MELO3C020447 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020447
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Small EDRK-rich factor 1
Location	chr5 : 8483260 .. 8484177 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTACCTTTGGTTGACTCTCTGTTTTTAGAGATTGGAATTCTTCGTTTCTTCGGCTAAGTCTCCACCCCAATCCTCCAATTCTACATCTTTCTTCACCACCCACTTCATTAATCTCCCTCCAATGACTCATATCCTTCTCAATCTTCAATTCTTTTTCATCTTTTTTATGTCGATTTTCCATGAACTTGTGCTTTCTTTTCTTTTCTTTTCTTTTCTTTTAAGGCGTTTTTGATTCATTGATTTTGTAAATTTCTTCTTCTTTCAAGTTTGTTTCCCTTGACTCAGATCTCTACGTGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGGTTTTCTTTTATCTTCTATCCTCTACCTTCGTTAATTTTCCCTTTTGTTTCGATCTGGGTTTCTTTTTATTCGTTTTCGATTTTGGTTTAGAGATGCTAAGGCGCTGCAAGAAAAAGCCGCGAAGAAGGCGGCTCAGGCGGCATCAGGAGGTAATTCATCCGGAGGTAAAGCTAGCACTAAGAAGTAAAATGGTCCTGGGTTTAGAATCATGGATTATGTTGATTTTTCTTAGCTTTGTTCTTGTTGGAACGCCGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGGAGTAACCTTCATATGTTTCAGTAATGTGAATTGATATATGTATTATGCTGTCAACGTTCATTGTTGATTATTGTTTTTCATCATCTTAGTACTCTTGATCTTTACTTCTGTTGAGGTAACTATGCTGTCAATTGCGGATTTTGTTGAGATTGGATCCTAATGAAAAATTCTTGTTCATATGTTATGATAT

mRNA sequence

GATTACCTTTGGTTGACTCTCTGTTTTTAGAGATTGGAATTCTTCGTTTCTTCGGCTAAGTCTCCACCCCAATCCTCCAATTCTACATCTTTCTTCACCACCCACTTCATTAATCTCCCTCCAATGACTCATATCCTTCTCAATCTTCAATTCTTTTTCATCTTTTTTATATCTCTACGTGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTGCAAGAAAAAGCCGCGAAGAAGGCGGCTCAGGCGGCATCAGGAGGTAATTCATCCGGAGGTAAAGCTAGCACTAAGAAGTAAAATGGTCCTGGGTTTAGAATCATGGATTATGTTGATTTTTCTTAGCTTTGTTCTTGTTGGAACGCCGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGGAGTAACCTTCATATGTTTCAGTAATGTGAATTGATATATGTATTATGCTGTCAACGTTCATTGTTGATTATTGTTTTTCATCATCTTAGTACTCTTGATCTTTACTTCTGTTGAGGTAACTATGCTGTCAATTGCGGATTTTGTTGAGATTGGATCCTAATGAAAAATTCTTGTTCATATGTTATGATAT

Coding sequence (CDS)

ATGACTCATATCCTTCTCAATCTTCAATTCTTTTTCATCTTTTTTATATCTCTACGTGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTGCAAGAAAAAGCCGCGAAGAAGGCGGCTCAGGCGGCATCAGGAGGTAATTCATCCGGAGGTAAAGCTAGCACTAAGAAGTAA

Protein sequence

MTHILLNLQFFFIFFISLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGGKASTKK*

Homology

[Close]

BLAST of MELO3C020447 vs. TrEMBL
Match: A0A0A0LHU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-27
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60

Query: 61 GGKASTKK 69
          GGK STKK
Sbjct: 61 GGKPSTKK 68

[Close]

BLAST of MELO3C020447 vs. TrEMBL
Match: A0A0D2QML7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G233500 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-23
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKG-KTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNS 60
          MTRGNQR++DRERAQ+R GGKG KTKDDGLTPEQRRERDAKALQEKAAKKAAQAA+GGN+
Sbjct: 1  MTRGNQRDRDRERAQSRAGGKGSKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAAGGNN 60

Query: 61 SGGKASTKK 69
          +GG + TKK
Sbjct: 61 AGGGSKTKK 69

[Close]

BLAST of MELO3C020447 vs. TrEMBL
Match: A9PAB8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-23
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          M RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA G +S 
Sbjct: 1  MARGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGGESSG 60

Query: 61 GGKASTKK 69
          G K + KK
Sbjct: 61 GDKGNNKK 68

[Close]

