CmaCh13G001730 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G001730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Hydroxyproline-rich glycoprotein
Location	Cma_Chr13 : 1326042 .. 1326542 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGGTCACATCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCTCCCGCGGAATCTCCCGCTCCGCCACCGCAGACTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCAGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCACCTCCACCATCAGATCTTGCTCCTGGTTCGTCTCCAACTCCACCGCCTCCTCCTTCCTCTTCTCCGTCTCCATCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCAGTCGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGCTATACAGCGAGGAGAGAGCTTCTGTGA

mRNA sequence

ATGGCCAAGGTCACATCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCTCCCGCGGAATCTCCCGCTCCGCCACCGCAGACTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCAGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCACCTCCACCATCAGATCTTGCTCCTGGTTCGTCTCCAACTCCACCGCCTCCTCCTTCCTCTTCTCCGTCTCCATCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCAGTCGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGCTATACAGCGAGGAGAGAGCTTCTGTGA

Coding sequence (CDS)

ATGGCCAAGGTCACATCAATTTGTTGCGCGGTTCTTTCGGTTCTGCTTTTGGCGCAGTTCTCTGTTTCTGTGGATTCTCCCGCGGAATCTCCCGCTCCGCCACCGCAGACTGGCGCGGATTCCCCTCCGCCGCGTTCTCCTTCGAGAATCTCCAGTCCTCCAGCTCCGTCGCCTCGGAATGCACCGGTGAGTTCTCCTCCAGCACCTCCACCATCAGATCTTGCTCCTGGTTCGTCTCCAACTCCACCGCCTCCTCCTTCCTCTTCTCCGTCTCCATCGCCATCCGAAGCTAGCGACATTAGCCGGAACAATGTGAGCAAAAACGACGAATCGGATGAAGAATCGAAGAACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCAGTCGCTTTGATTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGGTCTCGCTATGGCTATACAGCGAGGAGAGAGCTTCTGTGA

Protein sequence

MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRNAPVSSPPAPPPSDLAPGSSPTPPPPPSSSPSPSPSEASDISRNNVSKNDESDEESKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL

Homology

[Close]

BLAST of CmaCh13G001730 vs. TrEMBL
Match: A0A0A0LS26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084290 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.3e-53
Identity = 130/166 (78.31%), Postives = 143/166 (86.14%), Query Frame = 1


Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRN 60
           MAKV S CCA+LSVLLL Q SVS DSPA+SPAPPP+TG DSPPPRS S ISSPP  SPRN
Sbjct: 1   MAKVASFCCALLSVLLLMQVSVSADSPADSPAPPPETGVDSPPPRSSSGISSPPDASPRN 60

Query: 61  APVSSPPAPPPSDLAPGSSPTPPPPPSSSPSPSPSEASDISRNNVSKNDESDEESKNGMS 120
           APV SPP+PPPSDLAP +SP+PPP  S +PSP PSEASD  R++V   DESDEESK+GMS
Sbjct: 61  APVRSPPSPPPSDLAP-TSPSPPPSSSPAPSPPPSEASDFGRSSVINEDESDEESKDGMS 120

Query: 121 GAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
           GAQKFGIAIGV+AAVA IGFGG+VYKKRQDNIRRS YGYTARRE+L
Sbjct: 121 GAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 165

[Close]

BLAST of CmaCh13G001730 vs. TrEMBL
Match: W9REQ8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007659 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.7e-22
Identity = 84/162 (51.85%), Postives = 110/162 (67.90%), Query Frame = 1


Query: 11  VLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSP-RNAPVSSPPAP 70
           +L +++    +VS  SP  +P+P P  GADSP P S    S+P   +P  ++P  SPP+P
Sbjct: 12  LLLLIVCVGSAVSAQSPESAPSPAPALGADSPIPVS----SAPTVGAPVSDSPTFSPPSP 71

Query: 71  PPSDLAPGSSPTPPPPPS----SSPSPSPS-EASDISRNNVSKNDESDEESKNGMSGAQK 130
           PP   APGSSPT  PPPS     SP PSPS +ASDI+ +++  + E  E S  GMSG +K
Sbjct: 72  PPETHAPGSSPTSSPPPSPSTEKSPVPSPSPDASDINHSDMDVDGEVPEGSSGGMSGGKK 131

Query: 131 FGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
            GIA+GV+AA  L+G GG VYK+RQDNIRRS+YGY+ARRE+L
Sbjct: 132 AGIAVGVLAAACLVGLGGFVYKRRQDNIRRSQYGYSARREIL 169

[Close]

