CmoCh08G009920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G009920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	4F5 family protein
Location	Cmo_Chr08 : 6447261 .. 6448326 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGGGGAAGGCTTCCCAGTGGACATCTCTACTCTAAGCTAGGTCCTCTGAATGTAATATTGCATCTCATCTAGTCATCATGATTCCCAACAACATGGCATGCATTTCATGATGTCAGTCCAAGTTTTAAAATGTTAGTGACATCTGGTGGTCACTCATACATGCTTATCGAGCATCAACTCATGAATCAACTTTATCGTCCGAGTATCTCGGACATCCATATATTTAGGTAAGGCACCTAATATAGTTGTCTTATAATAGCCTACACCATGAAAATTTTAAATAAAACAAAACCAAAAAAAACGGTTTTCATCCTTTTGCATGGGTCTTAAAATGTTAGATAGTAAAAAGACTTTTACGGTCAAAATTTTAACTAATTAACCAAAAGTAATTATTTTTATATGCACTAATTTCAAAGGAAATTTAAGTCTAACAAAAAAATAAATTCAACAAATGATCATTAAATAAATTTCACTGAAACTCATAAATTTGAATTTCCTTCGAATTTAGTGACGTTTAAAATAAAACTGTAATATTTATTTAAATTTAAATTCTATGTAAAAAAAAAAAAAATACAAGATTAGCCGAAATATTCTCTGAACCAAATATAAATAGGCGTGGTATAGTCTCGGGTTCCTCTGTTCTTCTATGCCCGCGGTTGACTCTCTATTGTAGAGATAGTTTCTCTGGCTGCCAATCTCTATCAGTTTCATAAATTTTATCAGCCACTTCCAACTTCAACAAATGACTCATATCCTTCTCAATCTTTAATTCCTCGTTTTCTGATGCTGTTTTCTTGTTTTTTGAGTTCGGATCTCTACGAATTGAGGATTTTTTGGTGTTTCGATTAATTGATTTTGGAGATTTTTCTTCGTTCAAGTTTGTTTGCCTTGACTCAGATCTCTACGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACGCTGGCAAGGGCAAATCTAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAGGTTCGTTTATCTTATTTCTTCCAGTTTCATTATTATGTGTTTGTTTGTTTGA

mRNA sequence

ATGGGACGGGGAAGGCTTCCCAGTGGACATCTCTACTCTAAGCTAGGTCCTCTGAATTTTCTCTGGCTGCCAATCTCTATCAGTTTCATAAATTTTATCAGCCACTTCCAACTTCAACAAATGACTCGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACGCTGGCAAGGGCAAATCTAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAGGTTCGTTTATCTTATTTCTTCCAGTTTCATTATTATGTGTTTGTTTGTTTGA

Coding sequence (CDS)

ATGGGACGGGGAAGGCTTCCCAGTGGACATCTCTACTCTAAGCTAGGTCCTCTGAATTTTCTCTGGCTGCCAATCTCTATCAGTTTCATAAATTTTATCAGCCACTTCCAACTTCAACAAATGACTCGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACGCTGGCAAGGGCAAATCTAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAGGTTCGTTTATCTTATTTCTTCCAGTTTCATTATTATGTGTTTGTTTGTTTGA

Homology

[Close]

BLAST of CmoCh08G009920 vs. TrEMBL
Match: A0A0A0LHU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          MTRGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRER 37

[Close]

BLAST of CmoCh08G009920 vs. TrEMBL
Match: A9PAB8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-08
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          M RGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Sbjct: 1  MARGNQREKDRERAQARNGGKGKNKDDGLTPEQRRER 37

[Close]

BLAST of CmoCh08G009920 vs. TrEMBL
Match: A0A0K9Q3L4_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_10G01300 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARN-AGKGKSKDDGLTHEQRRER 78
          MTRGNQREKDRERAQARN  GKG +KDDGLTHEQRRER
Sbjct: 1  MTRGNQREKDRERAQARNQKGKGTTKDDGLTHEQRRER 38

[Close]

