CSPI02G09150 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G09150
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description4F5 protein family protein
LocationChr2 : 8851424 .. 8852435 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGGATAAAATAGAATAGGAATACAAGTGGGAGCACTCACTATATAATGAATCTCCGATTCCCCTGTTCTTTCGATTACCTTCGGTTGACTCTCTGTTTTTAGAGATTGGAATTCTTCGTTTCTTCGCCTAAGTCTCTTCCCCAATCCTCCAATTCCACCACCTTCTTCACCACCCACTTCAATAATCTCCCTCAAATGACTCATATCCTTCTCAATCTTCAATTTTCATCTTTTTTTTCTTTCTTTCGATTTTCCATCAATTTATGCTTTCTTTTCTTTTCTTTTAAGGTGTTTTTGATTCATTGATTCTGTAAATTTCTTCTTCTTTCAAGTTTGTTTCCCTTGACTCAGATCTCTACGCGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGAAAAAACAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGGTTTTTCTTTTATCTTCTATCCTCTCTCTTCATTCTTTTTCCCTTTTGTTTCGATCTGGGTTTTTTTTTTTTTTATTATTGGTTTTCCATTTTGGTTTAGAGATGCTAAGGCGCTACAAGAAAAAACCGCGAAGAAGGCGGCTCAGGCGGGATCGGGAGGTAATTCATCCGGAGGTAAACCGAGCACTAAGAAGTAAAATGGTCCTGGGTTTAGAATCATGAATTATGTTGATTTTTCCTAGCTTTGTTCTTGTCGGAACGCTGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGGAATAACCTTCATATGTTTCAGTAATGTGAATTGATATATGTATTATGCTGTCAACGTTCATTGTTGATTATTGTTTGTCATCATCTTTGTACTCTTGATCTCTTCTTCTGTCGAGGTAACTATGCTGTTAATTGCGGATTTTGTTGAGATTTTATCCTACTGTAAAATTATTGTTCATCTGTTATGATATCTCACTGGTTCCTATGCCATTATTAATTTTGGG

mRNA sequence

ATGACTCGCGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGAAAAAACAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTACAAGAAAAAACCGCGAAGAAGGCGGCTCAGGCGGGATCGGGAGGTAATTCATCCGGAGGTAAACCGAGCACTAAGAAGTAA

Coding sequence (CDS)

ATGACTCGCGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGAAAAAACAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTACAAGAAAAAACCGCGAAGAAGGCGGCTCAGGCGGGATCGGGAGGTAATTCATCCGGAGGTAAACCGAGCACTAAGAAGTAA
Homology
[Close]
BLAST of CSPI02G09150 vs. TrEMBL
Match: A0A0A0LHU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-25
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60
          MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60

Query: 61 GGKPSTKK 69
          GGKPSTKK
Sbjct: 61 GGKPSTKK 68

[Close]
BLAST of CSPI02G09150 vs. TrEMBL
Match: A9PAB8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.3e-19
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60
          M RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQA  G +S 
Sbjct: 1  MARGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGGESSG 60

Query: 61 GGKPSTKK 69
          G K + KK
Sbjct: 61 GDKGNNKK 68

[Close]
BLAST of CSPI02G09150 vs. TrEMBL
Match: M5XT50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014532mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.2e-18
Identity = 58/63 (92.06%), Postives = 58/63 (92.06%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60
          MTRGNQREKDRERAQAR GGKGKNKDDGLTPEQRRERDAKALQEK AKKAA A  GGNSS
Sbjct: 1  MTRGNQREKDRERAQAR-GGKGKNKDDGLTPEQRRERDAKALQEKQAKKAAGAAPGGNSS 60

Query: 61 GGK 64
          GGK
Sbjct: 61 GGK 62

[Close]
BLAST of CSPI02G09150 vs. TrEMBL
Match: A0A0D2QML7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G233500 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-16
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKG-KNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNS 60
          MTRGNQR++DRERAQ+R GGKG K KDDGLTPEQRRERDAKALQEK AKKAAQA +GGN+
Sbjct: 1  MTRGNQRDRDRERAQSRAGGKGSKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAAGGNN 60

Query: 61 SGGKPSTKK 69
          +GG   TKK
Sbjct: 61 AGGGSKTKK 69

[Close]
BLAST of CSPI02G09150 vs. TrEMBL
Match: A0A0D2Q0T0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G187200 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.9e-16
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1 

