CsGy6G011600 (gene) Cucumber (Gy14) v2

NameCsGy6G011600
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionpollen-specific leucine-rich repeat extensin-like protein 1
LocationChr6 : 10086617 .. 10087819 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTTGTTTCTTTGTTCAACAATGTCTCTTTCTCTTTGGAACAACCACAGCAACTTCCTCCATCTCCATCTCCTGTAAATTCTCCTCCACTACCTTCTCCTACTCCACTCCCTCACGCTCCAGCCAGTTCTCCGGTCGAATCTCCTCTGCATTCTCCTCCTGCACCTCCTCCTTCAGATCTCCCTCATACTCCATCTCCAGCGCCTCTTCTTCCTCCTGTATCCTCTCCTTCTATTTCACCAGCGGCTGATAGTGATTCCAGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGTGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTCGTTGGAATAGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAATGCTGCTAGGTCTTCGTTTTTGTAAGTTATTTGGAATGGAATCGCCATGGTACGGAAAATTTCTGCTTAATTAGAAACGGATAGCAGTTCTATTGATTAGACAGCATTATCATTTTATTTTGACTGCGTAGTTTGGTAAACTCGTTTTATCAGAAACGGATGGCAGTCCTATTGTTTAGGAGGAGGTTGTTAGTAGCATTTCGATTTATTAGATGATTTTGTGTAGTAGTGTGATTACTTTTCCATACTATAGTTCTTAGCTTCTTGCTCAATCAGTTAGGCATTGCCGCTTTCTTTGTCATTCTGCTTTGTTTCCAAACATTTCTTTACTATATATAATGTATCTTCTCCCTGCCTCATTTATCTCTTGTTTAATTGCTCAGACATTTGAGGAATTATATGTTTATAATTCTTACTTGAATTGTCTGTGTGGATTCGGATTTCTCAATTTTTAATTGCGTTTTTCATTTTTTTTAATTAAGAATCATTCTTCCATCTATATCAAGGGTTAATATTTTTCCTATTTCACATTGGAGAACCTGTGATTAATAATGCAAACTGCAAACTAACATAACTTTTAGATTTCATTGTTTATATTATCTTAAGAAACATGGACTATGCTGAGGCTTTGCACTTATTAGCTCATTTTGCTTTGAATTGCCATTATTCGTTGTGTTGGACTGATAATTTTCCGGATTGGTTGGCCGGGTGTGTCGGGGCTGACCGTTGA

mRNA sequence

ATGGTGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTTGTTTCTTTGTTCAACAATGTCTCTTTCTCTTTGGAACAACCACAGCAACTTCCTCCATCTCCATCTCCTGTAAATTCTCCTCCACTACCTTCTCCTACTCCACTCCCTCACGCTCCAGCCAGTTCTCCGGTCGAATCTCCTCTGCATTCTCCTCCTGCACCTCCTCCTTCAGATCTCCCTCATACTCCATCTCCAGCGCCTCTTCTTCCTCCTGTATCCTCTCCTTCTATTTCACCAGCGGCTGATAGTGATTCCAGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGTGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTCGTTGGAATAGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAATGCTGCTAGGTCTTCGTTTTTAAACATGGACTATGCTGAGGCTTTGCACTTATTAGCTCATTTTGCTTTGAATTGCCATTATTCGTTGTGTTGGACTGATAATTTTCCGGATTGGTTGGCCGGGTGTGTCGGGGCTGACCGTTGA

Coding sequence (CDS)

