Carg08774 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08774
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Calcium-binding EF-hand family protein, putative
Location	Cucurbita_argyrosperma_scaffold_057 : 960601 .. 960825 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGGAACTGAAGAGAGATCTTCCACCAGATGGATACGAATGAAGACGGCGGGTTTGGGATTGTTCGAGATCGAGAACGCATTGAAGCAACTCGACGCTGAATTTCCAATCCATCTTGCCTACAAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGGAGATCGATGAATTTGTCAAGTACATGTTGAGCGAAGGCTATGTTGTATGA

mRNA sequence

GAAGGAACTGAAGAGAGATCTTCCACCAGATGGATACGAATGAAGACGGCGGGTTTGGGATTGTTCGAGATCGAGAACGCATTGAAGCAACTCGACGCTGAATTTCCAATCCATCTTGCCTACAAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGGAGATCGATGAATTTGTCAAGTACATGTTGAGCGAAGGCTATGTTGTATGA

Coding sequence (CDS)

GAAGGAACTGAAGAGAGATCTTCCACCAGATGGATACGAATGAAGACGGCGGGTTTGGGATTGTTCGAGATCGAGAACGCATTGAAGCAACTCGACGCTGAATTTCCAATCCATCTTGCCTACAAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGGAGATCGATGAATTTGTCAAGTACATGTTGAGCGAAGGCTATGTTGTATGA

Protein sequence

EGTEERSSTRWIRMKTAGLGLFEIENALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

Homology

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BLAST of Carg08774 vs. NCBI nr
Match: KGN55187.1 (hypothetical protein Csa_4G639750 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 18 GLGLFEIENALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 75
          GLGLFEI+NALK+LDAE P+HLAY ALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Sbjct: 41 GLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

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BLAST of Carg08774 vs. NCBI nr
Match: XP_015384273.1 (polcalcin Che a 3-like [Citrus sinensis] >GAY39503.1 hypothetical protein CUMW_044800 [Citrus unshiu])

HSP 1 Score: 55.5 bits (132), Expect = 9.2e-05
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 1   EGTEERSSTRWI-RMKTAGLGLF---EIENALKQLDAEFPIHLAYKALCHADRNIDGKLG 60
           E   E     W+ R  T G G     E+++A K L + FP   A++AL HAD N DG + 
Sbjct: 34  ESVNEEQLMAWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCIN 93

Query: 61  EEEIDEFVKYMLSEGYVV 75
           E+E+ E VKY++  GY +
Sbjct: 94  EDELCELVKYVIKRGYAL 111

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BLAST of Carg08774 vs. NCBI nr
Match: KDO84207.1 (hypothetical protein CISIN_1g039346mg [Citrus sinensis])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 23 EIENALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 75
          E+++A K L + FP   A++AL HAD N DG + E+E+ E VKY++  GY +
Sbjct: 19 ELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKRGYAL 70

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BLAST of Carg08774 vs. NCBI nr
Match: XP_010108598.2 (probable calcium-binding protein CML16 [Morus notabilis])

HSP 1 Score: 52.4 bits (124), Expect = 7.8e-04
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 23  EIENALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 75
           E++ A K+L A  P   A +ALCHAD+N DG + EEE+   V Y    GYV+
Sbjct: 116 ELKKAFKELGATAPGWRAIRALCHADKNRDGFISEEELANLVHYAAQRGYVL 167

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BLAST of Carg08774 vs. NCBI nr
Match: EXC19753.1 (putative calcium-binding protein CML10 [Morus notabilis] >EXC66137.1 putative calcium-binding protein CML10 [Morus notabilis])

HSP 1 Score: 52.4 bits (124), Expect = 7.8e-04
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 23  EIENALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 75
           E++ A K+L A  P   A +ALCHAD+N DG + EEE+   V Y    GYV+
Sbjct: 49  ELKKAFKELGATAPGWRAIRALCHADKNRDGFISEEELANLVHYAAQRGYVL 100

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BLAST of Carg08774 vs. TrEMBL
Match: tr|A0A0A0L3J7|A0A0A0L3J7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-20
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 18 GLGLFEIENALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 75
          GLGLFEI+NALK+LDAE P+HLAY ALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Sbjct: 41 GLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

[Close]

BLAST of Carg08774 vs. TrEMBL
Match: tr|A0A2H5NH46|A0A2H5NH46_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_044800 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-05
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 1   EGTEERSSTRWI-RMKTAGLGLF---EIENALKQLDAEFPIHLAYKALCHADRNIDGKLG 60
           E   E     W+ R  T G G     E+++A K L + FP   A++AL HAD N DG + 
Sbjct: 34  ESVNEEQLMAWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCIN 93

