CmoCh01G019040 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G019040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCmo_Chr01 : 13694175 .. 13694579 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATTGCACAATCGGAAACCCAGTCGATTACAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGTGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCCAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAAGTACTTGATGAGCGAAGGTTACGTTGTTTGA

mRNA sequence

ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATTGCACAATCGGAAACCCAGTCGATTACAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGTGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCCAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAAGTACTTGATGAGCGAAGGTTACGTTGTTTGA

Coding sequence (CDS)

ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATTGCACAATCGGAAACCCAGTCGATTACAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGTGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCCAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAAGTACTTGATGAGCGAAGGTTACGTTGTTTGA
Homology
[Close]
BLAST of CmoCh01G019040 vs. TrEMBL
Match: A0A0A0L3J7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639750 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-31
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 1 

Query: 47  KSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQ 106
           KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC 
Sbjct: 10  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCH 69

Query: 107 SDRNRDGKLGRDEIDKFIKYLMSEGYVV 135
           +DRNRDGKLG +EID+F+KY+MS+GYVV
Sbjct: 70  ADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

[Close]
BLAST of CmoCh01G019040 vs. TrEMBL
Match: A0A061ECW3_THECC (Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_017146 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.8e-08
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 44  YGRKSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKA 103
           +G K  +    S   ++  +L  +F + D N DG L   E++ A   L + FP + AF A
Sbjct: 37  FGHKGTSNTKLSPPFFTEAQLTSVFRRFDGNRDGRLSRQELRSAFNSLGSRFPTYRAFAA 96

Query: 104 LCQSDRNRDGKLGRDEIDKFIKYLMSEGYVV 135
           L Q+D+N DG +  DE+D  I Y +S GY V
Sbjct: 97  LHQADQNGDGYISEDEMDDLIHYALSCGYHV 127

[Close]
BLAST of CmoCh01G019040 vs. TrEMBL
Match: A0A061EED0_THECC (Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_017140 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.5e-08
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 63  ELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGKLGRDEIDK 122
           EL  +F + D + DG L   ++K A   + + FP + A  ALCQ+D+NRDG +  DE+D 
Sbjct: 46  ELISVFRRFDGDRDGRLSWQDLKNAFHSIGSRFPSYRALTALCQADKNRDGYISEDEMDD 105

Query: 123 FIKYLMSEGY 133
            I+Y  S GY
Sbjct: 106 LIQYAFSCGY 115

[Close]
BLAST of CmoCh01G019040 vs. TrEMBL
Match: W9S022_9ROSA (Putative calcium-binding protein CML10 OS=Morus notabilis GN=L484_000100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 31/99 (31.31%), Postives = 53/99 (53.54%), Query Frame = 1 

Query: 36  VDYKTMSSYGRKSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEF 95
           + YK++ ++  K           Y  ++L+ +  + DT+ DG L   E+K+A K+L A  
Sbjct: 10  ISYKSVQNHSPKPAV--------YDKEKLKSVIRRYDTDGDGNLSRKELKKAFKELGATA 69

Query: 96  PVHLAFKALCQSDRNRDGKLGRDEIDKFIKYLMSEGYVV 135
           P   A +ALC +D+NRDG +  +E+   + Y    GYV+
Sbjct: 70  PGWRAIRALCHADKNRDGFISEEELANLVHYAAQRGYVL 100

[Close]
BLAST of CmoCh01G019040 vs. TrEMBL
Match: A0A061FBR4_THECC (Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_033849 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-07
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1 

Query: 63  ELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGKLGRDEIDK 122
           ++R IFN+ D N+DG L   E+K+A   L +  P   A+ AL  +D N DG +  DE +K
Sbjct: 46  QVRGIFNRFDANKDGRLSKQELKDAFASLGSRMPGFRAWLALQHADANGDGYISEDEFEK 105

Query: 123 FIKYLMSEGYV 134
            +KY +  GY+
Sbjct: 106 LVKYTLKRGYI 116

[Close]
BLAST of CmoCh01G019040 vs. NCBI nr
Match: gi|700200029|gb|KGN55187.1| (hypothetical protein Csa_4G639750 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 5.3e-31
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 1 

Query: 47  KSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQ 106
           KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC 
Sbjct: 10  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCH 69

Query: 107 SDRNRDGKLGRDEIDKFIKYLMSEGYVV 135
           +DRNRDGKLG +EID+F+KY+MS+GYVV
Sbjct: 70  ADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

[Close]
BLAST of CmoCh01G019040 vs. NCBI nr
Match: gi|590647162|ref|XP_007031825.1| (Calcium-binding EF-hand family protein, putative [Theobroma cacao])

