ClCG06G007830.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG06G007830.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description4F5 protein family protein
LocationCG_Chr06 : 10113470 .. 10113925 (-)
Sequence length280
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGTGAAAGGTTCTTCCTCTATTTTCTTTCTTCTTTCTTCTTTCTTTTTCCTTTTTTTTTTTTTTGATTTGGTTTTTTTGATTGATATTGGATTTTGTTTAGGGATGCCAAGGCGCTACAAGAGAAGATGGCGAAGAAGGCGGCTCAGGCGGCATCCGGAGGTAATTCATCTGGAGGTAAAAGTAGCGCTAAAAAGTAAAATGGTCCTGGGTTTAGAATCCTGAACTATGTTGATTTTTTTCAGCTTTGTTCTTGTTTGGAACGCTGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGAATTAACCTTTTTATGTTTCAGTAATGTGAATGGATATATGTATTATGCTGTC

mRNA sequence

TCTCTACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGTGAAAGGGATGCCAAGGCGCTACAAGAGAAGATGGCGAAGAAGGCGGCTCAGGCGGCATCCGGAGCTTTGTTCTTGTTTGGAACGCTGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGAATTAACCTTTTTATGTTTCAGTAATGTGAATGGATATATGTATTATGCTGTC

Coding sequence (CDS)

TCTCTACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGTGAAAGGGATGCCAAGGCGCTACAAGAGAAGATGGCGAAGAAGGCGGCTCAGGCGGCATCCGGAGCTTTGTTCTTGTTTGGAACGCTGAGATCTCGTGGTTCTTAG

Protein sequence

SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGALFLFGTLRSRGS
Homology
[Close]
BLAST of ClCG06G007830.1 vs. TrEMBL
Match: A0A0A0LHU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-20
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SG
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSG 56

[Close]
BLAST of ClCG06G007830.1 vs. TrEMBL
Match: A9PAB8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-20
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA G
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGG 56

[Close]
BLAST of ClCG06G007830.1 vs. TrEMBL
Match: V4MXM1_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10002785mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-18
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 

Query: 2   LRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
           L G+QRE+DRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEK AKKAAQAA  A
Sbjct: 60  LEGSQRERDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAGAA 115

[Close]
BLAST of ClCG06G007830.1 vs. TrEMBL
Match: A0A0D3AAZ5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.2e-18
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RG+QRE+DRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEK AKKAAQAA  A
Sbjct: 42 RGSQRERDRERAQARAGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAGAA 96

[Close]
BLAST of ClCG06G007830.1 vs. TrEMBL
Match: A0A078FU94_BRANA (BnaA01g23310D protein OS=Brassica napus GN=BnaA01g23310D PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.2e-18
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RG+QRE+DRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEK AKKAAQAA  A
Sbjct: 6  RGSQRERDRERAQARAGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAGAA 60

[Close]
BLAST of ClCG06G007830.1 vs. TAIR10
Match: AT3G24100.1 (AT3G24100.1 Uncharacterised protein family SERF)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-20
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RG+QRE+DRERA AR GGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA+ A
Sbjct: 3  RGSQRERDRERALARTGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAAAA 57

[Close]
BLAST of ClCG06G007830.1 vs. TAIR10
Match: AT4G13615.1 (AT4G13615.1 Uncharacterised protein family SERF)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-18
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RG+QRE+DRERA AR GGKGK  DDGLTPEQRRERD KALQEK AKKAAQAA  +
Sbjct: 3  RGSQRERDRERAAARAGGKGKNGDDGLTPEQRRERDGKALQEKAAKKAAQAAGAS 57

[Close]
BLAST of ClCG06G007830.1 vs. NCBI nr
Match: gi|659114814|ref|XP_008457241.1| (PREDICTED: putative SERF-like protein [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEK AKKAAQAASG
Sbjct: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASG 56

[Close]
BLAST of ClCG06G007830.1 vs. NCBI nr
Match: gi|449442381|ref|XP_004138960.1| (PREDICTED: small EDRK-rich factor 2 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SG
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSG 56

[Close]
BLAST of ClCG06G007830.1 vs. NCBI nr
Match: gi|566212140|ref|XP_006373059.1| (hypothetical protein POPTR_0017s08260g [Populus trichocarpa])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA G
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGG 56

[Close]
BLAST of ClCG06G007830.1 vs. NCBI nr
Match: gi|747055092|ref|XP_011073783.1| (PREDICTED: small EDRK-rich factor 2 [Sesamum indicum])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASGA 58
          RGNQRE+DRERAQARN GKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA G+
Sbjct: 3  RGNQRERDRERAQARNSGKGKNKDDGLTPEQRRERDAKALQEKAAKKAAQAAGGS 57

[Close]
BLAST of ClCG06G007830.1 vs. NCBI nr
Match: gi|1009140045|ref|XP_015887438.1| (PREDICTED: small EDRK-rich factor 2 [Ziziphus jujuba])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-18
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 1 

Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKMAKKAAQAASG 57
          RGNQREKDRERAQAR+G  GKTKDDGLTPEQRRERDAKALQEK AKKAAQAASG
Sbjct: 3  RGNQREKDRERAQARSGKGGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASG 56

The following BLAST results are available for this feature:
BLAST of ClCG06G007830.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHU5_CUCSA9.8e-2094.44Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1[more]
A9PAB8_POPTR9.8e-2094.44Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1[more]
V4MXM1_EUTSA2.4e-1887.50Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10002785mg P... [more]
A0A0D3AAZ5_BRAOL3.2e-1889.09Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078FU94_BRANA3.2e-1889.09BnaA01g23310D protein OS=Brassica napus GN=BnaA01g23310D PE=4 SV=1[more]
BLAST of ClCG06G007830.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24100.11.8e-2085.45 Uncharacterised protein family SERF[more]
AT4G13615.11.3e-1880.00 Uncharacterised protein family SERF[more]
BLAST of ClCG06G007830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114814|ref|XP_008457241.1|1.3e-2098.15PREDICTED: putative SERF-like protein [Cucumis melo][more]
gi|449442381|ref|XP_004138960.1|1.4e-1994.44PREDICTED: small EDRK-rich factor 2 [Cucumis sativus][more]
gi|566212140|ref|XP_006373059.1|1.4e-1994.44hypothetical protein POPTR_0017s08260g [Populus trichocarpa][more]
gi|747055092|ref|XP_011073783.1|1.2e-1889.09PREDICTED: small EDRK-rich factor 2 [Sesamum indicum][more]
gi|1009140045|ref|XP_015887438.1|2.7e-1892.59PREDICTED: small EDRK-rich factor 2 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007513Uncharacterised_SERF
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG06G007830ClCG06G007830gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG06G007830.1ClCG06G007830.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG06G007830.1.three_prime_UTR1ClCG06G007830.1.three_prime_UTR1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG06G007830.1.cds3ClCG06G007830.1.cds3CDS
ClCG06G007830.1.cds2ClCG06G007830.1.cds2CDS
ClCG06G007830.1.cds1ClCG06G007830.1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 3..35
score: 1.
NoneNo IPR availablePANTHERPTHR13596SMALL EDRK-RICH FACTOR 1coord: 3..56
score: 8.0
NoneNo IPR availablePANTHERPTHR13596:SF5SUBFAMILY NOT NAMEDcoord: 3..56
score: 8.0