Cp4.1LG02g07000 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g07000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 898863 .. 899267 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATCGCACAATCGGAAACCCAGTCGATTGCAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGCGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCAAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAGGTACTTGATGAGCGAAGGCTATGTTGTTTGA

mRNA sequence

ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATCGCACAATCGGAAACCCAGTCGATTGCAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGCGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCAAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAGGTACTTGATGAGCGAAGGCTATGTTGTTTGA

Coding sequence (CDS)

ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATCGCACAATCGGAAACCCAGTCGATTGCAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGCGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCAAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAGGTACTTGATGAGCGAAGGCTATGTTGTTTGA

Protein sequence

MAVLGAQAAAINPINFPFLLFHRQQTKYNRTIGNPVDCKTMSSYGRKSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCKSDRNRDGKLGRDEIDKFIRYLMSEGYVV
Homology
[Close]
BLAST of Cp4.1LG02g07000 vs. TrEMBL
Match: A0A0A0L3J7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639750 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-30
Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 1 

Query: 47  KSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCK 106
           KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC 
Sbjct: 10  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCH 69

Query: 107 SDRNRDGKLGRDEIDKFIRYLMSEGYVV 135
           +DRNRDGKLG +EID+F++Y+MS+GYVV
Sbjct: 70  ADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

[Close]
BLAST of Cp4.1LG02g07000 vs. TrEMBL
Match: A0A061ECW3_THECC (Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_017146 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 44  YGRKSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKA 103
           +G K  +    S   ++  +L  +F + D N DG L   E++ A   L + FP + AF A
Sbjct: 37  FGHKGTSNTKLSPPFFTEAQLTSVFRRFDGNRDGRLSRQELRSAFNSLGSRFPTYRAFAA 96

Query: 104 LCKSDRNRDGKLGRDEIDKFIRYLMSEGYVV 135
           L ++D+N DG +  DE+D  I Y +S GY V
Sbjct: 97  LHQADQNGDGYISEDEMDDLIHYALSCGYHV 127

[Close]
BLAST of Cp4.1LG02g07000 vs. TrEMBL
Match: W9S022_9ROSA (Putative calcium-binding protein CML10 OS=Morus notabilis GN=L484_000100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 1 

Query: 59  YSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCKSDRNRDGKLGRD 118
           Y  ++L+ +  + DT+ DG L   E+K+A K+L A  P   A +ALC +D+NRDG +  +
Sbjct: 25  YDKEKLKSVIRRYDTDGDGNLSRKELKKAFKELGATAPGWRAIRALCHADKNRDGFISEE 84

Query: 119 EIDKFIRYLMSEGYVV 135
           E+   + Y    GYV+
Sbjct: 85  ELANLVHYAAQRGYVL 100

[Close]
BLAST of Cp4.1LG02g07000 vs. TrEMBL
Match: A0A061EED0_THECC (Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_017140 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 63  ELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCKSDRNRDGKLGRDEIDK 122
           EL  +F + D + DG L   ++K A   + + FP + A  ALC++D+NRDG +  DE+D 
Sbjct: 46  ELISVFRRFDGDRDGRLSWQDLKNAFHSIGSRFPSYRALTALCQADKNRDGYISEDEMDD 105

Query: 123 FIRYLMSEGY 133
            I+Y  S GY
Sbjct: 106 LIQYAFSCGY 115

[Close]
BLAST of Cp4.1LG02g07000 vs. TrEMBL
Match: W9RZZ8_9ROSA (Putative calcium-binding protein CML27 OS=Morus notabilis GN=L484_006332 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.3e-07
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1 

Query: 48  SKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCKS 107
           SKAVA   ++ Y+ ++L+++F + DTN+DG L   E+ +A   L + FP   A +AL   
Sbjct: 19  SKAVA---KAPYNEEQLKDVFKKHDTNKDGLLSREELTKAFSSLGSFFPSWRASRALSHV 78

Query: 108 DRNRDGKLGRDEIDKFIRYLMSEGYV 134
           D+NRDG +  +E    +RY+   GYV
Sbjct: 79  DKNRDGFVDENEFSDLVRYVAQLGYV 101

[Close]
BLAST of Cp4.1LG02g07000 vs. NCBI nr
Match: gi|700200029|gb|KGN55187.1| (hypothetical protein Csa_4G639750 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 1 

Query: 47  KSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCK 106
           KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC 
Sbjct: 10  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCH 69

Query: 107 SDRNRDGKLGRDEIDKFIRYLMSEGYVV 135
           +DRNRDGKLG +EID+F++Y+MS+GYVV
Sbjct: 70  ADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