BLAST of CmaCh13G001730 vs. TrEMBL
Match: A0A068UEX3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024233001 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-20
Identity = 86/164 (52.44%), Postives = 113/164 (68.90%), Query Frame = 1


Query: 10  AVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRNAPVSSPPAP 69
           A+L +L  +  S SVD P  SP+P P+ GAD P    P + S PP+PSP    V+SPPAP
Sbjct: 10  ALLVLLFNSPVSFSVDPPQTSPSPSPEHGADVPS-LEPKK-SLPPSPSPS---VNSPPAP 69

Query: 70  PPSDLAPGSSPTPPPPPSSS-------PSPSPSEASDISRNNVSKNDESDEESKNGMSGA 129
           PP+ LAP SSP+P P P++S       P+PSPSEA D+S  + S + E+++ES  GMS  
Sbjct: 70  PPN-LAPESSPSPAPTPANSTEPLKKSPAPSPSEAGDVSHAD-SSDIEAEDESSEGMSRG 129

Query: 130 QKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
           +K GIAIGV+A V ++G G LVYKKRQ NI+R+++GY ARRELL
Sbjct: 130 KKAGIAIGVVAGVCIVGIGALVYKKRQQNIQRAQFGYAARRELL 166

[Close]

BLAST of CmaCh13G001730 vs. TrEMBL
Match: V4RT81_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029471mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-20
Identity = 85/168 (50.60%), Postives = 113/168 (67.26%), Query Frame = 1


Query: 1   MAKVTSIC-CAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPR 60
           M+  T IC C +LS+     + VS+DSPA SP  P    ADSP P SP+ +S+PP  +P 
Sbjct: 1   MSAPTLICFCLLLSL----HYVVSLDSPAPSPEHP----ADSPAP-SPAPVSAPPHHAPE 60

Query: 61  NAPVSSPPAPPPSDLAPGSSPTPPPPPSSSPSPSPSEASDISRNNVSKND-ESDEESKNG 120
            + +SSPPAPPPSDL+   SP+ PP PS  P+P+P+E SD++ +N++ +   S      G
Sbjct: 61  ISSISSPPAPPPSDLSSAPSPS-PPSPSPDPAPAPAEVSDLNHSNINADGVGSPGGDDGG 120

Query: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
           MSG +K GIA+GVI A  ++  GGLVYKKRQDNIRR++Y Y AR ELL
Sbjct: 121 MSGGKKAGIALGVILAAGVVVVGGLVYKKRQDNIRRAQYSYAARTELL 158

[Close]

BLAST of CmaCh13G001730 vs. TrEMBL
Match: M5W0G1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012336mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.2e-20
Identity = 84/176 (47.73%), Postives = 108/176 (61.36%), Query Frame = 1


Query: 1   MAKVTSICCAVLSVLLLAQFSV--SVDSPAESPAPPPQTGADSPPPRSPSRISSPP---A 60
           MA+   +C  +L   LL QFS+  S   P  SP P PQ  ADSP P+SPS  S  P    
Sbjct: 1   MARFIELCSPLLLAFLLVQFSIVSSSSPPRPSPTPSPQPAADSPSPKSPSTKSPSPISLP 60

Query: 61  PSPRNAPV-----SSPPAPPPSDLAPGSSPTPPPPPSSSPSPSPSEASDISRNNVSKNDE 120
           PSP NAPV     SSPPAPP S  +P  SP+    P   PSP+PS  SD++ ++V+ + +
Sbjct: 61  PSPSNAPVNSPHPSSPPAPPQS--SPSQSPSADDTP-PVPSPAPSNPSDVNHSDVNADGD 120

Query: 121 SDEESKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
             + S  GMS  +K G+ +GVI  V ++G  G VYKKRQDN+RRS+YGY ARRE+L
Sbjct: 121 GAKNSSGGMSPGKKAGVVLGVIVGVGVVGLAGFVYKKRQDNVRRSQYGYAARREIL 173

[Close]

BLAST of CmaCh13G001730 vs. TAIR10
Match: AT3G45230.1 (AT3G45230.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-14
Identity = 72/171 (42.11%), Postives = 102/171 (59.65%), Query Frame = 1


Query: 7   ICCAVLSVLLLAQFSVSVDSPAESP----------APPPQTGADSPPPRSPSRISSPPAP 66
           I   +LS++L++   ++  SPA SP          +PP + G+ + P  SP   SSPP P
Sbjct: 7   IVAMMLSLVLVSGEILTKSSPAPSPDLADSPLIHASPPSKLGSHNSPAESPIEYSSPPEP 66