BLAST of MELO3C020447 vs. TrEMBL
Match: M5XT50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014532mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-22
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQAR GGKGK KDDGLTPEQRRERDAKALQEK AKKAA AA GGNSS
Sbjct: 1  MTRGNQREKDRERAQAR-GGKGKNKDDGLTPEQRRERDAKALQEKQAKKAAGAAPGGNSS 60

Query: 61 GGKA 65
          GGK+
Sbjct: 61 GGKS 63

[Close]

BLAST of MELO3C020447 vs. TrEMBL
Match: A0A0D2Q0T0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G187200 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-22
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1   MTRGNQREKDRERAQARNGGKGK--TKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGN 60
           MTRGNQREKDRERAQ+R+G KGK  +KDDGLTPEQRRERDAKALQEKAAKKAAQAA+GGN
Sbjct: 53  MTRGNQREKDRERAQSRSGNKGKAGSKDDGLTPEQRRERDAKALQEKAAKKAAQAAAGGN 112

Query: 61  SSGGKASTK 68
           ++GG   +K
Sbjct: 113 TAGGAGGSK 121

[Close]

BLAST of MELO3C020447 vs. TAIR10
Match: AT3G24100.1 (AT3G24100.1 Uncharacterised protein family SERF)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-23
Identity = 51/62 (82.26%), Postives = 53/62 (85.48%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRG+QRE+DRERA AR GGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA+  +S 
Sbjct: 1  MTRGSQRERDRERALARTGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSG 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 62

[Close]

BLAST of MELO3C020447 vs. TAIR10
Match: AT4G13615.1 (AT4G13615.1 Uncharacterised protein family SERF)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-22
Identity = 53/70 (75.71%), Postives = 56/70 (80.00%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQA--ASGGN 60
          MTRG+QRE+DRERA AR GGKGK  DDGLTPEQRRERD KALQEKAAKKAAQA  AS G 
Sbjct: 1  MTRGSQRERDRERAAARAGGKGKNGDDGLTPEQRRERDGKALQEKAAKKAAQAAGASSGG 60

Query: 61 SSGGKASTKK 69
          ++GGK +  K
Sbjct: 61 AAGGKGAAAK 70

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: gi|659114814|ref|XP_008457241.1| (PREDICTED: putative SERF-like protein [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60

Query: 61 GGKASTKK 69
          GGKASTKK
Sbjct: 61 GGKASTKK 68

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: gi|449442381|ref|XP_004138960.1| (PREDICTED: small EDRK-rich factor 2 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-27
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60

Query: 61 GGKASTKK 69
          GGK STKK
Sbjct: 61 GGKPSTKK 68

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: gi|1009140045|ref|XP_015887438.1| (PREDICTED: small EDRK-rich factor 2 [Ziziphus jujuba])

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-24
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQAR+G  GKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGG S+
Sbjct: 1  MTRGNQREKDRERAQARSGKGGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGGSA 60

Query: 61 GGKASTKK 69
          GG+ S KK
Sbjct: 61 GGQNSNKK 68

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: gi|763741006|gb|KJB08505.1| (hypothetical protein B456_001G233500 [Gossypium raimondii])

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKG-KTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNS 60
          MTRGNQR++DRERAQ+R GGKG KTKDDGLTPEQRRERDAKALQEKAAKKAAQAA+GGN+
Sbjct: 1  MTRGNQRDRDRERAQSRAGGKGSKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAAGGNN 60

Query: 61 SGGKASTKK 69
          +GG + TKK
Sbjct: 61 AGGGSKTKK 69

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: gi|566212140|ref|XP_006373059.1| (hypothetical protein POPTR_0017s08260g [Populus trichocarpa])

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-23
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          M RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA G +S 
Sbjct: 1  MARGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGGESSG 60

Query: 61 GGKASTKK 69
          G K + KK
Sbjct: 61 GDKGNNKK 68

The following BLAST results are available for this feature:

BLAST of MELO3C020447 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHU5_CUCSA	2.2e-27	94.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1	[more]
A0A0D2QML7_GOSRA	1.9e-23	84.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G233500 PE=4 SV=1	[more]
A9PAB8_POPTR	3.3e-23	83.82	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1	[more]
M5XT50_PRUPE	2.8e-22	90.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014532mg PE=4 SV=1	[more]
A0A0D2Q0T0_GOSRA	3.6e-22	81.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G187200 PE=4 SV=1	[more]

BLAST of MELO3C020447 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24100.1	2.9e-23	82.26	Uncharacterised protein family SERF	[more]
AT4G13615.1	1.1e-22	75.71	Uncharacterised protein family SERF	[more]

