CmaCh08G010220 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G010220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUncharacterised protein family SERF
LocationCma_Chr08 : 6392720 .. 6393393 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTTTCTTGTTTTTTGAGTTCGGATCTCTACGAATTGAGGAGTTTTAGGTGTTTCAATTAATTGATTTTGGAGATTTTTCTTCTTTCAAGTTTGTTTGCCTTGACTCAGATCTCTACGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACTCTGGCAAGGGCAAATCCAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAGGTTCGTTTATCTTATTGCTTCCAGTTTCATTATTATGTGTTTATTTGATTGATTGATTGATTTTTCTTCTTCTTATGGTTAGGGATGCGAAGGCTCTACAGGAGAAGGCGGCGAAGAAGGCGGCTCAGGCATCAGGGGGAGATAATTCGTCCGGAGGTAAAAGTAGCAATAAAAAGTAAATCGCCGTGAACTATGTCGATTTTTAACTTTTTTCTTGTTGGAACGCTGAGATCTCGTGGATTTCTTAAGACTGTTTGATATTGGAGAAACAATCTCTGTATGTCTAAATGATGTGAATGGATATGTATTATGCTGTCAACGTTAATTGGAGAAAGCTCTCTTGATATGTTGTGTTGAGCTGATTATGTTGTTAATGATTGATTTCCTGGAGATTGGATCTAGACGAGAAGTTTCTCAATTATGTTCTGATCAATCACAGATCTTCATGA

mRNA sequence

ATGCTGTTTTCTTGTTTTTTGAGTTCGGATCTCTACGAATTGAGGAGTTTTAGATCTCTACGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACTCTGGCAAGGGCAAATCCAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAGGGATGCGAAGGCTCTACAGGAGAAGGCGGCGAAGAAGGCGGCTCAGGCATCAGGGGGAGATAATTCGTCCGGAGACGAGAAGTTTCTCAATTATGTTCTGATCAATCACAGATCTTCATGA

Coding sequence (CDS)

ATGCTGTTTTCTTGTTTTTTGAGTTCGGATCTCTACGAATTGAGGAGTTTTAGATCTCTACGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACTCTGGCAAGGGCAAATCCAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAGGGATGCGAAGGCTCTACAGGAGAAGGCGGCGAAGAAGGCGGCTCAGGCATCAGGGGGAGATAATTCGTCCGGAGACGAGAAGTTTCTCAATTATGTTCTGATCAATCACAGATCTTCATGA

Protein sequence

MLFSCFLSSDLYELRSFRSLRGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGDEKFLNYVLINHRSS
Homology
[Close]
BLAST of CmaCh08G010220 vs. TrEMBL
Match: A9PAB8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-17
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGD 80
          RGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEK AKKAAQA+GG++S GD
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGGESSGGD 62

Query: 81 E 82
          +
Sbjct: 63 K 63

[Close]
BLAST of CmaCh08G010220 vs. TrEMBL
Match: A0A0A0LHU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-16
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSG 80
          RGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEK AKKAAQA  G NSSG
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSG 61

[Close]
BLAST of CmaCh08G010220 vs. TrEMBL
Match: I1N254_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G164200 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-15
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGD 80
          RGNQR++DRERAQAR  GKGK KDDGLT EQRRERDAKALQEKAAKKAAQ +GG+N+ G 
Sbjct: 3  RGNQRDRDRERAQARTGGKGKQKDDGLTPEQRRERDAKALQEKAAKKAAQDAGGNNAGGT 62

Query: 81 EK 83
          +K
Sbjct: 63 KK 64

[Close]
BLAST of CmaCh08G010220 vs. TrEMBL
Match: A0A0B2PT99_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026733 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-14
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGD 80
          RG+QR++DRERAQAR   KGK KDDGLT EQRRERDAKALQEKAAKKAAQ +GG+N++G 
Sbjct: 3  RGSQRDRDRERAQARTGAKGKQKDDGLTPEQRRERDAKALQEKAAKKAAQGAGGNNAAGS 62