HSP 1 Score: 65.5 bits (158), Expect = 8.3e-08
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 44  YGRKSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKA 103
           +G K  +    S   ++  +L  +F + D N DG L   E++ A   L + FP + AF A
Sbjct: 37  FGHKGTSNTKLSPPFFTEAQLTSVFRRFDGNRDGRLSRQELRSAFNSLGSRFPTYRAFAA 96

Query: 104 LCQSDRNRDGKLGRDEIDKFIKYLMSEGYVV 135
           L Q+D+N DG +  DE+D  I Y +S GY V
Sbjct: 97  LHQADQNGDGYISEDEMDDLIHYALSCGYHV 127

[Close]
BLAST of CmoCh01G019040 vs. NCBI nr
Match: gi|590647148|ref|XP_007031821.1| (Calcium-binding EF-hand family protein, putative [Theobroma cacao])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 63  ELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGKLGRDEIDK 122
           EL  +F + D + DG L   ++K A   + + FP + A  ALCQ+D+NRDG +  DE+D 
Sbjct: 46  ELISVFRRFDGDRDGRLSWQDLKNAFHSIGSRFPSYRALTALCQADKNRDGYISEDEMDD 105

Query: 123 FIKYLMSEGY 133
            I+Y  S GY
Sbjct: 106 LIQYAFSCGY 115

[Close]
BLAST of CmoCh01G019040 vs. NCBI nr
Match: gi|703145680|ref|XP_010108597.1| (putative calcium-binding protein CML10 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 31/99 (31.31%), Postives = 53/99 (53.54%), Query Frame = 1 

Query: 36  VDYKTMSSYGRKSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEF 95
           + YK++ ++  K           Y  ++L+ +  + DT+ DG L   E+K+A K+L A  
Sbjct: 10  ISYKSVQNHSPKPAV--------YDKEKLKSVIRRYDTDGDGNLSRKELKKAFKELGATA 69

Query: 96  PVHLAFKALCQSDRNRDGKLGRDEIDKFIKYLMSEGYVV 135
           P   A +ALC +D+NRDG +  +E+   + Y    GYV+
Sbjct: 70  PGWRAIRALCHADKNRDGFISEEELANLVHYAAQRGYVL 100

[Close]
BLAST of CmoCh01G019040 vs. NCBI nr
Match: gi|590592354|ref|XP_007017256.1| (Calcium-binding EF-hand family protein, putative [Theobroma cacao])

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-07
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1 

Query: 63  ELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGKLGRDEIDK 122
           ++R IFN+ D N+DG L   E+K+A   L +  P   A+ AL  +D N DG +  DE +K
Sbjct: 46  QVRGIFNRFDANKDGRLSKQELKDAFASLGSRMPGFRAWLALQHADANGDGYISEDEFEK 105

