MELO3C025771.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C025771.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionHydroxyproline-rich glycoprotein
Locationchr11 : 28200226 .. 28201209 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTGGATCTAACTCCAATATTCAAATTTTCCCTCACCGACTTAACAAAAATTCCCTTTTCAGATTCTCAAAATCTTCGCAAATTCTTCTCCTCACTACGAAAATGGCGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTCCTTTCCCTGTTCATCAATGTCTCTTTCTCTTTGGAACTATCGCACCAACTTCCTCCATCTACGTCTCCTGTAAATTCTCCTCCACTACCATCTCCTACTCCATTCCCTAATGTTCCAGCCAGTTCTCCGGCCGAATCTCCTCTCCATTCTCCTCCTGCGCCTCCTCCTTCAGATCTCCCTCCCACTCCATCTCCAGCGCCTGTTCTTTCTCCTGCACCCACTCCTTCTCATTCTCTAGCGGCCGATAGTGATTCCGGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTTGTTGGAATTGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAGTGCTGCTAGGTCTTCGTTTTTGTGAGTTATTTGGAATTGAATGGCCATGGTACGGAAATCTCTGCTTAATTAGAAACGGATAGCAGTTCTATTGATTAAACAGCATTATCATTTTATTTTGACTGCGTAGTTTCGTAAACTCGTTTTATTAGAAACGGATAGCAGTCCTATTGTTTAGGAGGAGGTTGTTAGTAGCATTTCGATTTATTAGATGATTTTGAGTAGTAGTGTGATTACTTTTCCATACGATAGTTCTTAGCTTCTTGCTCAATCAGTTCGGCATTGCCGATTTCTTTGTCATTCTGCTTTGTTTCCAAACTTTTCTTTACTATATATAGTGTATCTTCTGCCTGCCTCATTTATCTCTTGTTTAATTGCTCAGAAATTTGAGGAATTATATATTTATAG

mRNA sequence

GCTTGGATCTAACTCCAATATTCAAATTTTCCCTCACCGACTTAACAAAAATTCCCTTTTCAGATTCTCAAAATCTTCGCAAATTCTTCTCCTCACTACGAAAATGGCGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTCCTTTCCCTGTTCATCAATGTCTCTTTCTCTTTGGAACTATCGCACCAACTTCCTCCATCTACGTCTCCTGTAAATTCTCCTCCACTACCATCTCCTACTCCATTCCCTAATGTTCCAGCCAGTTCTCCGGCCGAATCTCCTCTCCATTCTCCTCCTGCGCCTCCTCCTTCAGATCTCCCTCCCACTCCATCTCCAGCGCCTGTTCTTTCTCCTGCACCCACTCCTTCTCATTCTCTAGCGGCCGATAGTGATTCCGGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTTGTTGGAATTGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAGTGCTGCTAGGTCTTCGTTTTTGTGAGTTATTTGGAATTGAATGGCCATGGTACGGAAATCTCTGCTTAATTAGAAACGGATAGCAGTTCTATTGATTAAACAGCATTATCATTTTATTTTGACTGCGTAGTTTCGTAAACTCGTTTTATTAGAAACGGATAGCAGTCCTATTGTTTAGGAGGAGGTTGTTAGTAGCATTTCGATTTATTAGATGATTTTGAGTAGTAGTGTGATTACTTTTCCATACGATAGTTCTTAGCTTCTTGCTCAATCAGTTCGGCATTGCCGATTTCTTTGTCATTCTGCTTTGTTTCCAAACTTTTCTTTACTATATATAGTGTATCTTCTGCCTGCCTCATTTATCTCTTGTTTAATTGCTCAGAAATTTGAGGAATTATATATTTATAG

Coding sequence (CDS)