BLAST of CmoCh08G009920 vs. TrEMBL
Match: A0A0K9PVX5_ZOSMR (Small EDRK-rich factor 2 OS=Zostera marina GN=ZOSMA_153G00130 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          MTRGNQREKDRERAQARN  KGK KDDGLTHEQRRER
Sbjct: 1  MTRGNQREKDRERAQARNQ-KGKGKDDGLTHEQRRER 36

[Close]

BLAST of CmoCh08G009920 vs. TrEMBL
Match: I1N254_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G164200 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-07
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          MTRGNQR++DRERAQAR  GKGK KDDGLT EQRRER
Sbjct: 1  MTRGNQRDRDRERAQARTGGKGKQKDDGLTPEQRRER 37

[Close]

BLAST of CmoCh08G009920 vs. TAIR10
Match: AT3G24100.1 (AT3G24100.1 Uncharacterised protein family SERF)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          MTRG+QRE+DRERA AR  GKGK+KDDGLT EQRRER
Sbjct: 1  MTRGSQRERDRERALARTGGKGKNKDDGLTPEQRRER 37

[Close]

BLAST of CmoCh08G009920 vs. TAIR10
Match: AT4G13615.1 (AT4G13615.1 Uncharacterised protein family SERF)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          MTRG+QRE+DRERA AR  GKGK+ DDGLT EQRRER
Sbjct: 1  MTRGSQRERDRERAAARAGGKGKNGDDGLTPEQRRER 37

[Close]

BLAST of CmoCh08G009920 vs. NCBI nr
Match: gi|659114814|ref|XP_008457241.1| (PREDICTED: putative SERF-like protein [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          MTRGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRER 37

[Close]

BLAST of CmoCh08G009920 vs. NCBI nr
Match: gi|449442381|ref|XP_004138960.1| (PREDICTED: small EDRK-rich factor 2 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          MTRGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRER 37

[Close]

BLAST of CmoCh08G009920 vs. NCBI nr
Match: gi|747055092|ref|XP_011073783.1| (PREDICTED: small EDRK-rich factor 2 [Sesamum indicum])

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-08
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          MTRGNQRE+DRERAQARN+GKGK+KDDGLT EQRRER
Sbjct: 1  MTRGNQRERDRERAQARNSGKGKNKDDGLTPEQRRER 37

[Close]

BLAST of CmoCh08G009920 vs. NCBI nr
Match: gi|566212140|ref|XP_006373059.1| (hypothetical protein POPTR_0017s08260g [Populus trichocarpa])

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          M RGNQREKDRERAQARN GKGK+KDDGLT EQRRER
Sbjct: 1  MARGNQREKDRERAQARNGGKGKNKDDGLTPEQRRER 37

[Close]

BLAST of CmoCh08G009920 vs. NCBI nr
Match: gi|901821249|gb|KMZ73121.1| (Small EDRK-rich factor 2 [Zostera marina])

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 41 MTRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRER 78
          MTRGNQREKDRERAQARN  KGK KDDGLTHEQRRER
Sbjct: 1  MTRGNQREKDRERAQARNQ-KGKGKDDGLTHEQRRER 36

The following BLAST results are available for this feature:

BLAST of CmoCh08G009920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh08G009920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHU5_CUCSA	1.1e-08	91.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1	[more]
A9PAB8_POPTR	4.0e-08	89.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1	[more]
A0A0K9Q3L4_ZOSMR	1.2e-07	89.47	Uncharacterized protein OS=Zostera marina GN=ZOSMA_10G01300 PE=4 SV=1	[more]
A0A0K9PVX5_ZOSMR	1.2e-07	91.89	Small EDRK-rich factor 2 OS=Zostera marina GN=ZOSMA_153G00130 PE=4 SV=1	[more]
I1N254_SOYBN	3.4e-07	83.78	Uncharacterized protein OS=Glycine max GN=GLYMA_18G164200 PE=4 SV=1	[more]

BLAST of CmoCh08G009920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24100.1	1.4e-09	81.08	Uncharacterised protein family SERF	[more]
AT4G13615.1	1.2e-08	78.38	Uncharacterised protein family SERF	[more]