ATGGTGAAAACCATTCATCTCTCTTGTCTTCTTTTCATCTTTGTTTCTTTGTTCAACAATGTCTCTTTCTCTTTGGAACAACCACAGCAACTTCCTCCATCTCCATCTCCTGTAAATTCTCCTCCACTACCTTCTCCTACTCCACTCCCTCACGCTCCAGCCAGTTCTCCGGTCGAATCTCCTCTGCATTCTCCTCCTGCACCTCCTCCTTCAGATCTCCCTCATACTCCATCTCCAGCGCCTCTTCTTCCTCCTGTATCCTCTCCTTCTATTTCACCAGCGGCTGATAGTGATTCCAGTAATATTACTTCCGGTGGCGGTGGAGAAGACTCCGAAGTCTCTAAAGGTGGGATGAATGGAGGAAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCGGCACTGTGTTTCGTTGGAATAGGAGGATTTGTGTACAAGAAGCGTCAGGATAACATTCGTCGATCTCAGTACGGGAATGCTGCTAGGTCTTCGTTTTTAAACATGGACTATGCTGAGGCTTTGCACTTATTAGCTCATTTTGCTTTGAATTGCCATTATTCGTTGTGTTGGACTGATAATTTTCCGGATTGGTTGGCCGGGTGTGTCGGGGCTGACCGTTGA

Protein sequence

MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSPVNSPPLPSPTPLPHAPASSPVESPLHSPPAPPPSDLPHTPSPAPLLPPVSSPSISPAADSDSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFLNMDYAEALHLLAHFALNCHYSLCWTDNFPDWLAGCVGADR
BLAST of CsGy6G011600 vs. NCBI nr
Match: XP_011656995.1 (PREDICTED: proline-rich receptor-like protein kinase PERK9 [Cucumis sativus] >KGN46836.1 hypothetical protein Csa_6G140840 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 5.8e-41
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG 120

Query: 121 GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL
Sbjct: 121 GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 165

BLAST of CsGy6G011600 vs. NCBI nr
Match: XP_008463942.2 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 2.4e-26
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157
           DS NITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG
Sbjct: 98  DSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157

Query: 158 NAARSSFL 166
           +AARSSFL
Sbjct: 158 SAARSSFL 165

BLAST of CsGy6G011600 vs. NCBI nr
Match: XP_022986136.1 (proline-rich receptor-like protein kinase PERK12 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-20
Identity = 57/68 (83.82%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157
           D  N  S  GG +SE SKGGMNGGKKAGIAVGVIAA CFVGIGG VYKKRQDNIRRSQYG
Sbjct: 96  DFRNSISNNGGVESESSKGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYG 155

Query: 158 NAARSSFL 166
           NAARSSFL
Sbjct: 156 NAARSSFL 163

BLAST of CsGy6G011600 vs. NCBI nr
Match: XP_022995398.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 107.1 bits (266), Expect = 7.4e-20
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 0

Query: 100 SNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNA 159
           ++I +GGGGE +E SKGGMNGGKKAGIAVGVIAA CFVGIGG VYKKRQDNIRRSQ+GNA
Sbjct: 104 NSIANGGGGE-TEASKGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQFGNA 163

Query: 160 ARSSFL 166
           ARSSFL
Sbjct: 164 ARSSFL 168

BLAST of CsGy6G011600 vs. NCBI nr
Match: XP_022958106.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 114 SKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           SKGGMNGGKKAGIAVGVIAA CFVG+GG VYKKRQDNIRRSQ+GNAARSSFL
Sbjct: 117 SKGGMNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168

BLAST of CsGy6G011600 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 100 SNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNA 159
           S+IT   G +    S GGM+GGKK G+A G IAA+C VG+ GFVYKKRQ+NIRRS+YG A
Sbjct: 111 SDITGIEGEKLPSGSGGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRSRYGYA 170

Query: 160 AR 162
           AR
Sbjct: 171 AR 172

BLAST of CsGy6G011600 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein)

HSP 1 Score: 44.7 bits (104), Expect = 8.1e-05
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 0

Query: 104 SGGGGEDSEVSKG---GMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAA 163
           S   GE+    +G   GM+G +KAGIA+G I  +  + IG  VYKKR+DN+ R++Y    
Sbjct: 204 SDAAGEELNDERGEDYGMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARYTYFT 263

Query: 164 RSSFL 166
              FL
Sbjct: 264 EGEFL 268

BLAST of CsGy6G011600 vs. TAIR10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0