Query: 67  SPRNAPVSSPPAPPPSDLAPGSSPTPPPPPSSSPSPSPSEASDISRNNVS--KNDESDEE 126
              ++P S  PA  PS   P  + +  P  S+SPSPSP EASD++ ++++  + ++    
Sbjct: 67  ETEHSP-SPSPANSPSVSPPLPNDSQSPSSSASPSPSP-EASDVNHSDITGIEGEKLPSG 126

Query: 127 SKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARREL 166
           S  GMSG +K G+A G IAAV ++G  G VYKKRQ+NIRRSRYGY AR  L
Sbjct: 127 SGGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRSRYGYAAREIL 175

[Close]

BLAST of CmaCh13G001730 vs. TAIR10
Match: AT2G28440.1 (AT2G28440.1 proline-rich family protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 70/171 (40.94%), Postives = 86/171 (50.29%), Query Frame = 1


Query: 21  SVSVDSP--------AESPAPP--------PQTGADSPPPRSPSRISSPPAPSPRNAPVS 80
           S  VDSP        A+SP PP        PQ+ A SP P S +   SPP P P+    S
Sbjct: 98  SPEVDSPQPPSSSPEADSPLPPSSSPEANSPQSPASSPKPESLADSPSPPPPPPQPESPS 157

Query: 81  SP------PAPPPSDLAPGSSPTPPPP--PSSSPSPSPSEASDISRNNVSKNDESDEESK 140
           SP      P P PSD      P P     PS +PSP    A DI  ++ +  + +DE  +
Sbjct: 158 SPSYPEPAPVPAPSDDDSDDDPEPETEYFPSPAPSPELGMAQDIKASDAAGEELNDERGE 217

Query: 141 N-GMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
           + GMSG +K GIAIG I  V  I  G LVYKKR+DN+ R+RY Y    E L
Sbjct: 218 DYGMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARYTYFTEGEFL 268

[Close]

BLAST of CmaCh13G001730 vs. NCBI nr
Match: gi|659130679|ref|XP_008465291.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 4.4e-59
Identity = 143/169 (84.62%), Postives = 152/169 (89.94%), Query Frame = 1


Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRN 60
           MAKV S CCAVLSVLLL Q SVS DSPAESPAPPPQTG DSPPPR+PS ISSPP  SPRN
Sbjct: 1   MAKVASFCCAVLSVLLLMQVSVSADSPAESPAPPPQTGVDSPPPRAPSSISSPPDASPRN 60

Query: 61  APVSSPPAPPPSDLAPGSSPT-PPPPPSSSPSPS--PSEASDISRNNVSKNDESDEESKN 120
           APVSSPP+PPPSDLAP SSPT PPPPPSSSP+PS  PSEASD+SRNNV   +ESDEESK+
Sbjct: 61  APVSSPPSPPPSDLAPDSSPTSPPPPPSSSPAPSPPPSEASDVSRNNVISENESDEESKD 120

Query: 121 GMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
           GMSGA+KFGIAIGVIAAVALIGFGG+VYKKRQDNIRRS YGYTARRE+L
Sbjct: 121 GMSGAKKFGIAIGVIAAVALIGFGGMVYKKRQDNIRRSHYGYTARREIL 169

[Close]

BLAST of CmaCh13G001730 vs. NCBI nr
Match: gi|778658880|ref|XP_011653442.1| (PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 6.1e-53
Identity = 130/166 (78.31%), Postives = 143/166 (86.14%), Query Frame = 1


Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRN 60
           MAKV S CCA+LSVLLL Q SVS DSPA+SPAPPP+TG DSPPPRS S ISSPP  SPRN
Sbjct: 1   MAKVASFCCALLSVLLLMQVSVSADSPADSPAPPPETGVDSPPPRSSSGISSPPDASPRN 60

Query: 61  APVSSPPAPPPSDLAPGSSPTPPPPPSSSPSPSPSEASDISRNNVSKNDESDEESKNGMS 120
           APV SPP+PPPSDLAP +SP+PPP  S +PSP PSEASD  R++V   DESDEESK+GMS
Sbjct: 61  APVRSPPSPPPSDLAP-TSPSPPPSSSPAPSPPPSEASDFGRSSVINEDESDEESKDGMS 120

Query: 121 GAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
           GAQKFGIAIGV+AAVA IGFGG+VYKKRQDNIRRS YGYTARRE+L
Sbjct: 121 GAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 165

[Close]

BLAST of CmaCh13G001730 vs. NCBI nr
Match: gi|1009115758|ref|XP_015874402.1| (PREDICTED: mucin-1 [Ziziphus jujuba])

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-24
Identity = 83/169 (49.11%), Postives = 115/169 (68.05%), Query Frame = 1


