CsGy2G009400 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G009400
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	small EDRK-rich factor 2-like
Location	Chr2 : 8713663 .. 8714104 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTACGCGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGAAAAAACAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGGTTTTTCTTTTATCTTCTATCCTCTCTCTTCATTCTTTTTCCCTTTTGTTTCGATCTGGGTTTTTTTTTTTTATTATTGGTTTTCCATTTTGGTTTAGAGATGCTAAGGCGCTACAAGAAAAAACCGCGAAGAAGGCGGCTCAGGCGGGATCGGGAGGTAATTCATCCGGAGGTAAACCGAGCACTAAGAAGTAAAATGGTCCTGGGTTTAGAATCATGAATTATGTTGATTTTTCCTAGCTTTGTTCTTGTCGGAACGCTGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGGAATAACCTTCATATGTTTCAGTAATGTGAATTGA

mRNA sequence

TCTCTACGCGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGAAAAAACAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTACAAGAAAAAACCGCGAAGAAGGCGGCTCAGGCGGGATCGGGAGGTAATTCATCCGGAGGAATAACCTTCATATGTTTCAGTAATGTGAATTGA

Coding sequence (CDS)

TCTCTACGCGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGAAAAAACAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTACAAGAAAAAACCGCGAAGAAGGCGGCTCAGGCGGGATCGGGAGGTAATTCATCCGGAGGAATAACCTTCATATGTTTCAGTAATGTGAATTGA

Protein sequence

SLRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGGITFICFSNVN

Homology

[Close]

BLAST of CsGy2G009400 vs. NCBI nr
Match: XP_024983637.1 (small EDRK-rich factor 2-like [Cynara cardunculus var. scolymus])

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 47/59 (79.66%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 3  RGNQREKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSG 62
          RGNQREKDRE     NGGKGK KDDGLTPEQRRERDAKALQEKTAKKAAQA   G++ G
Sbjct: 3  RGNQREKDRERANARNGGKGKTKDDGLTPEQRRERDAKALQEKTAKKAAQAAGSGDAGG 61

[Close]

BLAST of CsGy2G009400 vs. NCBI nr
Match: XP_004138960.1 (PREDICTED: small EDRK-rich factor 2 [Cucumis sativus] >KGN61475.1 hypothetical protein Csa_2G138790 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 54/60 (90.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 3  RGNQREKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGG 62
          RGNQREKDREXXXXX      NKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGG
Sbjct: 3  RGNQREKDREXXXXXXXXXXXNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGG 62

[Close]

BLAST of CsGy2G009400 vs. NCBI nr
Match: PSS23971.1 (Carotenoid isomerooxygenase [Actinidia chinensis var. chinensis])

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 48/60 (80.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3  RGNQREKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGG 62
          RGNQREKDRE     NGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SG   +GG
Sbjct: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQA-SGAVEAGG 61

[Close]

BLAST of CsGy2G009400 vs. NCBI nr
Match: XP_015574059.1 (putative SERF-like protein [Ricinus communis])

HSP 1 Score: 79.7 bits (195), Expect = 4.4e-12
Identity = 49/61 (80.33%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 3  RGNQREKDREXXXXXNGGKG-KNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSG 62
          RGNQRE+DRE      GGKG K KDDGLTPEQRRERDAKALQEKTAKKAAQA +GG SSG
Sbjct: 3  RGNQRERDRERAQARTGGKGSKGKDDGLTPEQRRERDAKALQEKTAKKAAQA-AGGESSG 62

[Close]

BLAST of CsGy2G009400 vs. NCBI nr
Match: KVI00337.1 (hypothetical protein Ccrd_021415 [Cynara cardunculus var. scolymus])

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 7  REKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSG 62
          REKDRE     NGGKGK KDDGLTPEQRRERDAKALQEKTAKKAAQA   G++ G
Sbjct: 23 REKDRERANARNGGKGKTKDDGLTPEQRRERDAKALQEKTAKKAAQAAGSGDAGG 77

[Close]

BLAST of CsGy2G009400 vs. TAIR10
Match: AT3G24100.1 (Uncharacterised protein family SERF)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-10
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 3  RGNQREKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQ 44
          RG+QRE+DRE      GGKGKNKDDGLTPEQRRERDAKALQ
Sbjct: 3  RGSQRERDRERALARTGGKGKNKDDGLTPEQRRERDAKALQ 43

[Close]

BLAST of CsGy2G009400 vs. TrEMBL
Match: tr|A0A0A0LHU5|A0A0A0LHU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G138790 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.1e-14
Identity = 54/60 (90.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 3  RGNQREKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGG 62
          RGNQREKDREXXXXX      NKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGG
Sbjct: 3  RGNQREKDREXXXXXXXXXXXNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGG 62

[Close]

BLAST of CsGy2G009400 vs. TrEMBL
Match: tr|A0A2R6R8U7|A0A2R6R8U7_ACTCH (Carotenoid isomerooxygenase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc08830 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 48/60 (80.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3  RGNQREKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGG 62
          RGNQREKDRE     NGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SG   +GG
Sbjct: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQA-SGAVEAGG 61

[Close]

BLAST of CsGy2G009400 vs. TrEMBL
Match: tr|A0A103Y0M7|A0A103Y0M7_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021415 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.5e-12
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 7  REKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSG 62
          REKDRE     NGGKGK KDDGLTPEQRRERDAKALQEKTAKKAAQA   G++ G
Sbjct: 23 REKDRERANARNGGKGKTKDDGLTPEQRRERDAKALQEKTAKKAAQAAGSGDAGG 77