Query: 123 FIKYLMSEGYV 134
            +KY +  GY+
Sbjct: 106 LVKYTLKRGYI 116

The following BLAST results are available for this feature:
BLAST of CmoCh01G019040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G019040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3J7_CUCSA3.7e-3176.14Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639750 PE=4 SV=1[more]
A0A061ECW3_THECC5.8e-0836.26Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_01714... [more]
A0A061EED0_THECC7.5e-0841.43Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_01714... [more]
W9S022_9ROSA1.3e-0731.31Putative calcium-binding protein CML10 OS=Morus notabilis GN=L484_000100 PE=4 SV... [more]
A0A061FBR4_THECC3.7e-0739.44Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_03384... [more]
BLAST of CmoCh01G019040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G019040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200029|gb|KGN55187.1|5.3e-3176.14hypothetical protein Csa_4G639750 [Cucumis sativus][more]
gi|590647162|ref|XP_007031825.1|8.3e-0836.26Calcium-binding EF-hand family protein, putative [Theobroma cacao][more]
gi|590647148|ref|XP_007031821.1|1.1e-0741.43Calcium-binding EF-hand family protein, putative [Theobroma cacao][more]
gi|703145680|ref|XP_010108597.1|1.8e-0731.31putative calcium-binding protein CML10 [Morus notabilis][more]
gi|590592354|ref|XP_007017256.1|5.4e-0739.44Calcium-binding EF-hand family protein, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G019040.1CmoCh01G019040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 59..89
score: 2.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 63..91
score: 0.036coord: 99..127
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 59..94
score: 11.891coord: 95..130
score: 8
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 49..126
score: 1.1
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 53..126
score: 5.67
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 108..120
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G019040Cucsa.123720Cucumber (Gy14) v1cgycmoB0319
CmoCh01G019040CmaCh09G002210Cucurbita maxima (Rimu)cmacmoB047
CmoCh01G019040CmaCh01G018460Cucurbita maxima (Rimu)cmacmoB469
CmoCh01G019040Cla020680Watermelon (97103) v1cmowmB434
CmoCh01G019040Csa4G639750Cucumber (Chinese Long) v2cmocuB461
CmoCh01G019040MELO3C016747Melon (DHL92) v3.5.1cmomeB422
CmoCh01G019040ClCG05G019820Watermelon (Charleston Gray)cmowcgB412
CmoCh01G019040CSPI04G24020Wild cucumber (PI 183967)cmocpiB465
CmoCh01G019040Lsi04G015690Bottle gourd (USVL1VR-Ls)cmolsiB412
CmoCh01G019040Cp4.1LG02g07000Cucurbita pepo (Zucchini)cmocpeB450
CmoCh01G019040Cp4.1LG06g01590Cucurbita pepo (Zucchini)cmocpeB465
CmoCh01G019040MELO3C016747.2Melon (DHL92) v3.6.1cmomedB486
CmoCh01G019040CsaV3_4G034270Cucumber (Chinese Long) v3cmocucB0551
CmoCh01G019040Cla97C05G101440Watermelon (97103) v2cmowmbB461
CmoCh01G019040Bhi09G002737Wax gourdcmowgoB0598
CmoCh01G019040CsGy4G022320Cucumber (Gy14) v2cgybcmoB485
CmoCh01G019040Carg27324Silver-seed gourdcarcmoB1129
CmoCh01G019040Carg10598Silver-seed gourdcarcmoB1044
CmoCh01G019040Carg08774Silver-seed gourdcarcmoB0146
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G019040CmoCh09G002150Cucurbita moschata (Rifu)cmocmoB017
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G019040Wild cucumber (PI 183967)cmocpiB428
CmoCh01G019040Wild cucumber (PI 183967)cmocpiB482
CmoCh01G019040Wild cucumber (PI 183967)cmocpiB491
CmoCh01G019040Cucumber (Chinese Long) v2cmocuB424
CmoCh01G019040Cucumber (Chinese Long) v2cmocuB475
CmoCh01G019040Melon (DHL92) v3.5.1cmomeB403
CmoCh01G019040Melon (DHL92) v3.5.1cmomeB442
CmoCh01G019040Watermelon (Charleston Gray)cmowcgB395
CmoCh01G019040Watermelon (Charleston Gray)cmowcgB435
CmoCh01G019040Watermelon (97103) v1cmowmB416
CmoCh01G019040Watermelon (97103) v1cmowmB445
CmoCh01G019040Cucurbita pepo (Zucchini)cmocpeB420
CmoCh01G019040Cucurbita pepo (Zucchini)cmocpeB474
CmoCh01G019040Bottle gourd (USVL1VR-Ls)cmolsiB390
CmoCh01G019040Bottle gourd (USVL1VR-Ls)cmolsiB442
CmoCh01G019040Cucumber (Gy14) v2cgybcmoB193
CmoCh01G019040Melon (DHL92) v3.6.1cmomedB452
CmoCh01G019040Melon (DHL92) v3.6.1cmomedB461
CmoCh01G019040Silver-seed gourdcarcmoB0259
CmoCh01G019040Cucumber (Chinese Long) v3cmocucB0510
CmoCh01G019040Watermelon (97103) v2cmowmbB486
CmoCh01G019040Wax gourdcmowgoB0570
CmoCh01G019040Cucurbita moschata (Rifu)cmocmoB105
CmoCh01G019040Cucurbita moschata (Rifu)cmocmoB141
CmoCh01G019040Cucurbita moschata (Rifu)cmocmoB352
CmoCh01G019040Cucurbita moschata (Rifu)cmocmoB369
CmoCh01G019040Cucurbita moschata (Rifu)cmocmoB376
CmoCh01G019040Cucumber (Gy14) v1cgycmoB0220
CmoCh01G019040Cucumber (Gy14) v1cgycmoB0626
CmoCh01G019040Cucumber (Gy14) v1cgycmoB0642
CmoCh01G019040Cucurbita maxima (Rimu)cmacmoB184
CmoCh01G019040Cucurbita maxima (Rimu)cmacmoB646
CmoCh01G019040Cucurbita maxima (Rimu)cmacmoB779
CmoCh01G019040Cucurbita maxima (Rimu)cmacmoB851