Query: 61  EEEIDEFVKYMLSEGYVV 75
           E+E+ E VKY++  GY +
Sbjct: 94  EDELCELVKYVIKRGYAL 111

[Close]

BLAST of Carg08774 vs. TrEMBL
Match: tr|A0A067H939|A0A067H939_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039346mg PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-04
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 23 EIENALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 75
          E+++A K L + FP   A++AL HAD N DG + E+E+ E VKY++  GY +
Sbjct: 19 ELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKRGYAL 70

[Close]

BLAST of Carg08774 vs. TrEMBL
Match: tr|W9S022|W9S022_9ROSA (Putative calcium-binding protein CML10 OS=Morus notabilis OX=981085 GN=L484_000100 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-04
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 23  EIENALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 75
           E++ A K+L A  P   A +ALCHAD+N DG + EEE+   V Y    GYV+
Sbjct: 49  ELKKAFKELGATAPGWRAIRALCHADKNRDGFISEEELANLVHYAAQRGYVL 100

[Close]

BLAST of Carg08774 vs. TrEMBL
Match: tr|A0A2N9FZ25|A0A2N9FZ25_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20256 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-04
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 23 EIENALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV 75
          E+ENA K L + FP   A +AL HAD N D  +  EE+D+ V Y +  GYV+
Sbjct: 37 ELENAFKSLGSHFPGWRAGRALHHADANGDNSISLEELDDVVNYAMKHGYVL 88

The following BLAST results are available for this feature:

BLAST of Carg08774 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55187.1	3.5e-20	84.21	hypothetical protein Csa_4G639750 [Cucumis sativus]	[more]
XP_015384273.1	9.2e-05	38.46	polcalcin Che a 3-like [Citrus sinensis] >GAY39503.1 hypothetical protein CUMW_0...	[more]
KDO84207.1	2.7e-04	44.23	hypothetical protein CISIN_1g039346mg [Citrus sinensis]	[more]
XP_010108598.2	7.8e-04	46.15	probable calcium-binding protein CML16 [Morus notabilis]	[more]
EXC19753.1	7.8e-04	46.15	putative calcium-binding protein CML10 [Morus notabilis] >EXC66137.1 putative ca...	[more]

BLAST of Carg08774 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg08774 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08774 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3J7\|A0A0A0L3J7_CUCSA	2.3e-20	84.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1	[more]
tr\|A0A2H5NH46\|A0A2H5NH46_CITUN	6.1e-05	38.46	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_044800 PE=4 SV=1	[more]
tr\|A0A067H939\|A0A067H939_CITSI	1.8e-04	44.23	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039346mg PE=4 SV=1	[more]
tr\|W9S022\|W9S022_9ROSA	5.1e-04	46.15	Putative calcium-binding protein CML10 OS=Morus notabilis OX=981085 GN=L484_0001...	[more]
tr\|A0A2N9FZ25\|A0A2N9FZ25_FAGSY	8.8e-04	46.15	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20256 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08774-RA	Carg08774-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08774	Cla020680	Watermelon (97103) v1	carwmB0102
Carg08774	Csa4G639750	Cucumber (Chinese Long) v2	carcuB0112
Carg08774	MELO3C016747	Melon (DHL92) v3.5.1	carmeB0108
Carg08774	ClCG05G019820	Watermelon (Charleston Gray)	carwcgB0104
Carg08774	CSPI04G24020	Wild cucumber (PI 183967)	carcpiB0117
Carg08774	Cucsa.123720	Cucumber (Gy14) v1	carcgyB0123
Carg08774	CmaCh01G018460	Cucurbita maxima (Rimu)	carcmaB0136
Carg08774	CmaCh09G002210	Cucurbita maxima (Rimu)	carcmaB0134
Carg08774	CmoCh09G002150	Cucurbita moschata (Rifu)	carcmoB0144
Carg08774	CmoCh01G019040	Cucurbita moschata (Rifu)	carcmoB0146
Carg08774	Lsi04G015690	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08774	Cp4.1LG06g01590	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08774	Cp4.1LG02g07000	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08774	MELO3C016747.2	Melon (DHL92) v3.6.1	carmedB0110
Carg08774	CsaV3_4G034270	Cucumber (Chinese Long) v3	carcucB0121
Carg08774	Cla97C05G101440	Watermelon (97103) v2	carwmbB0107
Carg08774	Bhi09G002737	Wax gourd	carwgoB0122

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08774	Carg10598	Silver-seed gourd	carcarB124

The following block(s) are covering this gene:

None