Query: 1   MTRGNQREKDRERAQARNGGKGK--NKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGN 60
           MTRGNQREKDRERAQ+R+G KGK  +KDDGLTPEQRRERDAKALQEK AKKAAQA +GGN
Sbjct: 53  MTRGNQREKDRERAQSRSGNKGKAGSKDDGLTPEQRRERDAKALQEKAAKKAAQAAAGGN 112

Query: 61  SSGGKPSTK 68
           ++GG   +K
Sbjct: 113 TAGGAGGSK 121

[Close]
BLAST of CSPI02G09150 vs. TAIR10
Match: AT3G24100.1 (AT3G24100.1 Uncharacterised protein family SERF)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60
          MTRG+QRE+DRERA AR GGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQA +  +S 
Sbjct: 1  MTRGSQRERDRERALARTGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSG 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 62

[Close]
BLAST of CSPI02G09150 vs. TAIR10
Match: AT4G13615.1 (AT4G13615.1 Uncharacterised protein family SERF)

HSP 1 Score: 84.3 bits (207), Expect = 3.1e-17
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQA--GSGGN 60
          MTRG+QRE+DRERA AR GGKGKN DDGLTPEQRRERD KALQEK AKKAAQA   S G 
Sbjct: 1  MTRGSQRERDRERAAARAGGKGKNGDDGLTPEQRRERDGKALQEKAAKKAAQAAGASSGG 60

Query: 61 SSGGKPSTKK 69
          ++GGK +  K
Sbjct: 61 AAGGKGAAAK 70

[Close]
BLAST of CSPI02G09150 vs. NCBI nr
Match: gi|449442381|ref|XP_004138960.1| (PREDICTED: small EDRK-rich factor 2 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-25
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60
          MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60

Query: 61 GGKPSTKK 69
          GGKPSTKK
Sbjct: 61 GGKPSTKK 68

[Close]
BLAST of CSPI02G09150 vs. NCBI nr
Match: gi|659114814|ref|XP_008457241.1| (PREDICTED: putative SERF-like protein [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60
          MTRGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60

Query: 61 GGKPSTKK 69
          GGK STKK
Sbjct: 61 GGKASTKK 68

[Close]
BLAST of CSPI02G09150 vs. NCBI nr
Match: gi|566212140|ref|XP_006373059.1| (hypothetical protein POPTR_0017s08260g [Populus trichocarpa])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60
          M RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQA  G +S 
Sbjct: 1  MARGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAGGESSG 60

Query: 61 GGKPSTKK 69
          G K + KK
Sbjct: 61 GDKGNNKK 68

[Close]
BLAST of CSPI02G09150 vs. NCBI nr
Match: gi|1009140045|ref|XP_015887438.1| (PREDICTED: small EDRK-rich factor 2 [Ziziphus jujuba])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60
          MTRGNQREKDRERAQAR+G  GK KDDGLTPEQRRERDAKALQEK AKKAAQA SGG S+
Sbjct: 1  MTRGNQREKDRERAQARSGKGGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGGSA 60

Query: 61 GGKPSTKK 69
          GG+ S KK
Sbjct: 61 GGQNSNKK 68

[Close]
BLAST of CSPI02G09150 vs. NCBI nr
Match: gi|596194187|ref|XP_007223554.1| (hypothetical protein PRUPE_ppa014532mg [Prunus persica])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 58/63 (92.06%), Postives = 58/63 (92.06%), Query Frame = 1 

Query: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60
          MTRGNQREKDRERAQAR GGKGKNKDDGLTPEQRRERDAKALQEK AKKAA A  GGNSS
Sbjct: 1  MTRGNQREKDRERAQAR-GGKGKNKDDGLTPEQRRERDAKALQEKQAKKAAGAAPGGNSS 60