CTTGGATCTAACTCCAATATTCAAATTTTCCCTCACCGACTTAACAAAAATTCCCTTTTCAGATTCTCAAAATCTTCGCAAATTCTTCTCCTCACTACGAAAATGGCGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTCCTTTCCCTGTTCATCAATGTCTCTTTCTCTTTGGAACTATCGCACCAACTTCCTCCATCTACGTCTCCTGTAAATTCTCCTCCACTACCATCTCCTACTCCATTCCCTAATGTTCCAGCCAGTTCTCCGGCCGAATCTCCTCTCCATTCTCCTCCTGCGCCTCCTCCTTCAGATCTCCCTCCCACTCCATCTCCAGCGCCTGTTCTTTCTCCTGCACCCACTCCTTCTCATTCTCTAGCGGCCGATAGTGATTCCGGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGCGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTTGTTGGAATTGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAGTGCTGCTAGGTCTTCGTTTTTGTGA

Protein sequence

LGSNSNIQIFPHRLNKNSLFRFSKSSQILLLTTKMAKTIHLSCLLFIFLSLFINVSFSLELSHQLPPSTSPVNSPPLPSPTPFPNVPASSPAESPLHSPPAPPPSDLPPTPSPAPVLSPAPTPSHSLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGSAARSSFL
BLAST of MELO3C025771.2 vs. NCBI nr
Match: XP_008463942.2 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 126 SLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNI 185
           SLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNI
Sbjct: 92  SLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNI 151

Query: 186 RRSQYGSAARSSFL 200
           RRSQYGSAARSSFL
Sbjct: 152 RRSQYGSAARSSFL 165

BLAST of MELO3C025771.2 vs. NCBI nr
Match: XP_011656995.1 (PREDICTED: proline-rich receptor-like protein kinase PERK9 [Cucumis sativus] >KGN46836.1 hypothetical protein Csa_6G140840 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 3.9e-26
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 132 DSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 191
           DS NITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG
Sbjct: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157

Query: 192 SAARSSFL 200
           +AARSSFL
Sbjct: 158 NAARSSFL 165

BLAST of MELO3C025771.2 vs. NCBI nr
Match: XP_022986136.1 (proline-rich receptor-like protein kinase PERK12 [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-20
Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 130 DSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQ 189
           DSD  N  S  GG +SE SKGGMNGGKKAGIAVGVIAA CFVGIGG VYKKRQDNIRRSQ
Sbjct: 94  DSDFRNSISNNGGVESESSKGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQ 153

Query: 190 YGSAARSSFL 200
           YG+AARSSFL
Sbjct: 154 YGNAARSSFL 163

BLAST of MELO3C025771.2 vs. NCBI nr
Match: XP_022995398.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-19
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 135 NITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGSAA 194
           +I +GGGGE +E SKGGMNGGKKAGIAVGVIAA CFVGIGG VYKKRQDNIRRSQ+G+AA
Sbjct: 105 SIANGGGGE-TEASKGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQFGNAA 164

Query: 195 RSSFL 200
           RSSFL
Sbjct: 165 RSSFL 168

BLAST of MELO3C025771.2 vs. NCBI nr
Match: XP_022958106.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 148 SKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGSAARSSFL 200
           SKGGMNGGKKAGIAVGVIAA CFVG+GG VYKKRQDNIRRSQ+G+AARSSFL
Sbjct: 117 SKGGMNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168

BLAST of MELO3C025771.2 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-13
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 129 ADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRS 188
           +D +  +IT   G +    S GGM+GGKK G+A G IAA+C VG+ GFVYKKRQ+NIRRS
Sbjct: 106 SDVNHSDITGIEGEKLPSGSGGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRS 165

Query: 189 QYGSAAR 196
           +YG AAR
Sbjct: 166 RYGYAAR 172

BLAST of MELO3C025771.2 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 0

Query: 138 SGGGGEDSEVSKG---GMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGSAA 197
           S   GE+    +G   GM+G +KAGIA+G I  +  + IG  VYKKR+DN+ R++Y    
Sbjct: 204 SDAAGEELNDERGEDYGMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARYTYFT 263

Query: 198 RSSFL 200
              FL
Sbjct: 264 EGEFL 268

BLAST of MELO3C025771.2 vs. TAIR10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 43.1 bits (100), Expect = 2.3e-04
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0

