CsGy1G012640 (gene) Cucumber (Gy14) v2

NameCsGy1G012640
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionclassical arabinogalactan protein 9
LocationChr1 : 8085908 .. 8086405 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGGTAGCATCATTTTGCTGTGCTCTTCTTTCGGTTCTGCTTTTAATGCAAGTCTCTGTTTCCGCGGATTCTCCGGCAGATTCTCCCGCTCCGCCGCCGGAAACTGGTGTGGATTCCCCTCCGCCGCGTTCTTCTTCTGGCATCTCTAGCCCACCAGACGCATCGCCTCGGAATGCACCGGTGCGTTCTCCTCCATCGCCTCCACCATCAGATCTTGCTCCGACTTCACCGTCTCCTCCTCCTTCCTCTTCTCCGGCTCCATCTCCACCTCCATCCGAAGCTAGCGACTTTGGCAGGAGCAGTGTGATTAACGAAGACGAATCGGATGAAGAATCAAAAGACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATCGGAGTAGTCGCAGCGGTTGCTTTTATTGGATTTGGAGGAGTGGTGTACAAGAAGCGGCAAGACAATATTCGCCGATCTCACTATGGATATACAGCGAGGAGAGAGATCCTGTGA

mRNA sequence

ATGGCCAAGGTAGCATCATTTTGCTGTGCTCTTCTTTCGGTTCTGCTTTTAATGCAAGTCTCTGTTTCCGCGGATTCTCCGGCAGATTCTCCCGCTCCGCCGCCGGAAACTGGTGTGGATTCCCCTCCGCCGCGTTCTTCTTCTGGCATCTCTAGCCCACCAGACGCATCGCCTCGGAATGCACCGGTGCGTTCTCCTCCATCGCCTCCACCATCAGATCTTGCTCCGACTTCACCGTCTCCTCCTCCTTCCTCTTCTCCGGCTCCATCTCCACCTCCATCCGAAGCTAGCGACTTTGGCAGGAGCAGTGTGATTAACGAAGACGAATCGGATGAAGAATCAAAAGACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATCGGAGTAGTCGCAGCGGTTGCTTTTATTGGATTTGGAGGAGTGGTGTACAAGAAGCGGCAAGACAATATTCGCCGATCTCACTATGGATATACAGCGAGGAGAGAGATCCTGTGA

Coding sequence (CDS)

ATGGCCAAGGTAGCATCATTTTGCTGTGCTCTTCTTTCGGTTCTGCTTTTAATGCAAGTCTCTGTTTCCGCGGATTCTCCGGCAGATTCTCCCGCTCCGCCGCCGGAAACTGGTGTGGATTCCCCTCCGCCGCGTTCTTCTTCTGGCATCTCTAGCCCACCAGACGCATCGCCTCGGAATGCACCGGTGCGTTCTCCTCCATCGCCTCCACCATCAGATCTTGCTCCGACTTCACCGTCTCCTCCTCCTTCCTCTTCTCCGGCTCCATCTCCACCTCCATCCGAAGCTAGCGACTTTGGCAGGAGCAGTGTGATTAACGAAGACGAATCGGATGAAGAATCAAAAGACGGAATGAGTGGAGCTCAGAAATTCGGAATCGCAATCGGAGTAGTCGCAGCGGTTGCTTTTATTGGATTTGGAGGAGTGGTGTACAAGAAGCGGCAAGACAATATTCGCCGATCTCACTATGGATATACAGCGAGGAGAGAGATCCTGTGA

Protein sequence

MAKVASFCCALLSVLLLMQVSVSADSPADSPAPPPETGVDSPPPRSSSGISSPPDASPRNAPVRSPPSPPPSDLAPTSPSPPPSSSPAPSPPPSEASDFGRSSVINEDESDEESKDGMSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL
BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_011653442.1 (PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus] >KGN64730.1 hypothetical protein Csa_1G084290 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 2.3e-40
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MAKVASFCCALLSVLLLMQVSVSADSPADXXXPPXXXXXXXXXXXXXXXXXXXXXXXXRN 60
           MAKVASFCCALLSVLLLMQVSVSADSPADXXXPPXXXXXXXXXXXXXXXXXXXXXXXXRN
Sbjct: 1   MAKVASFCCALLSVLLLMQVSVSADSPADXXXPPXXXXXXXXXXXXXXXXXXXXXXXXRN 60

Query: 61  APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGMSG 120
           APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGMSG
Sbjct: 61  APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGMSG 120