Query: 81 EK 83
          +K
Sbjct: 63 KK 64

[Close]
BLAST of CmaCh08G010220 vs. TrEMBL
Match: C6SZT0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-14
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGD 80
          RG+QR++DRERAQAR   KGK KDDGLT EQRRERDAKALQEKAAKKAAQ +GG+N++G 
Sbjct: 3  RGSQRDRDRERAQARTGAKGKQKDDGLTPEQRRERDAKALQEKAAKKAAQGAGGNNAAGS 62

Query: 81 EK 83
          +K
Sbjct: 63 KK 64

[Close]
BLAST of CmaCh08G010220 vs. TAIR10
Match: AT3G24100.1 (AT3G24100.1 Uncharacterised protein family SERF)

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-15
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQA-----SGGD 80
          RG+QRE+DRERA AR  GKGK+KDDGLT EQRRERDAKALQEK AKKAAQA     SGG 
Sbjct: 3  RGSQRERDRERALARTGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSGGG 62

Query: 81 NSSGDEK 83
             G+ K
Sbjct: 63 GGKGNNK 69

[Close]
BLAST of CmaCh08G010220 vs. TAIR10
Match: AT4G13615.1 (AT4G13615.1 Uncharacterised protein family SERF)

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-14
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDN 77
          RG+QRE+DRERA AR  GKGK+ DDGLT EQRRERD KALQEKAAKKAAQA+G  +
Sbjct: 3  RGSQRERDRERAAARAGGKGKNGDDGLTPEQRRERDGKALQEKAAKKAAQAAGASS 58

[Close]
BLAST of CmaCh08G010220 vs. NCBI nr
Match: gi|566212140|ref|XP_006373059.1| (hypothetical protein POPTR_0017s08260g [Populus trichocarpa])

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-17
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGD 80
          RGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEK AKKAAQA+GG++S GD
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGGESSGGD 62

Query: 81 E 82
          +
Sbjct: 63 K 63

[Close]
BLAST of CmaCh08G010220 vs. NCBI nr
Match: gi|659114814|ref|XP_008457241.1| (PREDICTED: putative SERF-like protein [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSG 80
          RGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEKAAKKAAQA+ G NSSG
Sbjct: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSG 61

[Close]
BLAST of CmaCh08G010220 vs. NCBI nr
Match: gi|449442381|ref|XP_004138960.1| (PREDICTED: small EDRK-rich factor 2 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-16
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSG 80
          RGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEK AKKAAQA  G NSSG
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSG 61

[Close]
BLAST of CmaCh08G010220 vs. NCBI nr
Match: gi|747055092|ref|XP_011073783.1| (PREDICTED: small EDRK-rich factor 2 [Sesamum indicum])

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-16
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSG 80
          RGNQRE+DRERAQARNSGKGK+KDDGLT EQRRERDAKALQEKAAKKAAQA+GG    G
Sbjct: 3  RGNQRERDRERAQARNSGKGKNKDDGLTPEQRRERDAKALQEKAAKKAAQAAGGSEPGG 61

[Close]
BLAST of CmaCh08G010220 vs. NCBI nr
Match: gi|571546456|ref|XP_006602502.1| (PREDICTED: small EDRK-rich factor 2 [Glycine max])

HSP 1 Score: 88.6 bits (218), Expect = 6.4e-15
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 1 

Query: 21 RGNQREKDRERAQARNSGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGD 80
          RGNQR++DRERAQAR  GKGK KDDGLT EQRRERDAKALQEKAAKKAAQ +GG+N+ G 
Sbjct: 3  RGNQRDRDRERAQARTGGKGKQKDDGLTPEQRRERDAKALQEKAAKKAAQDAGGNNAGGT 62