Query: 165 IAALCFVGIGGFVYKKRQDNIRRSQYGSAARSSF 199
           IAA   VG GG+V KKR++NIRRS+YG A+   F
Sbjct: 106 IAAASMVGFGGYVLKKRRENIRRSRYGYASTEFF 139

BLAST of MELO3C025771.2 vs. TrEMBL
Match: tr|A0A1S3CKF5|A0A1S3CKF5_CUCME (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103501947 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 126 SLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNI 185
           SLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNI
Sbjct: 92  SLAADSDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNI 151

Query: 186 RRSQYGSAARSSFL 200
           RRSQYGSAARSSFL
Sbjct: 152 RRSQYGSAARSSFL 165

BLAST of MELO3C025771.2 vs. TrEMBL
Match: tr|A0A0A0KGE9|A0A0A0KGE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140840 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.6e-26
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 132 DSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 191
           DS NITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG
Sbjct: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157

Query: 192 SAARSSFL 200
           +AARSSFL
Sbjct: 158 NAARSSFL 165

BLAST of MELO3C025771.2 vs. TrEMBL
Match: tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA (Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030090 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.8e-15
Identity = 45/58 (77.59%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 142 GEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGSAARSSFL 200
           GE  E  + GMNGGKKAGIAVGVIAA C VG+GGFVYKKRQDNIRRSQYG AAR   L
Sbjct: 118 GEPEEAEESGMNGGKKAGIAVGVIAAACLVGLGGFVYKKRQDNIRRSQYGYAARREML 175

BLAST of MELO3C025771.2 vs. TrEMBL
Match: tr|A0A2P5R992|A0A2P5R992_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19718 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 141 GGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGSAARSSFL 200
           G E+     GGM+GGKKAGI  GV+AA C VG GG VYKKRQ+NIRRSQYG AARS FL
Sbjct: 103 GSEEKSRGDGGMSGGKKAGIVFGVVAAACLVGFGGLVYKKRQENIRRSQYGYAARSEFL 161

BLAST of MELO3C025771.2 vs. TrEMBL
Match: tr|A0A2P5DU49|A0A2P5DU49_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 131 SDSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQY 190
           SD  +  +   GE  E  + GMNGGKKAGIAVGVIAA   VG+GGF+YKKRQDNIRRSQY
Sbjct: 108 SDISHKDTNDRGEPEEEEESGMNGGKKAGIAVGVIAAASLVGLGGFIYKKRQDNIRRSQY 167

Query: 191 GSAARSSFL 200
           G AAR   L
Sbjct: 168 GYAARREML 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008463942.24.5e-30100.00PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis ... [more]
XP_011656995.13.9e-2697.06PREDICTED: proline-rich receptor-like protein kinase PERK9 [Cucumis sativus] >KG... [more]
XP_022986136.13.2e-2082.86proline-rich receptor-like protein kinase PERK12 [Cucurbita maxima][more]
XP_022995398.13.5e-1984.62lysine-rich arabinogalactan protein 18-like [Cucurbita maxima][more]
XP_022958106.11.6e-1690.38lysine-rich arabinogalactan protein 18-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G45230.14.6e-1358.21hydroxyproline-rich glycoprotein family protein[more]
AT2G28440.11.3e-0441.54proline-rich family protein[more]
AT5G60630.12.3e-0458.82FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CKF5|A0A1S3CKF5_CUCME3.0e-30100.00pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3... [more]
tr|A0A0A0KGE9|A0A0A0KGE9_CUCSA2.6e-2697.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140840 PE=4 SV=1[more]
tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA7.8e-1577.59Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=... [more]
tr|A0A2P5R992|A0A2P5R992_GOSBA1.2e-1269.49Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19718 PE=4 SV... [more]
tr|A0A2P5DU49|A0A2P5DU49_PARAD1.2e-1265.22Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025771.2.1MELO3C025771.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..150

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C025771.2MELO3C026856.2Melon (DHL92) v3.6.1medmedB034