Carg11025 (gene) Silver-seed gourd

Overview
NameCarg11025
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUncharacterised protein family SERF
LocationCucurbita_argyrosperma_scaffold_027 : 479331 .. 479967 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTACGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACGCTGGCAAGGGCAAATCCAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAGGTTCGTTTATCTTATTTCTTCCAGTTTCATTATTATGTGTTTGTTTGATTGATTGATTGATTTTTCTTCTTCTTATGGTTAGGGATGCGAAGGCTCTACAGGAGAAGGCGGCGAAGAAGGCGGCTCAGGCATCAGGGGGAGATAATTCGTCCGGAGGTAAAAGTAGCAATAAAAAGTAAATCGCCGTGAACTATGTCGATTTTTAACTTTGTTCTTGTTGGAACGCTGAGATCTCGTGGATTTCATAAGACTGTTTGATATGGGAGAAACAACCTCTGTATGTCTAAATGATGTGAATGGATATGTATTATGCTGTCAACGTTAATTGGAGAAGCTCTCTTGATATGTTGTGTTGAGCTGATTATGTTGTTAATGCTTGATTTCCTGGAGATTGGATCTAGATGAAAAGTTTCTCAATTATGATCTGATCTAACACAGATCTTCATGAACAAAAGAAATGAAATCGTATGGTTCTATCATTTGACTTCTTTAGTTACAATTTTCATTAGAATGATAAATCCTTTTGT

mRNA sequence

TCTCTACGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACGCTGGCAAGGGCAAATCCAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAGGGATGCGAAGGCTCTACAGGAGAAGGCGGCGAAGAAGGCGGCTCAGGCATCAGGGGGAGATAATTCGTCCGGAGGTAAAAGTAGCAATAAAAAGTAAATCGCCGTGAACTATGTCGATTTTTAACTTTGTTCTTGTTGGAACGCTGAGATCTCGTGGATTTCATAAGACTGTTTGATATGGGAGAAACAACCTCTGTATGTCTAAATGATGTGAATGGATATGTATTATGCTGTCAACGTTAATTGGAGAAGCTCTCTTGATATGTTGTGTTGAGCTGATTATGTTGTTAATGCTTGATTTCCTGGAGATTGGATCTAGATGAAAAGTTTCTCAATTATGATCTGATCTAACACAGATCTTCATGAACAAAAGAAATGAAATCGTATGGTTCTATCATTTGACTTCTTTAGTTACAATTTTCATTAGAATGATAAATCCTTTTGT

Coding sequence (CDS)

TCTCTACGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACGCTGGCAAGGGCAAATCCAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAGGGATGCGAAGGCTCTACAGGAGAAGGCGGCGAAGAAGGCGGCTCAGGCATCAGGGGGAGATAATTCGTCCGGAGGTAAAAGTAGCAATAAAAAGTAA

Protein sequence

SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
Homology
[Close]
BLAST of Carg11025 vs. TAIR10
Match: AT3G24100.1 (Uncharacterised protein family SERF)

HSP 1 Score: 43.1 bits (100), Expect = 7.9e-05
Identity = 23/41 (56.10%), Postives = 25/41 (60.98%), Query Frame = 0 

Query: 3  RGNQREKDXXXXXXXXXXXXXXXDDGLTHEQRRERDAKALQ 44
          RG+QRE+D               DDGLT EQRRERDAKALQ
Sbjct: 3  RGSQRERDRERALARTGGKGKNKDDGLTPEQRRERDAKALQ 43

The following BLAST results are available for this feature:
BLAST of Carg11025 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11025 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24100.17.9e-0556.10Uncharacterised protein family SERF[more]
BLAST of Carg11025 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg11025 vs. TrEMBL
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007513Uncharacterised_SERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11025-RACarg11025-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 3..35
e-value: 2.0E-7
score: 31.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..68
NoneNo IPR availablePANTHERPTHR13596:SF5SUBFAMILY NOT NAMEDcoord: 3..67
NoneNo IPR availablePANTHERPTHR13596SMALL EDRK-RICH FACTOR 1coord: 3..67

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11025Cla002960Watermelon (97103) v1carwmB1077
Carg11025Csa2G138790Cucumber (Chinese Long) v2carcuB1089
Carg11025MELO3C020447Melon (DHL92) v3.5.1carmeB1046
Carg11025ClCG06G007830Watermelon (Charleston Gray)carwcgB1046
Carg11025CSPI02G09150Wild cucumber (PI 183967)carcpiB1111
Carg11025Cucsa.193940Cucumber (Gy14) v1carcgyB1189
Carg11025CmaCh08G010220Cucurbita maxima (Rimu)carcmaB1495
Carg11025CmoCh08G009920Cucurbita moschata (Rifu)carcmoB1452
Carg11025Lsi09G011410Bottle gourd (USVL1VR-Ls)carlsiB981
Carg11025Cp4.1LG17g03200Cucurbita pepo (Zucchini)carcpeB1503
Carg11025CsGy2G009400Cucumber (Gy14) v2carcgybB1055
Carg11025MELO3C020447.2Melon (DHL92) v3.6.1carmedB1060
Carg11025CsaV3_2G011550Cucumber (Chinese Long) v3carcucB1122
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg11025Carg10145Silver-seed gourdcarcarB267
The following block(s) are covering this gene:
GeneOrganismBlock
Carg11025Silver-seed gourdcarcarB615
Carg11025Silver-seed gourdcarcarB649
Carg11025Cucumber (Gy14) v2carcgybB1059
Carg11025Cucumber (Gy14) v1carcgyB1190
Carg11025Cucurbita maxima (Rimu)carcmaB1485
Carg11025Cucurbita maxima (Rimu)carcmaB1489
Carg11025Cucurbita maxima (Rimu)carcmaB1492
Carg11025Cucurbita maxima (Rimu)carcmaB1494
Carg11025Cucurbita moschata (Rifu)carcmoB1443
Carg11025Cucurbita moschata (Rifu)carcmoB1448
Carg11025Cucurbita moschata (Rifu)carcmoB1450
Carg11025Cucurbita moschata (Rifu)carcmoB1451
Carg11025Cucurbita pepo (Zucchini)carcpeB1501
Carg11025Cucurbita pepo (Zucchini)carcpeB1504
Carg11025Cucurbita pepo (Zucchini)carcpeB1506
Carg11025Cucurbita pepo (Zucchini)carcpeB1507
Carg11025Wild cucumber (PI 183967)carcpiB1115
Carg11025Cucumber (Chinese Long) v2carcuB1093
Carg11025Cucumber (Chinese Long) v3carcucB1126
Carg11025Bottle gourd (USVL1VR-Ls)carlsiB983
Carg11025Melon (DHL92) v3.5.1carmeB1050
Carg11025Melon (DHL92) v3.6.1carmedB1064
Carg11025Watermelon (Charleston Gray)carwcgB1045
Carg11025Watermelon (97103) v1carwmB1075
Carg11025Watermelon (97103) v2carwmbB1131
Carg11025Watermelon (97103) v2carwmbB1133
Carg11025Watermelon (97103) v2carwmbB1137
Carg11025Wax gourdcarwgoB1267