Query: 3   KVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRNAP 62
           ++   C A+L +L L +F+VSVD P   P+P P++GAD+  P S S + +   PSP   P
Sbjct: 4   RIGQFCLALLLLLSLVEFTVSVDPPESPPSPAPESGADA--PSSLSSVPTAGGPSPVQGP 63

Query: 63  V-SSPPAPPPSDLAPGSSPTPPPPP----SSSPSPSPSEASDISRNNVSKNDESDEESKN 122
           V SSPPAP P ++AP  S  P P P    S+ P+P PS ASDI+ + ++ +D   + S  
Sbjct: 64  VSSSPPAPTPGNVAPSLSHAPTPSPADEKSAVPTPEPSTASDINHSGINSDDGEKDSSSG 123

Query: 123 GMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
           GMSG +K GIA+GVIAA  ++GFGG++YKKRQ+NIRRS+Y YTARR++L
Sbjct: 124 GMSGGKKAGIAVGVIAAAFVVGFGGMLYKKRQENIRRSQYSYTARRDIL 170

[Close]

BLAST of CmaCh13G001730 vs. NCBI nr
Match: gi|657952763|ref|XP_008359187.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Malus domestica])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 89/172 (51.74%), Postives = 110/172 (63.95%), Query Frame = 1


Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDS---PAESPAPPPQTGADSPPPRSPSRISSPPAPS 60
           M++   +   +L   LL QFS +V S   P  SP P PQ GADSP P SPS IS PP+PS
Sbjct: 1   MSRFIELLSPLLLAFLLIQFSTAVSSSSSPEPSPTPSPQPGADSPSPPSPSXISLPPSPS 60

Query: 61  --PRNAPV-SSPPAPPPSDLAPGSSPTPPPPPSSSPSPSPSEASDISRNNVSKNDESDEE 120
             P ++P+ SSPPAPP S        TP P P S P   PS  SDI+ NN+S + + +E 
Sbjct: 61  NAPADSPIPSSPPAPPQS--------TPSPSPDSEP---PSVPSDINHNNISADGDGEES 120

Query: 121 SKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
           S+ GMS  +K GIA GVI  V+L+G GG VYKKRQDN+RRS+Y Y ARRE+L
Sbjct: 121 SEGGMSTGKKAGIAFGVIVGVSLVGLGGFVYKKRQDNVRRSQYSYAARREIL 161

[Close]

BLAST of CmaCh13G001730 vs. NCBI nr
Match: gi|658039220|ref|XP_008355181.1| (PREDICTED: vegetative cell wall protein gp1-like [Malus domestica])

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 89/172 (51.74%), Postives = 110/172 (63.95%), Query Frame = 1


Query: 1   MAKVTSICCAVLSVLLLAQFSVSVDS---PAESPAPPPQTGADSPPPRSPSRISSPPAPS 60
           M++   +   +L   LL QFS +V S   P  SP P PQ GADSP P SPS IS PP+PS
Sbjct: 1   MSRFIELLSPLLLAFLLIQFSTAVSSSSSPEPSPTPSPQPGADSPSPPSPSPISLPPSPS 60

Query: 61  --PRNAPV-SSPPAPPPSDLAPGSSPTPPPPPSSSPSPSPSEASDISRNNVSKNDESDEE 120
             P ++P+ SSPPAPP S        TP P P S P   PS  SDI+ NN+S + + +E 
Sbjct: 61  NAPADSPIPSSPPAPPQS--------TPSPSPDSEP---PSVPSDINHNNISADGDGEES 120

Query: 121 SKNGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 167
           S+ GMS  +K GIA GVI  V+L+G GG VYKKRQDN+RRS+Y Y ARRE+L
Sbjct: 121 SEGGMSTGKKAGIAFGVIVGVSLVGLGGFVYKKRQDNVRRSQYSYAARREIL 161

The following BLAST results are available for this feature:

BLAST of CmaCh13G001730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh13G001730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS26_CUCSA	4.3e-53	78.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084290 PE=4 SV=1	[more]
W9REQ8_9ROSA	8.7e-22	51.85	Uncharacterized protein OS=Morus notabilis GN=L484_007659 PE=4 SV=1	[more]
A0A068UEX3_COFCA	2.1e-20	52.44	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024233001 PE=4 SV=1	[more]
V4RT81_9ROSI	4.8e-20	50.60	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029471mg PE=4 SV=1	[more]
M5W0G1_PRUPE	6.2e-20	47.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012336mg PE=4 SV=1	[more]