Query: 121 AQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           AQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL
Sbjct: 121 AQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 165

BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_008465291.1 (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 141/169 (83.43%), Postives = 149/169 (88.17%), Query Frame = 0

Query: 1   MAKVASFCCALLSVLLLMQVSVS----ADSPADXXXPPXXXXXXXXXXXXXXXXXXXXXX 60
           MAKVASFCCA+LSVLLLMQVSVS          XXX  XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKVASFCCAVLSVLLLMQVSVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXRNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKD 120
           XX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   R++VI+E+ESDEESKD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRNNVISENESDEESKD 120

Query: 121 GMSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           GMSGA+KFGIAIGV+AAVA IGFGG+VYKKRQDNIRRSHYGYTARREIL
Sbjct: 121 GMSGAKKFGIAIGVIAAVALIGFGGMVYKKRQDNIRRSHYGYTARREIL 169

BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_023520008.1 (classical arabinogalactan protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 4.4e-23
Identity = 132/166 (79.52%), Postives = 141/166 (84.94%), Query Frame = 0

Query: 1   MAKVASFCCALLSVLLLMQVSVSADSPAD-XXXPPXXXXXXXXXXXXXXXXXXXXXXXXR 60
           MAKV S CCA+LSVLLL Q SVS D PA+    PP   XXXXXXXXXXXXXXXXXXXXX 
Sbjct: 1   MAKVTSICCAVLSVLLLAQFSVSVDFPAESPAPPPQTGXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  NAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGMS 120
              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   R++V   DESDEESK+GMS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNNVSKNDESDEESKNGMS 120

Query: 121 GAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           GA+KFGIAIGV+AAVA IGFGG+VYKKRQDNIRRS YGYTARRE+L
Sbjct: 121 GAKKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 166

BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_023523185.1 (lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 126/167 (75.45%), Postives = 136/167 (81.44%), Query Frame = 0

Query: 1   MAKVASFCCALLSVLLLMQVSVSADSPADXXXPP--XXXXXXXXXXXXXXXXXXXXXXXX 60
           MAK AS CCA+LS LLL Q +VS+DS A+   PP        XXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFASICCAVLSALLLAQFTVSSDSMAESPAPPPQTGADSPXXXXXXXXXXXXXXXXXX 60

Query: 61  RNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGM 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DF RS+V  EDESD ESKDGM
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDFNRSNVSKEDESDGESKDGM 120

Query: 121 SGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           SGAQKFGIA+GV+AA   +GFGG++YKKRQ NIRRS YGYTARREIL
Sbjct: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 167

BLAST of CsGy1G012640 vs. NCBI nr
Match: XP_022948339.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 125/167 (74.85%), Postives = 135/167 (80.84%), Query Frame = 0

Query: 1   MAKVASFCCALLSVLLLMQVSVSADSPADXXXPP--XXXXXXXXXXXXXXXXXXXXXXXX 60
           MAK AS CCA+LS LLL Q +VS+DS A+   PP         XXXXXXXXXXXXXXXXX
Sbjct: 1   MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSXXXXXXXXXXXXXXXXX 60

Query: 61  RNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGM 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX F RS+V  EDESD ESKDGM
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNRSNVSKEDESDGESKDGM 120

Query: 121 SGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           SGAQKFGIA+GV+AA   +GFGG++YKKRQ NIRRS YGYTARREIL
Sbjct: 121 SGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 167

BLAST of CsGy1G012640 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-11
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 114 SKDGMSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           S  GMSG +K G+A G +AAV  +G  G VYKKRQ+NIRRS YGY A REIL
Sbjct: 125 SGGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRSRYGYAA-REIL 175

BLAST of CsGy1G012640 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-08
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 98  DFGRSSVINEDESDEESKD-GMSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHY 157
           D   S    E+ +DE  +D GMSG +K GIAIG +  V  I  G +VYKKR+DN+ R+ Y
Sbjct: 200 DIKASDAAGEELNDERGEDYGMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARY 259

Query: 158 GYTARREIL 166
            Y    E L
Sbjct: 260 TYFTEGEFL 268

BLAST of CsGy1G012640 vs. TAIR10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 44.7 bits (104), Expect = 6.6e-05
Identity = 18/30 (60.00%), Postives = 24/30 (80.00%), Query Frame = 0