[Close]

BLAST of CsGy2G009400 vs. TrEMBL
Match: tr|A0A2J6JK76|A0A2J6JK76_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X60280 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 3  RGNQREKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNS 60
          RGNQREKDRE      G KGKNKDDGLTPEQRRERD KALQEK AKKA +A   G++
Sbjct: 3  RGNQREKDRERANARGGAKGKNKDDGLTPEQRRERDGKALQEKAAKKAEKAAGSGDA 59

[Close]

BLAST of CsGy2G009400 vs. TrEMBL
Match: tr|A0A1J7HDZ9|A0A1J7HDZ9_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_12781 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 3  RGNQREKDREXXXXXNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSG 62
          RGNQREKDRE      G K K K+DGLTPEQRRERDAKALQEKTAKKAAQA  G N+ G
Sbjct: 7  RGNQREKDRE-RAQARGAKSKQKEDGLTPEQRRERDAKALQEKTAKKAAQAAGGSNAGG 64

The following BLAST results are available for this feature:

BLAST of CsGy2G009400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024983637.1	1.1e-13	79.66	small EDRK-rich factor 2-like [Cynara cardunculus var. scolymus]	[more]
XP_004138960.1	1.4e-13	90.00	PREDICTED: small EDRK-rich factor 2 [Cucumis sativus] >KGN61475.1 hypothetical p...	[more]
PSS23971.1	2.0e-12	80.00	Carotenoid isomerooxygenase [Actinidia chinensis var. chinensis]	[more]
XP_015574059.1	4.4e-12	80.33	putative SERF-like protein [Ricinus communis]	[more]
KVI00337.1	1.3e-11	78.18	hypothetical protein Ccrd_021415 [Cynara cardunculus var. scolymus]	[more]

BLAST of CsGy2G009400 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24100.1	1.3e-10	80.49	Uncharacterised protein family SERF	[more]

BLAST of CsGy2G009400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G009400 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHU5\|A0A0A0LHU5_CUCSA	9.1e-14	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G138790 PE=4 SV=1	[more]
tr\|A0A2R6R8U7\|A0A2R6R8U7_ACTCH	1.3e-12	80.00	Carotenoid isomerooxygenase OS=Actinidia chinensis var. chinensis OX=1590841 GN=...	[more]
tr\|A0A103Y0M7\|A0A103Y0M7_CYNCS	8.5e-12	78.18	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021...	[more]
tr\|A0A2J6JK76\|A0A2J6JK76_LACSA	1.2e-10	71.93	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X60280 PE=4 SV=1	[more]
tr\|A0A1J7HDZ9\|A0A1J7HDZ9_LUPAN	1.2e-10	74.58	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_12781 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007513	Uncharacterised_SERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G009400.1	CsGy2G009400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 3..35 e-value: 7.3E-9 score: 36.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 3..62
None	No IPR available	PANTHER	PTHR13596:SF5	SUBFAMILY NOT NAMED	coord: 3..62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G009400	CmaCh08G010220	Cucurbita maxima (Rimu)	cgybcmaB272
CsGy2G009400	CmoCh08G009920	Cucurbita moschata (Rifu)	cgybcmoB257
CsGy2G009400	Cp4.1LG17g03200	Cucurbita pepo (Zucchini)	cgybcpeB201
CsGy2G009400	MELO3C020447.2	Melon (DHL92) v3.6.1	cgybmedB114
CsGy2G009400	CsaV3_2G011550	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G009400	Carg10145	Silver-seed gourd	carcgybB0242
CsGy2G009400	Carg11025	Silver-seed gourd	carcgybB1055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G009400	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G009400	Wild cucumber (PI 183967)	cgybcpiB073
CsGy2G009400	Cucumber (Chinese Long) v3	cgybcucB079
CsGy2G009400	Watermelon (97103) v2	cgybwmbB133
CsGy2G009400	Watermelon (97103) v2	cgybwmbB135
CsGy2G009400	Wax gourd	cgybwgoB121
CsGy2G009400	Cucumber (Gy14) v2	cgybcgybB054
CsGy2G009400	Cucurbita maxima (Rimu)	cgybcmaB187
CsGy2G009400	Cucurbita maxima (Rimu)	cgybcmaB195
CsGy2G009400	Cucurbita maxima (Rimu)	cgybcmaB197
CsGy2G009400	Cucurbita moschata (Rifu)	cgybcmoB180
CsGy2G009400	Cucurbita moschata (Rifu)	cgybcmoB188
CsGy2G009400	Cucurbita moschata (Rifu)	cgybcmoB189
CsGy2G009400	Cucurbita pepo (Zucchini)	cgybcpeB178
CsGy2G009400	Cucurbita pepo (Zucchini)	cgybcpeB180
CsGy2G009400	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G009400	Bottle gourd (USVL1VR-Ls)	cgyblsiB083
CsGy2G009400	Bottle gourd (USVL1VR-Ls)	cgyblsiB114
CsGy2G009400	Melon (DHL92) v3.5.1	cgybmeB115
CsGy2G009400	Melon (DHL92) v3.5.1	cgybmeB127
CsGy2G009400	Melon (DHL92) v3.6.1	cgybmedB126
CsGy2G009400	Watermelon (Charleston Gray)	cgybwcgB135
CsGy2G009400	Watermelon (Charleston Gray)	cgybwcgB138
CsGy2G009400	Watermelon (97103) v1	cgybwmB125
CsGy2G009400	Watermelon (97103) v1	cgybwmB159