Query: 81 EK 83
          +K
Sbjct: 63 KK 64

The following BLAST results are available for this feature:
BLAST of CmaCh08G010220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G010220 vs. TrEMBL
Match NameE-valueIdentityDescription
A9PAB8_POPTR6.2e-1785.25Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1[more]
A0A0A0LHU5_CUCSA4.0e-1688.14Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1[more]
I1N254_SOYBN4.5e-1579.03Uncharacterized protein OS=Glycine max GN=GLYMA_18G164200 PE=4 SV=1[more]
A0A0B2PT99_GLYSO2.9e-1475.81Uncharacterized protein OS=Glycine soja GN=glysoja_026733 PE=4 SV=1[more]
C6SZT0_SOYBN2.9e-1475.81Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of CmaCh08G010220 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24100.13.0e-1571.64 Uncharacterised protein family SERF[more]
AT4G13615.13.4e-1476.79 Uncharacterised protein family SERF[more]
BLAST of CmaCh08G010220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|566212140|ref|XP_006373059.1|8.9e-1785.25hypothetical protein POPTR_0017s08260g [Populus trichocarpa][more]
gi|659114814|ref|XP_008457241.1|1.5e-1689.83PREDICTED: putative SERF-like protein [Cucumis melo][more]
gi|449442381|ref|XP_004138960.1|5.8e-1688.14PREDICTED: small EDRK-rich factor 2 [Cucumis sativus][more]
gi|747055092|ref|XP_011073783.1|9.9e-1686.44PREDICTED: small EDRK-rich factor 2 [Sesamum indicum][more]
gi|571546456|ref|XP_006602502.1|6.4e-1579.03PREDICTED: small EDRK-rich factor 2 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007513Uncharacterised_SERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G010220.1CmaCh08G010220.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 21..53
score: 1.
NoneNo IPR availablePANTHERPTHR13596SMALL EDRK-RICH FACTOR 1coord: 21..79
score: 5.1
NoneNo IPR availablePANTHERPTHR13596:SF5SUBFAMILY NOT NAMEDcoord: 21..79
score: 5.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G010220CmoCh08G009920Cucurbita moschata (Rifu)cmacmoB912
CmaCh08G010220Cp4.1LG17g03200Cucurbita pepo (Zucchini)cmacpeB916
CmaCh08G010220MELO3C020447.2Melon (DHL92) v3.6.1cmamedB946
CmaCh08G010220CsaV3_2G011550Cucumber (Chinese Long) v3cmacucB1047
CmaCh08G010220CsGy2G009400Cucumber (Gy14) v2cgybcmaB272
CmaCh08G010220Carg10145Silver-seed gourdcarcmaB0321
CmaCh08G010220Carg11025Silver-seed gourdcarcmaB1495
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G010220Watermelon (97103) v2cmawmbB921
CmaCh08G010220Watermelon (97103) v2cmawmbB927
CmaCh08G010220Wax gourdcmawgoB1090
CmaCh08G010220Cucurbita maxima (Rimu)cmacmaB373
CmaCh08G010220Cucurbita maxima (Rimu)cmacmaB511
CmaCh08G010220Cucumber (Gy14) v1cgycmaB0566
CmaCh08G010220Cucurbita moschata (Rifu)cmacmoB887
CmaCh08G010220Cucurbita moschata (Rifu)cmacmoB909
CmaCh08G010220Cucurbita moschata (Rifu)cmacmoB910
CmaCh08G010220Wild cucumber (PI 183967)cmacpiB902
CmaCh08G010220Wild cucumber (PI 183967)cmacpiB911
CmaCh08G010220Cucumber (Chinese Long) v2cmacuB884
CmaCh08G010220Melon (DHL92) v3.5.1cmameB845
CmaCh08G010220Watermelon (Charleston Gray)cmawcgB804
CmaCh08G010220Watermelon (Charleston Gray)cmawcgB811
CmaCh08G010220Watermelon (97103) v1cmawmB878
CmaCh08G010220Cucurbita pepo (Zucchini)cmacpeB895
CmaCh08G010220Cucurbita pepo (Zucchini)cmacpeB930
CmaCh08G010220Bottle gourd (USVL1VR-Ls)cmalsiB811
CmaCh08G010220Silver-seed gourdcarcmaB1089
CmaCh08G010220Silver-seed gourdcarcmaB1327
CmaCh08G010220Cucumber (Chinese Long) v3cmacucB1058