Query: 131 IAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSF 165
           IAA   VG GG+V KKR++NIRRS+YG A+   F
Sbjct: 106 IAAASMVGFGGYVLKKRRENIRRSRYGYASTEFF 139

BLAST of CsGy6G011600 vs. TrEMBL
Match: tr|A0A0A0KGE9|A0A0A0KGE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140840 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.8e-41
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVKTIHLSCLLFIFVSLFNNVSFSLEQPQQLPPSPSXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSNITSGGGGEDSEVSKGGMNG 120

Query: 121 GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL
Sbjct: 121 GKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 165

BLAST of CsGy6G011600 vs. TrEMBL
Match: tr|A0A1S3CKF5|A0A1S3CKF5_CUCME (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103501947 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157
           DS NITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG
Sbjct: 98  DSGNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157

Query: 158 NAARSSFL 166
           +AARSSFL
Sbjct: 158 SAARSSFL 165

BLAST of CsGy6G011600 vs. TrEMBL
Match: tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA (Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_030090 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.0e-15
Identity = 45/58 (77.59%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 108 GEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           GE  E  + GMNGGKKAGIAVGVIAA C VG+GGFVYKKRQDNIRRSQYG AAR   L
Sbjct: 118 GEPEEAEESGMNGGKKAGIAVGVIAAACLVGLGGFVYKKRQDNIRRSQYGYAARREML 175

BLAST of CsGy6G011600 vs. TrEMBL
Match: tr|A0A2P5DU49|A0A2P5DU49_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.8e-13
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 98  DSSNITSGGGGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYG 157
           D S+  +   GE  E  + GMNGGKKAGIAVGVIAA   VG+GGF+YKKRQDNIRRSQYG
Sbjct: 109 DISHKDTNDRGEPEEEEESGMNGGKKAGIAVGVIAAASLVGLGGFIYKKRQDNIRRSQYG 168

Query: 158 NAARSSFL 166
            AAR   L
Sbjct: 169 YAARREML 176

BLAST of CsGy6G011600 vs. TrEMBL
Match: tr|A0A2P5R992|A0A2P5R992_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19718 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 107 GGEDSEVSKGGMNGGKKAGIAVGVIAALCFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
           G E+     GGM+GGKKAGI  GV+AA C VG GG VYKKRQ+NIRRSQYG AARS FL
Sbjct: 103 GSEEKSRGDGGMSGGKKAGIVFGVVAAACLVGFGGLVYKKRQENIRRSQYGYAARSEFL 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011656995.15.8e-41100.00PREDICTED: proline-rich receptor-like protein kinase PERK9 [Cucumis sativus] >KG... [more]
XP_008463942.22.4e-2697.06PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis ... [more]
XP_022986136.14.3e-2083.82proline-rich receptor-like protein kinase PERK12 [Cucurbita maxima][more]
XP_022995398.17.4e-2084.85lysine-rich arabinogalactan protein 18-like [Cucurbita maxima][more]
XP_022958106.14.5e-1792.31lysine-rich arabinogalactan protein 18-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G45230.11.6e-1362.90hydroxyproline-rich glycoprotein family protein[more]
AT2G28440.18.1e-0541.54proline-rich family protein[more]
AT5G60630.12.4e-0458.82FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KGE9|A0A0A0KGE9_CUCSA3.8e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G140840 PE=4 SV=1[more]
tr|A0A1S3CKF5|A0A1S3CKF5_CUCME1.6e-2697.06pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3... [more]
tr|A0A2P5FTY5|A0A2P5FTY5_9ROSA8.0e-1577.59Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=... [more]
tr|A0A2P5DU49|A0A2P5DU49_PARAD5.8e-1366.18Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_031340 PE... [more]
tr|A0A2P5R992|A0A2P5R992_GOSBA1.3e-1269.49Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19718 PE=4 SV... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G011600.1CsGy6G011600.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..116

The following gene(s) are paralogous to this gene:

None