BLAST of CmaCh13G001730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45230.1	2.0e-14	42.11	hydroxyproline-rich glycoprotein family protein	[more]
AT2G28440.1	1.5e-09	40.94	proline-rich family protein	[more]

BLAST of CmaCh13G001730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130679\|ref\|XP_008465291.1\|	4.4e-59	84.62	PREDICTED: classical arabinogalactan protein 9 [Cucumis melo]	[more]
gi\|778658880\|ref\|XP_011653442.1\|	6.1e-53	78.31	PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus]	[more]
gi\|1009115758\|ref\|XP_015874402.1\|	4.6e-24	49.11	PREDICTED: mucin-1 [Ziziphus jujuba]	[more]
gi\|657952763\|ref\|XP_008359187.1\|	1.7e-23	51.74	PREDICTED: proline-rich receptor-like protein kinase PERK2 [Malus domestica]	[more]
gi\|658039220\|ref\|XP_008355181.1\|	2.3e-23	51.74	PREDICTED: vegetative cell wall protein gp1-like [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G001730.1	CmaCh13G001730.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G001730	Cucsa.226920	Cucumber (Gy14) v1	cgycmaB0631
CmaCh13G001730	Csa1G084290	Cucumber (Chinese Long) v2	cmacuB203
CmaCh13G001730	MELO3C025771	Melon (DHL92) v3.5.1	cmameB190
CmaCh13G001730	MELO3C026856	Melon (DHL92) v3.5.1	cmameB194
CmaCh13G001730	CSPI01G12640	Wild cucumber (PI 183967)	cmacpiB205
CmaCh13G001730	CmoCh01G005770	Cucurbita moschata (Rifu)	cmacmoB226
CmaCh13G001730	CmoCh13G001770	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G001730	Lsi02G014170	Bottle gourd (USVL1VR-Ls)	cmalsiB201
CmaCh13G001730	Cp4.1LG20g08970	Cucurbita pepo (Zucchini)	cmacpeB235
CmaCh13G001730	Cp4.1LG02g12970	Cucurbita pepo (Zucchini)	cmacpeB237
CmaCh13G001730	MELO3C026856.2	Melon (DHL92) v3.6.1	cmamedB215
CmaCh13G001730	CsaV3_1G012810	Cucumber (Chinese Long) v3	cmacucB0234
CmaCh13G001730	Cla97C03G053160	Watermelon (97103) v2	cmawmbB225
CmaCh13G001730	Bhi08G000309	Wax gourd	cmawgoB0262
CmaCh13G001730	CsGy1G012640	Cucumber (Gy14) v2	cgybcmaB061
CmaCh13G001730	Carg21048	Silver-seed gourd	carcmaB1017
CmaCh13G001730	Carg12323	Silver-seed gourd	carcmaB0610

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh13G001730	CmaCh01G005490	Cucurbita maxima (Rimu)	cmacmaB220

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G001730	Watermelon (97103) v2	cmawmbB220
CmaCh13G001730	Watermelon (97103) v2	cmawmbB224
CmaCh13G001730	Wax gourd	cmawgoB0243
CmaCh13G001730	Wax gourd	cmawgoB0244
CmaCh13G001730	Wax gourd	cmawgoB0272
CmaCh13G001730	Cucurbita maxima (Rimu)	cmacmaB208
CmaCh13G001730	Cucurbita maxima (Rimu)	cmacmaB226
CmaCh13G001730	Cucurbita maxima (Rimu)	cmacmaB234
CmaCh13G001730	Wild cucumber (PI 183967)	cmacpiB232
CmaCh13G001730	Cucumber (Chinese Long) v2	cmacuB230
CmaCh13G001730	Melon (DHL92) v3.5.1	cmameB189
CmaCh13G001730	Watermelon (Charleston Gray)	cmawcgB189
CmaCh13G001730	Watermelon (Charleston Gray)	cmawcgB194
CmaCh13G001730	Watermelon (97103) v1	cmawmB185
CmaCh13G001730	Watermelon (97103) v1	cmawmB209
CmaCh13G001730	Cucurbita pepo (Zucchini)	cmacpeB226
CmaCh13G001730	Bottle gourd (USVL1VR-Ls)	cmalsiB194
CmaCh13G001730	Bottle gourd (USVL1VR-Ls)	cmalsiB196
CmaCh13G001730	Bottle gourd (USVL1VR-Ls)	cmalsiB216
CmaCh13G001730	Cucumber (Gy14) v2	cgybcmaB727
CmaCh13G001730	Melon (DHL92) v3.6.1	cmamedB210
CmaCh13G001730	Silver-seed gourd	carcmaB0469
CmaCh13G001730	Cucumber (Chinese Long) v3	cmacucB0266