Carg10598 (gene) Silver-seed gourd

Overview
NameCarg10598
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_031 : 156070 .. 156474 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATTGCACAATCGGAAACCCAGTCGATTACAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGTGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCCAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAAGTACTTGATGAGCGAAGGTTACGTTGTTTGA

mRNA sequence

ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATTGCACAATCGGAAACCCAGTCGATTACAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGTGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCCAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAAGTACTTGATGAGCGAAGGTTACGTTGTTTGA

Coding sequence (CDS)

ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATTGCACAATCGGAAACCCAGTCGATTACAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGTGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCCAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAAGTACTTGATGAGCGAAGGTTACGTTGTTTGA

Protein sequence

MAVLGAQAAAINPINFPFLLFHRQQTKYNCTIGNPVDYKTMSSYGRKSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGKLGRDEIDKFIKYLMSEGYVV
Homology
[Close]
BLAST of Carg10598 vs. NCBI nr
Match: KGN55187.1 (hypothetical protein Csa_4G639750 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 52/88 (59.09%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 47  KSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCX 106
           KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC 
Sbjct: 10  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCH 69

Query: 107 XXXXXXXXXXXXXXXXXXXXXMSEGYVV 135
                                MS+GYVV
Sbjct: 70  ADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

[Close]
BLAST of Carg10598 vs. TrEMBL
Match: tr|A0A0A0L3J7|A0A0A0L3J7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 52/88 (59.09%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 47  KSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCX 106
           KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC 
Sbjct: 10  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCH 69

Query: 107 XXXXXXXXXXXXXXXXXXXXXMSEGYVV 135
                                MS+GYVV
Sbjct: 70  ADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

The following BLAST results are available for this feature:
BLAST of Carg10598 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55187.12.9e-1759.09hypothetical protein Csa_4G639750 [Cucumis sativus][more]
BLAST of Carg10598 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg10598 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg10598 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3J7|A0A0A0L3J7_CUCSA1.9e-1759.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10598-RACarg10598-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 63..91
e-value: 0.036
score: 23.2
coord: 99..127
e-value: 35.0
score: 5.3
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 59..89
e-value: 2.3E-5
score: 24.0
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 59..94
score: 11.891
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 95..130
score: 8.627
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 23..131
e-value: 1.6E-10
score: 42.8
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 108..120
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 53..126

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10598Cla020680Watermelon (97103) v1carwmB0769
Carg10598Csa4G639750Cucumber (Chinese Long) v2carcuB0789
Carg10598MELO3C016747Melon (DHL92) v3.5.1carmeB0767
Carg10598ClCG05G019820Watermelon (Charleston Gray)carwcgB0748
Carg10598CSPI04G24020Wild cucumber (PI 183967)carcpiB0807
Carg10598Cucsa.123720Cucumber (Gy14) v1carcgyB0872
Carg10598CmaCh01G018460Cucurbita maxima (Rimu)carcmaB1069
Carg10598CmaCh09G002210Cucurbita maxima (Rimu)carcmaB1065
Carg10598CmoCh01G019040Cucurbita moschata (Rifu)carcmoB1044
Carg10598CmoCh09G002150Cucurbita moschata (Rifu)carcmoB1040
Carg10598Lsi04G015690Bottle gourd (USVL1VR-Ls)carlsiB708
Carg10598Cp4.1LG02g07000Cucurbita pepo (Zucchini)carcpeB1082
Carg10598Cp4.1LG06g01590Cucurbita pepo (Zucchini)carcpeB1083
Carg10598CsGy4G022320Cucumber (Gy14) v2carcgybB0767
Carg10598MELO3C016747.2Melon (DHL92) v3.6.1carmedB0781
Carg10598CsaV3_4G034270Cucumber (Chinese Long) v3carcucB0810
Carg10598Cla97C05G101440Watermelon (97103) v2carwmbB0807
Carg10598Bhi09G002737Wax gourdcarwgoB0905
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10598Carg08774Silver-seed gourdcarcarB124
Carg10598Carg27324Silver-seed gourdcarcarB607
The following block(s) are covering this gene:
GeneOrganismBlock
Carg10598Silver-seed gourdcarcarB224
Carg10598Bottle gourd (USVL1VR-Ls)carlsiB706
Carg10598Silver-seed gourdcarcarB427
Carg10598Silver-seed gourdcarcarB606
Carg10598Cucumber (Gy14) v2carcgybB0766
Carg10598Cucumber (Gy14) v2carcgybB0768
Carg10598Cucumber (Gy14) v1carcgyB0871
Carg10598Cucumber (Gy14) v1carcgyB0873
Carg10598Cucumber (Gy14) v1carcgyB0874
Carg10598Cucurbita maxima (Rimu)carcmaB1067
Carg10598Cucurbita maxima (Rimu)carcmaB1071
Carg10598Cucurbita maxima (Rimu)carcmaB1073
Carg10598Cucurbita moschata (Rifu)carcmoB1042
Carg10598Cucurbita moschata (Rifu)carcmoB1047
Carg10598Cucurbita pepo (Zucchini)carcpeB1078
Carg10598Cucurbita pepo (Zucchini)carcpeB1079
Carg10598Cucurbita pepo (Zucchini)carcpeB1084
Carg10598Wild cucumber (PI 183967)carcpiB0806
Carg10598Wild cucumber (PI 183967)carcpiB0810
Carg10598Cucumber (Chinese Long) v2carcuB0788
Carg10598Cucumber (Chinese Long) v3carcucB0809
Carg10598Bottle gourd (USVL1VR-Ls)carlsiB710
Carg10598Melon (DHL92) v3.5.1carmeB0765
Carg10598Melon (DHL92) v3.5.1carmeB0769
Carg10598Melon (DHL92) v3.6.1carmedB0779
Carg10598Watermelon (Charleston Gray)carwcgB0745
Carg10598Watermelon (Charleston Gray)carwcgB0746
Carg10598Watermelon (Charleston Gray)carwcgB0752
Carg10598Watermelon (97103) v1carwmB0766
Carg10598Watermelon (97103) v1carwmB0773
Carg10598Watermelon (97103) v2carwmbB0803
Carg10598Watermelon (97103) v2carwmbB0805
Carg10598Watermelon (97103) v2carwmbB0812
Carg10598Wax gourdcarwgoB0902