BLAST of CmoCh08G009920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114814\|ref\|XP_008457241.1\|	1.5e-08	91.89	PREDICTED: putative SERF-like protein [Cucumis melo]	[more]
gi\|449442381\|ref\|XP_004138960.1\|	1.5e-08	91.89	PREDICTED: small EDRK-rich factor 2 [Cucumis sativus]	[more]
gi\|747055092\|ref\|XP_011073783.1\|	2.6e-08	89.19	PREDICTED: small EDRK-rich factor 2 [Sesamum indicum]	[more]
gi\|566212140\|ref\|XP_006373059.1\|	5.7e-08	89.19	hypothetical protein POPTR_0017s08260g [Populus trichocarpa]	[more]
gi\|901821249\|gb\|KMZ73121.1\|	1.7e-07	91.89	Small EDRK-rich factor 2 [Zostera marina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007513	Uncharacterised_SERF
IPR026939	At2g23090-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G009920.1	CmoCh08G009920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 41..75 score: 1.
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 40..79 score: 3.
None	No IPR available	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 42..77 score: 2.4
None	No IPR available	PANTHER	PTHR13596:SF5	SUBFAMILY NOT NAMED	coord: 42..77 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G009920	CmaCh08G010220	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G009920	Cp4.1LG17g03200	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G009920	MELO3C020447.2	Melon (DHL92) v3.6.1	cmomedB935
CmoCh08G009920	CsaV3_2G011550	Cucumber (Chinese Long) v3	cmocucB1031
CmoCh08G009920	CsGy2G009400	Cucumber (Gy14) v2	cgybcmoB257
CmoCh08G009920	Carg10145	Silver-seed gourd	carcmoB0326
CmoCh08G009920	Carg11025	Silver-seed gourd	carcmoB1452

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G009920	CmoCh17G001000	Cucurbita moschata (Rifu)	cmocmoB310

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G009920	Melon (DHL92) v3.6.1	cmomedB940
CmoCh08G009920	Silver-seed gourd	carcmoB1061
CmoCh08G009920	Silver-seed gourd	carcmoB1289
CmoCh08G009920	Cucumber (Chinese Long) v3	cmocucB1032
CmoCh08G009920	Cucumber (Chinese Long) v3	cmocucB1040
CmoCh08G009920	Watermelon (97103) v2	cmowmbB896
CmoCh08G009920	Watermelon (97103) v2	cmowmbB886
CmoCh08G009920	Watermelon (97103) v2	cmowmbB903
CmoCh08G009920	Wax gourd	cmowgoB1084
CmoCh08G009920	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh08G009920	Cucurbita moschata (Rifu)	cmocmoB484
CmoCh08G009920	Cucurbita moschata (Rifu)	cmocmoB446
CmoCh08G009920	Cucumber (Gy14) v1	cgycmoB0568
CmoCh08G009920	Cucumber (Gy14) v1	cgycmoB0721
CmoCh08G009920	Cucurbita maxima (Rimu)	cmacmoB279
CmoCh08G009920	Cucurbita maxima (Rimu)	cmacmoB365
CmoCh08G009920	Cucurbita maxima (Rimu)	cmacmoB837
CmoCh08G009920	Wild cucumber (PI 183967)	cmocpiB882
CmoCh08G009920	Wild cucumber (PI 183967)	cmocpiB883
CmoCh08G009920	Cucumber (Chinese Long) v2	cmocuB871
CmoCh08G009920	Cucumber (Chinese Long) v2	cmocuB872
CmoCh08G009920	Melon (DHL92) v3.5.1	cmomeB832
CmoCh08G009920	Melon (DHL92) v3.5.1	cmomeB828
CmoCh08G009920	Watermelon (Charleston Gray)	cmowcgB792
CmoCh08G009920	Watermelon (Charleston Gray)	cmowcgB799
CmoCh08G009920	Watermelon (97103) v1	cmowmB856
CmoCh08G009920	Watermelon (97103) v1	cmowmB867
CmoCh08G009920	Cucurbita pepo (Zucchini)	cmocpeB833
CmoCh08G009920	Cucurbita pepo (Zucchini)	cmocpeB865
CmoCh08G009920	Bottle gourd (USVL1VR-Ls)	cmolsiB797
CmoCh08G009920	Bottle gourd (USVL1VR-Ls)	cmolsiB823
CmoCh08G009920	Cucumber (Gy14) v2	cgybcmoB431