ClCG06G007830 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G007830
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	4F5 protein family protein
Location	CG_Chr06 : 10113470 .. 10113925 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGTGAAAGGTTCTTCCTCTATTTTCTTTCTTCTTTCTTCTTTCTTTTTCCTTTTTTTTTTTTTTGATTTGGTTTTTTTGATTGATATTGGATTTTGTTTAGGGATGCCAAGGCGCTACAAGAGAAGATGGCGAAGAAGGCGGCTCAGGCGGCATCCGGAGGTAATTCATCTGGAGGTAAAAGTAGCGCTAAAAAGTAAAATGGTCCTGGGTTTAGAATCCTGAACTATGTTGATTTTTTTCAGCTTTGTTCTTGTTTGGAACGCTGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGAATTAACCTTTTTATGTTTCAGTAATGTGAATGGATATATGTATTATGCTGTC

mRNA sequence

TCTCTACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGTGAAAGGGATGCCAAGGCGCTACAAGAGAAGATGGCGAAGAAGGCGGCTCAGGCGGCATCCGGAGCTTTGTTCTTGTTTGGAACGCTGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGAATTAACCTTTTTATGTTTCAGTAATGTGAATGGATATATGTATTATGCTGTC

Coding sequence (CDS)

TCTCTACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGTGAAAGGGATGCCAAGGCGCTACAAGAGAAGATGGCGAAGAAGGCGGCTCAGGCGGCATCCGGAGCTTTGTTCTTGTTTGGAACGCTGAGATCTCGTGGTTCTTAG

Protein sequence

SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGALFLFGTLRSRGS

Homology

[Close]

BLAST of ClCG06G007830 vs. TrEMBL
Match: A0A0A0LHU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-20
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SG
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSG 56

[Close]

BLAST of ClCG06G007830 vs. TrEMBL
Match: A9PAB8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-20
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA G
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGG 56

[Close]

BLAST of ClCG06G007830 vs. TrEMBL
Match: V4MXM1_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10002785mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-18
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1


Query: 2   LRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
           L G+QRE+DRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEK AKKAAQAA  A
Sbjct: 60  LEGSQRERDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAGAA 115

[Close]

BLAST of ClCG06G007830 vs. TrEMBL
Match: A0A0D3AAZ5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.2e-18
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RG+QRE+DRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEK AKKAAQAA  A
Sbjct: 42 RGSQRERDRERAQARAGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAGAA 96

[Close]

BLAST of ClCG06G007830 vs. TrEMBL
Match: A0A078FU94_BRANA (BnaA01g23310D protein OS=Brassica napus GN=BnaA01g23310D PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.2e-18
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RG+QRE+DRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEK AKKAAQAA  A
Sbjct: 6  RGSQRERDRERAQARAGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAGAA 60

[Close]

BLAST of ClCG06G007830 vs. TAIR10
Match: AT3G24100.1 (AT3G24100.1 Uncharacterised protein family SERF)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-20
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RG+QRE+DRERA AR GGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA+ A
Sbjct: 3  RGSQRERDRERALARTGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAAAA 57

[Close]

BLAST of ClCG06G007830 vs. TAIR10
Match: AT4G13615.1 (AT4G13615.1 Uncharacterised protein family SERF)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-18
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RG+QRE+DRERA AR GGKGK  DDGLTPEQRRERD KALQEK AKKAAQAA  +
Sbjct: 3  RGSQRERDRERAAARAGGKGKNGDDGLTPEQRRERDGKALQEKAAKKAAQAAGAS 57

[Close]

BLAST of ClCG06G007830 vs. NCBI nr
Match: gi|659114814|ref|XP_008457241.1| (PREDICTED: putative SERF-like protein [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEK AKKAAQAASG
Sbjct: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASG 56

[Close]

BLAST of ClCG06G007830 vs. NCBI nr
Match: gi|449442381|ref|XP_004138960.1| (PREDICTED: small EDRK-rich factor 2 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SG
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSG 56

[Close]

BLAST of ClCG06G007830 vs. NCBI nr
Match: gi|566212140|ref|XP_006373059.1| (hypothetical protein POPTR_0017s08260g [Populus trichocarpa])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA G
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGG 56

[Close]

BLAST of ClCG06G007830 vs. NCBI nr
Match: gi|747055092|ref|XP_011073783.1| (PREDICTED: small EDRK-rich factor 2 [Sesamum indicum])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RGNQRE+DRERAQARN GKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA G+
Sbjct: 3  RGNQRERDRERAQARNSGKGKNKDDGLTPEQRRERDAKALQEKAAKKAAQAAGGS 57

[Close]

BLAST of ClCG06G007830 vs. NCBI nr
Match: gi|1009140045|ref|XP_015887438.1| (PREDICTED: small EDRK-rich factor 2 [Ziziphus jujuba])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-18
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQAR+G  GKTKDDGLTPEQRRERDAKALQEK AKKAAQAASG
Sbjct: 3  RGNQREKDRERAQARSGKGGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASG 56

