADSPIPSSPPAPPHSTPSPSPDSEPSVPSSAPSVPSDINHNNINADGDGEEFSEGGM 120

Query: 162 SGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 198
           S  +K GIA GVI  V+L+G GG VYKKRQDN+RRS+YGY ARRE+L
Sbjct: 121 STGKKAGIAFGVIVGVSLVGLGGFVYKKRQDNVRRSQYGYAARREIL 167

The following BLAST results are available for this feature:

BLAST of CmoCh13G001770 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G001770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS26_CUCSA	2.8e-51	76.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084290 PE=4 SV=1	[more]
M5W0G1_PRUPE	3.9e-21	47.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012336mg PE=4 SV=1	[more]
A9P8L3_POPTR	1.9e-20	51.23	Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0004s22000g PE=...	[more]
A0A0V0H560_SOLCH	1.3e-19	47.56	Putative proline-rich receptor-like protein kinase PERK12-like OS=Solanum chacoe...	[more]
M1CUF9_SOLTU	1.6e-19	47.56	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029164 PE=4 SV=1	[more]

BLAST of CmoCh13G001770 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45230.1	5.2e-17	43.53	hydroxyproline-rich glycoprotein family protein	[more]
AT2G28440.1	4.7e-10	38.60	proline-rich family protein	[more]

BLAST of CmoCh13G001770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130679\|ref\|XP_008465291.1\|	1.3e-54	79.29	PREDICTED: classical arabinogalactan protein 9 [Cucumis melo]	[more]
gi\|778658880\|ref\|XP_011653442.1\|	4.0e-51	76.97	PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus]	[more]
gi\|657952763\|ref\|XP_008359187.1\|	6.4e-25	51.55	PREDICTED: proline-rich receptor-like protein kinase PERK2 [Malus domestica]	[more]
gi\|658039220\|ref\|XP_008355181.1\|	8.4e-25	51.55	PREDICTED: vegetative cell wall protein gp1-like [Malus domestica]	[more]
gi\|694382098\|ref\|XP_009367083.1\|	5.4e-24	52.10	PREDICTED: classical arabinogalactan protein 4 [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G001770.1	CmoCh13G001770.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G001770	Cucsa.226920	Cucumber (Gy14) v1	cgycmoB0634
CmoCh13G001770	CmaCh13G001730	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G001770	CmaCh01G005490	Cucurbita maxima (Rimu)	cmacmoB458
CmoCh13G001770	Csa1G084290	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G001770	MELO3C025771	Melon (DHL92) v3.5.1	cmomeB177
CmoCh13G001770	MELO3C026856	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G001770	CSPI01G12640	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G001770	Lsi02G014170	Bottle gourd (USVL1VR-Ls)	cmolsiB191
CmoCh13G001770	Cp4.1LG20g08970	Cucurbita pepo (Zucchini)	cmocpeB202
CmoCh13G001770	Cp4.1LG02g12970	Cucurbita pepo (Zucchini)	cmocpeB205
CmoCh13G001770	MELO3C026856.2	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G001770	CsaV3_1G012810	Cucumber (Chinese Long) v3	cmocucB0221
CmoCh13G001770	Cla97C03G053160	Watermelon (97103) v2	cmowmbB209
CmoCh13G001770	Bhi08G000309	Wax gourd	cmowgoB0253
CmoCh13G001770	CsGy1G012640	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G001770	Carg21048	Silver-seed gourd	carcmoB0989
CmoCh13G001770	Carg12323	Silver-seed gourd	carcmoB0594

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G001770	CmoCh01G005770	Cucurbita moschata (Rifu)	cmocmoB173

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G001770	Cucumber (Gy14) v2	cgybcmoB711
CmoCh13G001770	Melon (DHL92) v3.6.1	cmomedB197
CmoCh13G001770	Cucumber (Chinese Long) v3	cmocucB0255
CmoCh13G001770	Watermelon (97103) v2	cmowmbB204
CmoCh13G001770	Watermelon (97103) v2	cmowmbB207
CmoCh13G001770	Wax gourd	cmowgoB0237
CmoCh13G001770	Wax gourd	cmowgoB0238
CmoCh13G001770	Cucurbita maxima (Rimu)	cmacmoB543
CmoCh13G001770	Wild cucumber (PI 183967)	cmocpiB219
CmoCh13G001770	Cucumber (Chinese Long) v2	cmocuB216
CmoCh13G001770	Watermelon (Charleston Gray)	cmowcgB180
CmoCh13G001770	Watermelon (Charleston Gray)	cmowcgB183
CmoCh13G001770	Watermelon (Charleston Gray)	cmowcgB184
CmoCh13G001770	Watermelon (97103) v1	cmowmB173
CmoCh13G001770	Watermelon (97103) v1	cmowmB197
CmoCh13G001770	Watermelon (97103) v1	cmowmB200
CmoCh13G001770	Bottle gourd (USVL1VR-Ls)	cmolsiB184
CmoCh13G001770	Bottle gourd (USVL1VR-Ls)	cmolsiB186