[Close]
BLAST of Cp4.1LG02g07000 vs. NCBI nr
Match: gi|590647162|ref|XP_007031825.1| (Calcium-binding EF-hand family protein, putative [Theobroma cacao])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 44  YGRKSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKA 103
           +G K  +    S   ++  +L  +F + D N DG L   E++ A   L + FP + AF A
Sbjct: 37  FGHKGTSNTKLSPPFFTEAQLTSVFRRFDGNRDGRLSRQELRSAFNSLGSRFPTYRAFAA 96

Query: 104 LCKSDRNRDGKLGRDEIDKFIRYLMSEGYVV 135
           L ++D+N DG +  DE+D  I Y +S GY V
Sbjct: 97  LHQADQNGDGYISEDEMDDLIHYALSCGYHV 127

[Close]
BLAST of Cp4.1LG02g07000 vs. NCBI nr
Match: gi|703145680|ref|XP_010108597.1| (putative calcium-binding protein CML10 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 1 

Query: 59  YSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCKSDRNRDGKLGRD 118
           Y  ++L+ +  + DT+ DG L   E+K+A K+L A  P   A +ALC +D+NRDG +  +
Sbjct: 25  YDKEKLKSVIRRYDTDGDGNLSRKELKKAFKELGATAPGWRAIRALCHADKNRDGFISEE 84

Query: 119 EIDKFIRYLMSEGYVV 135
           E+   + Y    GYV+
Sbjct: 85  ELANLVHYAAQRGYVL 100

[Close]
BLAST of Cp4.1LG02g07000 vs. NCBI nr
Match: gi|590647148|ref|XP_007031821.1| (Calcium-binding EF-hand family protein, putative [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 63  ELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCKSDRNRDGKLGRDEIDK 122
           EL  +F + D + DG L   ++K A   + + FP + A  ALC++D+NRDG +  DE+D 
Sbjct: 46  ELISVFRRFDGDRDGRLSWQDLKNAFHSIGSRFPSYRALTALCQADKNRDGYISEDEMDD 105

Query: 123 FIRYLMSEGY 133
            I+Y  S GY
Sbjct: 106 LIQYAFSCGY 115

[Close]
BLAST of Cp4.1LG02g07000 vs. NCBI nr
Match: gi|703145697|ref|XP_010108601.1| (putative calcium-binding protein CML27 [Morus notabilis])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1 

Query: 48  SKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCKS 107
           SKAVA   ++ Y+ ++L+++F + DTN+DG L   E+ +A   L + FP   A +AL   
Sbjct: 19  SKAVA---KAPYNEEQLKDVFKKHDTNKDGLLSREELTKAFSSLGSFFPSWRASRALSHV 78

Query: 108 DRNRDGKLGRDEIDKFIRYLMSEGYV 134
           D+NRDG +  +E    +RY+   GYV
Sbjct: 79  DKNRDGFVDENEFSDLVRYVAQLGYV 101

