CsGy1G012640 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAAGGTAGCATCATTTTGCTGTGCTCTTCTTTCGGTTCTGCTTTTAATGCAAGTCTCTGTTTCCGCGGATTCTCCGGCAGATTCTCCCGCTCCGCCGCCGGAAACTGGTGTGGATTCCCCTCCGCCGCGTTCTTCTTCTGGCATCTCTAGCCCACCAGACGCATCGCCTCGGAATGCACCGGTGCGTTCTCCTCCATCGCCTCCACCATCAGATCTTGCTCCGACTTCACCGTCTCCTCCTCCTTCCTCTTCTCCGGCTCCATCTCCACCTCCATCCGAAGCTAGCGACTTTGGCAGGAGCAGTGTGATTAACGAAGACGAATCGGATGAAGAATCAAAAGACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATCGGAGTAGTCGCAGCGGTTGCTTTTATTGGATTTGGAGGAGTGGTGTACAAGAAGCGGCAAGACAATATTCGCCGATCTCACTATGGATATACAGCGAGGAGAGAGATCCTGTGA ATGGCCAAGGTAGCATCATTTTGCTGTGCTCTTCTTTCGGTTCTGCTTTTAATGCAAGTCTCTGTTTCCGCGGATTCTCCGGCAGATTCTCCCGCTCCGCCGCCGGAAACTGGTGTGGATTCCCCTCCGCCGCGTTCTTCTTCTGGCATCTCTAGCCCACCAGACGCATCGCCTCGGAATGCACCGGTGCGTTCTCCTCCATCGCCTCCACCATCAGATCTTGCTCCGACTTCACCGTCTCCTCCTCCTTCCTCTTCTCCGGCTCCATCTCCACCTCCATCCGAAGCTAGCGACTTTGGCAGGAGCAGTGTGATTAACGAAGACGAATCGGATGAAGAATCAAAAGACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATCGGAGTAGTCGCAGCGGTTGCTTTTATTGGATTTGGAGGAGTGGTGTACAAGAAGCGGCAAGACAATATTCGCCGATCTCACTATGGATATACAGCGAGGAGAGAGATCCTGTGA ATGGCCAAGGTAGCATCATTTTGCTGTGCTCTTCTTTCGGTTCTGCTTTTAATGCAAGTCTCTGTTTCCGCGGATTCTCCGGCAGATTCTCCCGCTCCGCCGCCGGAAACTGGTGTGGATTCCCCTCCGCCGCGTTCTTCTTCTGGCATCTCTAGCCCACCAGACGCATCGCCTCGGAATGCACCGGTGCGTTCTCCTCCATCGCCTCCACCATCAGATCTTGCTCCGACTTCACCGTCTCCTCCTCCTTCCTCTTCTCCGGCTCCATCTCCACCTCCATCCGAAGCTAGCGACTTTGGCAGGAGCAGTGTGATTAACGAAGACGAATCGGATGAAGAATCAAAAGACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATCGGAGTAGTCGCAGCGGTTGCTTTTATTGGATTTGGAGGAGTGGTGTACAAGAAGCGGCAAGACAATATTCGCCGATCTCACTATGGATATACAGCGAGGAGAGAGATCCTGTGA MAKVASFCCALLSVLLLMQVSVSADSPADSPAPPPETGVDSPPPRSSSGISSPPDASPRNAPVRSPPSPPPSDLAPTSPSPPPSSSPAPSPPPSEASDFGRSSVINEDESDEESKDGMSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL
BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_011653442.1 (PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus] >KGN64730.1 hypothetical protein Csa_1G084290 [Cucumis sativus]) HSP 1 Score: 174.9 bits (442), Expect = 2.3e-40 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_008465291.1 (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo]) HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23 Identity = 141/169 (83.43%), Postives = 149/169 (88.17%), Query Frame = 0
BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_023520008.1 (classical arabinogalactan protein 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 117.5 bits (293), Expect = 4.4e-23 Identity = 132/166 (79.52%), Postives = 141/166 (84.94%), Query Frame = 0
BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_023523185.1 (lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22 Identity = 126/167 (75.45%), Postives = 136/167 (81.44%), Query Frame = 0
BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_022948339.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata]) HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21 Identity = 125/167 (74.85%), Postives = 135/167 (80.84%), Query Frame = 0
BLAST of CsGy1G012640 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein) HSP 1 Score: 65.5 bits (158), Expect = 3.6e-11 Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of CsGy1G012640 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein) HSP 1 Score: 56.2 bits (134), Expect = 2.2e-08 Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 0
BLAST of CsGy1G012640 vs. TAIR10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 44.7 bits (104), Expect = 6.6e-05 Identity = 18/30 (60.00%), Postives = 24/30 (80.00%), Query Frame = 0
BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A0A0A0LS26|A0A0A0LS26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084290 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A0A1S3CQ09|A0A1S3CQ09_CUCME (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103502943 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23 Identity = 141/169 (83.43%), Postives = 149/169 (88.17%), Query Frame = 0
BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A0A2P5DU49|A0A2P5DU49_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.3e-12 Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 0
BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A9P8L3|A9P8L3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G210300v3 PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0
BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA (Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030090 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11 Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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