Carg10598-RA (mRNA) Silver-seed gourd

Overview
NameCarg10598-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_031 : 156070 .. 156474 (-)
Sequence length405
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATTGCACAATCGGAAACCCAGTCGATTACAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGTGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCCAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAAGTACTTGATGAGCGAAGGTTACGTTGTTTGA

mRNA sequence

ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATTGCACAATCGGAAACCCAGTCGATTACAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGTGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCCAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAAGTACTTGATGAGCGAAGGTTACGTTGTTTGA

Coding sequence (CDS)

ATGGCGGTTCTTGGAGCTCAAGCCGCCGCCATTAATCCTATAAATTTCCCCTTCCTCCTCTTCCATCGGCAACAAACCAAATACAATTGCACAATCGGAAACCCAGTCGATTACAAAACGATGTCGTCGTACGGTCGGAAATCGAAGGCGGTGGCCGCCCAGTCGGAGAGCGGGTACTCGGCGAAGGAACTGAGAGAGATATTTAACCAGATGGACACGAATGAAGATGGTGGATTGGGATTGTTCGAGATCAAGGAAGCTTTGAAGCAACTGGACGCTGAATTCCCAGTTCATCTTGCCTTCAAGGCGCTCTGCCAATCCGATCGAAACAGAGATGGAAAGCTTGGTCGGGACGAGATCGATAAGTTCATCAAGTACTTGATGAGCGAAGGTTACGTTGTTTGA

Protein sequence

MAVLGAQAAAINPINFPFLLFHRQQTKYNCTIGNPVDYKTMSSYGRKSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCQSDRNRDGKLGRDEIDKFIKYLMSEGYVV
Homology
[Close]
BLAST of Carg10598-RA vs. NCBI nr
Match: KGN55187.1 (hypothetical protein Csa_4G639750 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 52/88 (59.09%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 47  KSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCX 106
           KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC 
Sbjct: 10  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCH 69

Query: 107 XXXXXXXXXXXXXXXXXXXXXMSEGYVV 135
                                MS+GYVV
Sbjct: 70  ADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

[Close]
BLAST of Carg10598-RA vs. TrEMBL
Match: tr|A0A0A0L3J7|A0A0A0L3J7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 52/88 (59.09%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 47  KSKAVAAQSESGYSAKELREIFNQMDTNEDGGLGLFEIKEALKQLDAEFPVHLAFKALCX 106
           KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC 
Sbjct: 10  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCH 69

Query: 107 XXXXXXXXXXXXXXXXXXXXXMSEGYVV 135
                                MS+GYVV
Sbjct: 70  ADRNRDGKLGEEEIDQFVKYMMSKGYVV 97

The following BLAST results are available for this feature:
BLAST of Carg10598-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55187.12.9e-1759.09hypothetical protein Csa_4G639750 [Cucumis sativus][more]
BLAST of Carg10598-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg10598-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg10598-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3J7|A0A0A0L3J7_CUCSA1.9e-1759.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639750 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg10598Carg10598gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg10598-RA.CDS.1Carg10598-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg10598-RA.exon.1Carg10598-RA.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg10598-RACarg10598-RA-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 63..91
e-value: 0.036
score: 23.2
coord: 99..127
e-value: 35.0
score: 5.3
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 59..89
e-value: 2.3E-5
score: 24.0
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 59..94
score: 11.891
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 95..130
score: 8.627
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 23..131
e-value: 1.6E-10
score: 42.8
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 108..120
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 53..126