Query: 131 VAAVAFIGFGGVVYKKRQDNIRRSHYGYTA 161
           +AA + +GFGG V KKR++NIRRS YGY +
Sbjct: 106 IAAASMVGFGGYVLKKRRENIRRSRYGYAS 135

BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A0A0A0LS26|A0A0A0LS26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084290 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MAKVASFCCALLSVLLLMQVSVSADSPADXXXPPXXXXXXXXXXXXXXXXXXXXXXXXRN 60
           MAKVASFCCALLSVLLLMQVSVSADSPADXXXPPXXXXXXXXXXXXXXXXXXXXXXXXRN
Sbjct: 1   MAKVASFCCALLSVLLLMQVSVSADSPADXXXPPXXXXXXXXXXXXXXXXXXXXXXXXRN 60

Query: 61  APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGMSG 120
           APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGMSG
Sbjct: 61  APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKDGMSG 120

Query: 121 AQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           AQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL
Sbjct: 121 AQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 165

BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A0A1S3CQ09|A0A1S3CQ09_CUCME (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103502943 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 141/169 (83.43%), Postives = 149/169 (88.17%), Query Frame = 0

Query: 1   MAKVASFCCALLSVLLLMQVSVS----ADSPADXXXPPXXXXXXXXXXXXXXXXXXXXXX 60
           MAKVASFCCA+LSVLLLMQVSVS          XXX  XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKVASFCCAVLSVLLLMQVSVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXRNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGRSSVINEDESDEESKD 120
           XX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   R++VI+E+ESDEESKD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRNNVISENESDEESKD 120

Query: 121 GMSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           GMSGA+KFGIAIGV+AAVA IGFGG+VYKKRQDNIRRSHYGYTARREIL
Sbjct: 121 GMSGAKKFGIAIGVIAAVALIGFGGMVYKKRQDNIRRSHYGYTARREIL 169

BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A0A2P5DU49|A0A2P5DU49_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.3e-12
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 98  DFGRSSVINEDESDEESKDGMSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYG 157
           D       +  E +EE + GM+G +K GIA+GV+AA + +G GG +YKKRQDNIRRS YG
Sbjct: 109 DISHKDTNDRGEPEEEEESGMNGGKKAGIAVGVIAAASLVGLGGFIYKKRQDNIRRSQYG 168

Query: 158 YTARREIL 166
           Y ARRE+L
Sbjct: 169 YAARREML 176

BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A9P8L3|A9P8L3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G210300v3 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 108 DESDEESKDGMSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           ++ +E+  +GMSG +K GIA  V+ A   +GFGG+VYKKRQDNIRRS YGY ARRE+L
Sbjct: 114 EDDEEQGSEGMSGGKKAGIAAAVIGAACLVGFGGLVYKKRQDNIRRSAYGYAARRELL 171

BLAST of CsGy1G012640 vs. TrEMBL
Match: tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA (Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030090 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 109 ESDEESKDGMSGAQKFGIAIGVVAAVAFIGFGGVVYKKRQDNIRRSHYGYTARREIL 166
           E +E  + GM+G +K GIA+GV+AA   +G GG VYKKRQDNIRRS YGY ARRE+L
Sbjct: 119 EPEEAEESGMNGGKKAGIAVGVIAAACLVGLGGFVYKKRQDNIRRSQYGYAARREML 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011653442.12.3e-40100.00PREDICTED: classical arabinogalactan protein 9-like [Cucumis sativus] >KGN64730.... [more]
XP_008465291.12.6e-2383.43PREDICTED: classical arabinogalactan protein 9 [Cucumis melo][more]
XP_023520008.14.4e-2379.52classical arabinogalactan protein 5-like [Cucurbita pepo subsp. pepo][more]
XP_023523185.11.7e-2275.45lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo][more]
XP_022948339.11.4e-2174.85proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G45230.13.6e-1163.46hydroxyproline-rich glycoprotein family protein[more]
AT2G28440.12.2e-0844.93proline-rich family protein[more]
AT5G60630.16.6e-0560.00FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LS26|A0A0A0LS26_CUCSA1.5e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084290 PE=4 SV=1[more]
tr|A0A1S3CQ09|A0A1S3CQ09_CUCME1.7e-2383.43classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103502943 PE=4... [more]
tr|A0A2P5DU49|A0A2P5DU49_PARAD2.3e-1254.41Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE... [more]
tr|A9P8L3|A9P8L3_POPTR2.0e-1160.34Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G210300v3 PE=... [more]
tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA2.0e-1163.16Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G012640.1CsGy1G012640.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..118