The following BLAST results are available for this feature:

BLAST of ClCG06G007830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHU5_CUCSA	9.8e-20	94.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1	[more]
A9PAB8_POPTR	9.8e-20	94.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1	[more]
V4MXM1_EUTSA	2.4e-18	87.50	Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10002785mg P...	[more]
A0A0D3AAZ5_BRAOL	3.2e-18	89.09	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078FU94_BRANA	3.2e-18	89.09	BnaA01g23310D protein OS=Brassica napus GN=BnaA01g23310D PE=4 SV=1	[more]

BLAST of ClCG06G007830 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24100.1	1.8e-20	85.45	Uncharacterised protein family SERF	[more]
AT4G13615.1	1.3e-18	80.00	Uncharacterised protein family SERF	[more]

BLAST of ClCG06G007830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114814\|ref\|XP_008457241.1\|	1.3e-20	98.15	PREDICTED: putative SERF-like protein [Cucumis melo]	[more]
gi\|449442381\|ref\|XP_004138960.1\|	1.4e-19	94.44	PREDICTED: small EDRK-rich factor 2 [Cucumis sativus]	[more]
gi\|566212140\|ref\|XP_006373059.1\|	1.4e-19	94.44	hypothetical protein POPTR_0017s08260g [Populus trichocarpa]	[more]
gi\|747055092\|ref\|XP_011073783.1\|	1.2e-18	89.09	PREDICTED: small EDRK-rich factor 2 [Sesamum indicum]	[more]
gi\|1009140045\|ref\|XP_015887438.1\|	2.7e-18	92.59	PREDICTED: small EDRK-rich factor 2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007513	Uncharacterised_SERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G007830.1	ClCG06G007830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 3..35 score: 1.
None	No IPR available	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 3..56 score: 8.0
None	No IPR available	PANTHER	PTHR13596:SF5	SUBFAMILY NOT NAMED	coord: 3..56 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G007830	Carg11025	Silver-seed gourd	carwcgB1046
ClCG06G007830	CsaV3_2G011550	Cucumber (Chinese Long) v3	cucwcgB155

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G007830	Melon (DHL92) v3.6.1	medwcgB378
ClCG06G007830	Melon (DHL92) v3.6.1	medwcgB437
ClCG06G007830	Silver-seed gourd	carwcgB0221
ClCG06G007830	Silver-seed gourd	carwcgB0936
ClCG06G007830	Cucumber (Chinese Long) v3	cucwcgB254
ClCG06G007830	Watermelon (97103) v2	wcgwmbB269
ClCG06G007830	Watermelon (97103) v2	wcgwmbB273
ClCG06G007830	Wax gourd	wcgwgoB503
ClCG06G007830	Wax gourd	wcgwgoB525
ClCG06G007830	Watermelon (Charleston Gray)	wcgwcgB160
ClCG06G007830	Cucumber (Gy14) v1	cgywcgB352
ClCG06G007830	Cucumber (Gy14) v1	cgywcgB452
ClCG06G007830	Cucurbita maxima (Rimu)	cmawcgB235
ClCG06G007830	Cucurbita maxima (Rimu)	cmawcgB326
ClCG06G007830	Cucurbita maxima (Rimu)	cmawcgB328
ClCG06G007830	Cucurbita maxima (Rimu)	cmawcgB565
ClCG06G007830	Cucurbita maxima (Rimu)	cmawcgB804
ClCG06G007830	Cucurbita moschata (Rifu)	cmowcgB221
ClCG06G007830	Cucurbita moschata (Rifu)	cmowcgB321
ClCG06G007830	Cucurbita moschata (Rifu)	cmowcgB325
ClCG06G007830	Cucurbita moschata (Rifu)	cmowcgB746
ClCG06G007830	Cucurbita moschata (Rifu)	cmowcgB799
ClCG06G007830	Wild cucumber (PI 183967)	cpiwcgB150
ClCG06G007830	Wild cucumber (PI 183967)	cpiwcgB255
ClCG06G007830	Cucumber (Chinese Long) v2	cuwcgB147
ClCG06G007830	Melon (DHL92) v3.5.1	mewcgB388
ClCG06G007830	Melon (DHL92) v3.5.1	mewcgB441
ClCG06G007830	Watermelon (97103) v1	wcgwmB331
ClCG06G007830	Watermelon (97103) v1	wcgwmB344
ClCG06G007830	Cucurbita pepo (Zucchini)	cpewcgB143
ClCG06G007830	Cucurbita pepo (Zucchini)	cpewcgB144
ClCG06G007830	Cucurbita pepo (Zucchini)	cpewcgB294
ClCG06G007830	Cucurbita pepo (Zucchini)	cpewcgB561
ClCG06G007830	Cucurbita pepo (Zucchini)	cpewcgB788
ClCG06G007830	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G007830	Bottle gourd (USVL1VR-Ls)	lsiwcgB343
ClCG06G007830	Cucumber (Gy14) v2	cgybwcgB138
ClCG06G007830	Cucumber (Gy14) v2	cgybwcgB230