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g07000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g07000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3J7_CUCSA1.1e-3075.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639750 PE=4 SV=1[more]
A0A061ECW3_THECC1.3e-0735.16Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_01714... [more]
W9S022_9ROSA1.3e-0736.84Putative calcium-binding protein CML10 OS=Morus notabilis GN=L484_000100 PE=4 SV... [more]
A0A061EED0_THECC2.9e-0740.00Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_01714... [more]
W9RZZ8_9ROSA8.3e-0738.37Putative calcium-binding protein CML27 OS=Morus notabilis GN=L484_006332 PE=4 SV... [more]
BLAST of Cp4.1LG02g07000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g07000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200029|gb|KGN55187.1|1.5e-3075.00hypothetical protein Csa_4G639750 [Cucumis sativus][more]
gi|590647162|ref|XP_007031825.1|1.8e-0735.16Calcium-binding EF-hand family protein, putative [Theobroma cacao][more]
gi|703145680|ref|XP_010108597.1|1.8e-0736.84putative calcium-binding protein CML10 [Morus notabilis][more]
gi|590647148|ref|XP_007031821.1|4.1e-0740.00Calcium-binding EF-hand family protein, putative [Theobroma cacao][more]
gi|703145697|ref|XP_010108601.1|1.2e-0638.37putative calcium-binding protein CML27 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g07000.1Cp4.1LG02g07000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 59..89
score: 2.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 99..127
score: 26.0coord: 63..91
score: 0
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 59..94
score: 11.891coord: 95..130
score: 8
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 49..126
score: 2.0
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 53..126
score: 7.12
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 108..120
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g07000Cucsa.123720Cucumber (Gy14) v1cgycpeB0311
Cp4.1LG02g07000CmaCh01G018460Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g07000CmoCh09G002150Cucurbita moschata (Rifu)cmocpeB020
Cp4.1LG02g07000CmoCh01G019040Cucurbita moschata (Rifu)cmocpeB450
Cp4.1LG02g07000Cla020680Watermelon (97103) v1cpewmB559
Cp4.1LG02g07000Csa4G639750Cucumber (Chinese Long) v2cpecuB564
Cp4.1LG02g07000MELO3C016747Melon (DHL92) v3.5.1cpemeB538
Cp4.1LG02g07000ClCG05G019820Watermelon (Charleston Gray)cpewcgB509
Cp4.1LG02g07000CSPI04G24020Wild cucumber (PI 183967)cpecpiB566
Cp4.1LG02g07000Lsi04G015690Bottle gourd (USVL1VR-Ls)cpelsiB462
Cp4.1LG02g07000MELO3C016747.2Melon (DHL92) v3.6.1cpemedB638
Cp4.1LG02g07000CsaV3_4G034270Cucumber (Chinese Long) v3cpecucB0701
Cp4.1LG02g07000Bhi09G002737Wax gourdcpewgoB0725
Cp4.1LG02g07000Carg08774Silver-seed gourdcarcpeB0153
Cp4.1LG02g07000Carg10598Silver-seed gourdcarcpeB1082
Cp4.1LG02g07000Carg27324Silver-seed gourdcarcpeB1167
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g07000Cp4.1LG06g01590Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g07000Cucumber (Chinese Long) v2cpecuB539
Cp4.1LG02g07000Cucumber (Chinese Long) v2cpecuB583
Cp4.1LG02g07000Bottle gourd (USVL1VR-Ls)cpelsiB454
Cp4.1LG02g07000Bottle gourd (USVL1VR-Ls)cpelsiB477
Cp4.1LG02g07000Watermelon (Charleston Gray)cpewcgB528
Cp4.1LG02g07000Watermelon (97103) v1cpewmB541
Cp4.1LG02g07000Watermelon (97103) v1cpewmB576
Cp4.1LG02g07000Melon (DHL92) v3.5.1cpemeB508
Cp4.1LG02g07000Melon (DHL92) v3.5.1cpemeB548
Cp4.1LG02g07000Cucumber (Gy14) v2cgybcpeB224
Cp4.1LG02g07000Cucumber (Gy14) v2cgybcpeB539
Cp4.1LG02g07000Cucumber (Gy14) v2cgybcpeB820
Cp4.1LG02g07000Cucumber (Gy14) v2cgybcpeB955
Cp4.1LG02g07000Melon (DHL92) v3.6.1cpemedB605
Cp4.1LG02g07000Melon (DHL92) v3.6.1cpemedB637
Cp4.1LG02g07000Melon (DHL92) v3.6.1cpemedB648
Cp4.1LG02g07000Silver-seed gourdcarcpeB0265
Cp4.1LG02g07000Silver-seed gourdcarcpeB1136
Cp4.1LG02g07000Cucumber (Chinese Long) v3cpecucB0675
Cp4.1LG02g07000Cucumber (Chinese Long) v3cpecucB0714
Cp4.1LG02g07000Cucumber (Chinese Long) v3cpecucB0722
Cp4.1LG02g07000Cucumber (Chinese Long) v3cpecucB0736
Cp4.1LG02g07000Wax gourdcpewgoB0684
Cp4.1LG02g07000Cucurbita pepo (Zucchini)cpecpeB090
Cp4.1LG02g07000Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG02g07000Cucurbita pepo (Zucchini)cpecpeB264
Cp4.1LG02g07000Cucurbita pepo (Zucchini)cpecpeB414
Cp4.1LG02g07000Cucurbita pepo (Zucchini)cpecpeB471
Cp4.1LG02g07000Cucumber (Gy14) v1cgycpeB0221
Cp4.1LG02g07000Cucumber (Gy14) v1cgycpeB0612
Cp4.1LG02g07000Cucurbita maxima (Rimu)cmacpeB045
Cp4.1LG02g07000Cucurbita maxima (Rimu)cmacpeB679
Cp4.1LG02g07000Cucurbita maxima (Rimu)cmacpeB780
Cp4.1LG02g07000Cucurbita moschata (Rifu)cmocpeB166
Cp4.1LG02g07000Cucurbita moschata (Rifu)cmocpeB633
Cp4.1LG02g07000Cucurbita moschata (Rifu)cmocpeB734
Cp4.1LG02g07000Cucurbita moschata (Rifu)cmocpeB820
Cp4.1LG02g07000Wild cucumber (PI 183967)cpecpiB541
Cp4.1LG02g07000Wild cucumber (PI 183967)cpecpiB584