BLAST of MELO3C020447 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114814\|ref\|XP_008457241.1\|	2.6e-29	100.00	PREDICTED: putative SERF-like protein [Cucumis melo]	[more]
gi\|449442381\|ref\|XP_004138960.1\|	3.1e-27	94.12	PREDICTED: small EDRK-rich factor 2 [Cucumis sativus]	[more]
gi\|1009140045\|ref\|XP_015887438.1\|	3.2e-24	88.24	PREDICTED: small EDRK-rich factor 2 [Ziziphus jujuba]	[more]
gi\|763741006\|gb\|KJB08505.1\|	2.7e-23	84.06	hypothetical protein B456_001G233500 [Gossypium raimondii]	[more]
gi\|566212140\|ref\|XP_006373059.1\|	4.7e-23	83.82	hypothetical protein POPTR_0017s08260g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007513	Uncharacterised_SERF
IPR007513	Uncharacterised_SERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54189	melon EST collection version 4.0	transcribed_cluster
MU58781	melon EST collection version 4.0	transcribed_cluster
MU61746	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020447T2	MELO3C020447T2	mRNA
MELO3C020447T1	MELO3C020447T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54189	MU54189	transcribed_cluster
MU58781	MU58781	transcribed_cluster
MU61746	MU61746	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 19..51 score: 1.
None	No IPR available	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 19..78 score: 2.5
None	No IPR available	PANTHER	PTHR13596:SF5	SUBFAMILY NOT NAMED	coord: 19..78 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020447	Csa2G138790	Cucumber (Chinese Long) v2	cumeB134
MELO3C020447	Carg11025	Silver-seed gourd	carmeB1046
MELO3C020447	CsaV3_2G011550	Cucumber (Chinese Long) v3	cucmeB136

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020447	Cucurbita maxima (Rimu)	cmameB234
MELO3C020447	Cucurbita maxima (Rimu)	cmameB336
MELO3C020447	Cucurbita maxima (Rimu)	cmameB338
MELO3C020447	Cucurbita maxima (Rimu)	cmameB845
MELO3C020447	Cucurbita moschata (Rifu)	cmomeB221
MELO3C020447	Cucurbita moschata (Rifu)	cmomeB329
MELO3C020447	Cucurbita moschata (Rifu)	cmomeB331
MELO3C020447	Cucurbita moschata (Rifu)	cmomeB752
MELO3C020447	Cucurbita moschata (Rifu)	cmomeB828
MELO3C020447	Wild cucumber (PI 183967)	cpimeB134
MELO3C020447	Wild cucumber (PI 183967)	cpimeB226
MELO3C020447	Watermelon (Charleston Gray)	mewcgB385
MELO3C020447	Watermelon (Charleston Gray)	mewcgB388
MELO3C020447	Watermelon (97103) v1	mewmB413
MELO3C020447	Watermelon (97103) v1	mewmB430
MELO3C020447	Cucurbita pepo (Zucchini)	cpemeB136
MELO3C020447	Cucurbita pepo (Zucchini)	cpemeB137
MELO3C020447	Cucurbita pepo (Zucchini)	cpemeB310
MELO3C020447	Cucurbita pepo (Zucchini)	cpemeB578
MELO3C020447	Cucurbita pepo (Zucchini)	cpemeB804
MELO3C020447	Bottle gourd (USVL1VR-Ls)	lsimeB025
MELO3C020447	Bottle gourd (USVL1VR-Ls)	lsimeB360
MELO3C020447	Cucumber (Gy14) v2	cgybmeB115
MELO3C020447	Cucumber (Gy14) v2	cgybmeB195
MELO3C020447	Silver-seed gourd	carmeB0233
MELO3C020447	Silver-seed gourd	carmeB0939
MELO3C020447	Cucumber (Chinese Long) v3	cucmeB230
MELO3C020447	Cucumber (Chinese Long) v3	cucmeB232
MELO3C020447	Watermelon (97103) v2	mewmbB384
MELO3C020447	Watermelon (97103) v2	mewmbB388
MELO3C020447	Watermelon (97103) v2	mewmbB405
MELO3C020447	Wax gourd	mewgoB450
MELO3C020447	Wax gourd	mewgoB480
MELO3C020447	Melon (DHL92) v3.5.1	memeB147
MELO3C020447	Cucumber (Gy14) v1	cgymeB351
MELO3C020447	Cucumber (Gy14) v1	cgymeB434