Query: 61 GGK 64
          GGK
Sbjct: 61 GGK 62

The following BLAST results are available for this feature:
BLAST of CSPI02G09150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G09150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHU5_CUCSA2.7e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1[more]
A9PAB8_POPTR8.3e-1985.29Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08260g PE=2 SV=1[more]
M5XT50_PRUPE9.2e-1892.06Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014532mg PE=4 SV=1[more]
A0A0D2QML7_GOSRA1.0e-1679.71Uncharacterized protein OS=Gossypium raimondii GN=B456_001G233500 PE=4 SV=1[more]
A0A0D2Q0T0_GOSRA3.9e-1678.26Uncharacterized protein OS=Gossypium raimondii GN=B456_001G187200 PE=4 SV=1[more]
BLAST of CSPI02G09150 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24100.12.0e-1983.87 Uncharacterised protein family SERF[more]
AT4G13615.13.1e-1774.29 Uncharacterised protein family SERF[more]
BLAST of CSPI02G09150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442381|ref|XP_004138960.1|3.8e-25100.00PREDICTED: small EDRK-rich factor 2 [Cucumis sativus][more]
gi|659114814|ref|XP_008457241.1|3.0e-2294.12PREDICTED: putative SERF-like protein [Cucumis melo][more]
gi|566212140|ref|XP_006373059.1|1.2e-1885.29hypothetical protein POPTR_0017s08260g [Populus trichocarpa][more]
gi|1009140045|ref|XP_015887438.1|1.0e-1783.82PREDICTED: small EDRK-rich factor 2 [Ziziphus jujuba][more]
gi|596194187|ref|XP_007223554.1|1.3e-1792.06hypothetical protein PRUPE_ppa014532mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007513Uncharacterised_SERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G09150.1CSPI02G09150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 1..35
score: 2.7
NoneNo IPR availablePANTHERPTHR13596SMALL EDRK-RICH FACTOR 1coord: 2..62
score: 2.1
NoneNo IPR availablePANTHERPTHR13596:SF5SUBFAMILY NOT NAMEDcoord: 2..62
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G09150Csa2G138790Cucumber (Chinese Long) v2cpicuB065
CSPI02G09150CsaV3_2G011550Cucumber (Chinese Long) v3cpicucB080
CSPI02G09150Cucsa.193940Cucumber (Gy14) v1cgycpiB305
CSPI02G09150CmoCh17G001000Cucurbita moschata (Rifu)cmocpiB348
CSPI02G09150Cp4.1LG12g00890Cucurbita pepo (Zucchini)cpecpiB128
CSPI02G09150Carg11025Silver-seed gourdcarcpiB1111
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G09150Cucumber (Chinese Long) v3cpicucB093
CSPI02G09150Cucumber (Chinese Long) v3cpicucB100
CSPI02G09150Watermelon (97103) v2cpiwmbB142
CSPI02G09150Watermelon (97103) v2cpiwmbB144
CSPI02G09150Wax gourdcpiwgoB126
CSPI02G09150Wild cucumber (PI 183967)cpicpiB063
CSPI02G09150Wild cucumber (PI 183967)cpicpiB071
CSPI02G09150Cucumber (Gy14) v1cgycpiB377
CSPI02G09150Cucurbita maxima (Rimu)cmacpiB239
CSPI02G09150Cucurbita maxima (Rimu)cmacpiB356
CSPI02G09150Cucurbita maxima (Rimu)cmacpiB358
CSPI02G09150Cucurbita maxima (Rimu)cmacpiB902
CSPI02G09150Cucurbita moschata (Rifu)cmocpiB227
CSPI02G09150Cucurbita moschata (Rifu)cmocpiB351
CSPI02G09150Cucurbita moschata (Rifu)cmocpiB882
CSPI02G09150Cucumber (Chinese Long) v2cpicuB072
CSPI02G09150Melon (DHL92) v3.5.1cpimeB134
CSPI02G09150Melon (DHL92) v3.5.1cpimeB145
CSPI02G09150Melon (DHL92) v3.5.1cpimeB147
CSPI02G09150Watermelon (Charleston Gray)cpiwcgB149
CSPI02G09150Watermelon (Charleston Gray)cpiwcgB150
CSPI02G09150Watermelon (97103) v1cpiwmB128
CSPI02G09150Watermelon (97103) v1cpiwmB134
CSPI02G09150Watermelon (97103) v1cpiwmB170
CSPI02G09150Cucurbita pepo (Zucchini)cpecpiB132
CSPI02G09150Cucurbita pepo (Zucchini)cpecpiB304
CSPI02G09150Bottle gourd (USVL1VR-Ls)cpilsiB088
CSPI02G09150Bottle gourd (USVL1VR-Ls)cpilsiB124
CSPI02G09150Bottle gourd (USVL1VR-Ls)cpilsiB128
CSPI02G09150Melon (DHL92) v3.6.1cpimedB127
CSPI02G09150Melon (DHL92) v3.6.1cpimedB139
CSPI02G09150Melon (DHL92) v3.6.1cpimedB141
CSPI02G09150Cucumber (Gy14) v2cgybcpiB056
CSPI02G09150Cucumber (Gy14) v2cgybcpiB109
CSPI02G09150Silver-seed gourdcarcpiB0258