CSPI05G15530 (gene) Wild cucumber (PI 183967)

NameCSPI05G15530
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionhigh chlorophyll fluorescence 153
LocationChr5 : 16535834 .. 16538079 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTGCGTAGATAGTAAGGATTGGGAAGCACTAGCAACCGAAACAACCAAGGAGCCAAGTAATAGCATCGTAGTTTGCTTACATTAATTTTGAAAAATACATAAACTTCACATTTGTTTCAAATGGGTAATTGTGAAGAGGTCCATTGAATTGGAGTTGGGCCATCCATTATCATCACACCCATTTACATAACAAACAACTTCAAGCCTTCAACAATGTCCATTCCAATTCCATACACTTCCAATAGGCAATAGCCATGGCCAGGTTCCTTATCTCCACCCGACCCTTTCCCTTTTCCACTCTCCCCCTTGCTCCCCCACGGCCATTCTTCAGACCCTCCATTTTTTCCCCGCCGGTCAGATTCTTCGCCAACCCATCGCCCTCCAGGACCTTACGAGTCGTGACGACTCGTGCCGGCGCCAGCACCAGCAGTTACATCTTCGCCTTCTCCATCCCTTTATCTCTTATTCTCATCACTGTCCTCACCGCCCTTAAAATCGGCGATAACCTTGACAAGAAGTTTCTTGAGGAGGTAACCTCTATTATTCATTTCTAATTTCGCTTCATTTTGTTTGCGGAACTGAATTTGATGAGATTCTGGTGGTTTGCCGTTCAAGTTTGGTTTAGATAAGTTTACTTGAGCTTTGAAATGAGACTTCTATTGTACTGTGGTTTGTGTTTTATTTAATTAAGGCTTACTGTCAACTGTTGAGGAATATCACATTTGCTTATGTTTTACTGTTACAATATGTATGGTTGTTTTGTTTTATGATTTTAGTCTTTGAAGACATGGCTTGGCTTCTTCACATGGCAGCACCTAAACTAGGATTATGCAGTGTTTTATGGGTTTATTGAGGTCAAATATTACAGGGTTGAGACATTGTTACCAAGATGCATTCGAGCTAGCTCTGCAAGAACTGGTTTTACTTACTTATCCATGGGGGTGATTGCTTCAATTTGTTAAGCACACTTTCAAGTTCAATGGGATCAGAAAAAGGAGAGACACCCCCACGGTCCCACCCACGCTAAAGCTGCCCCCTTTGTTCATCAATGCTCAAAAGCTTATTTTTGTAGATTCATGGCCATTTGATTAGATGATCCCCAATTGAATTGGATAATCTAGTACCAGTAAGCTCGAGAGAGGGCCTCATATGTCCTCATTTCTCGCCAATTACCACTACCACTGAGCTTGAGAGAGAGTACCTTAAGGCCAGTTCTGAGATGTTAAATGACTAGACCATGGTTTAATAACCATTTAGTTTATGAGAACTATGCTCTTTTTTTTTGTCACAACTTGTTTTTATATTTCCTAGAGAAATATATGAATTATTATAGCCAAATTTCAAAATGAAACATGTTTTTCAAAACTTAACTTGGACTTTAAAGCTTAAGAAGTAAATAGCAGGAAAAACAAAATCAGATGTGAAAGTAATATTTATAAGCTTAGTTTTCAAAAACCAAAGTTCTTCCCACCTTGGACACCCCATAGGCCTAATGTTCATAACTTACAAGTTTTCCATGTGTGAAAACCCTAAATTAGGACTTCGAAGGCATCCCAAAGCATCTCAAGTTCTTCCCACCTTGATTACCTCGTAGACCTTGCTTAAAGCAGGAATATTTTGGAAGCATTAAAATAGGGAGAGGAAGAAGATGGCAAAGACCATCATGGATGTGTTCGATCATGTAGCTTCACTTAAATTCCACATTCTTGGTTATGAAAGAGCTGGAAAAACACATGACATGTTTCGTTTTTATGTATGGGGAACTGATTTTTTAGGGAAATTGATTCCTATGATTGGGGAATGGGCACTGAGCCTTCTGTTGAATTTTGTTTGTGAAACAGCTTGCTCTTAATCAAGCCATCATGGAGGAAGATGAGGATTACAAAGATGGTTCAGAAATATCTTTTGAAGAAAAACCAACTGTTCCACGAACTCGAAATCGACCTAAAAGAGAAGCTGAGGTATAAATAAACTGCTTACTTCTTTTTTAGAGGTGTTTATATGATCGAATCAGGTGGCTAAGAAATGGTTCAAGGAACTAAGAAACTTCCATGTATATTGTATGTAATTTTTCCCCCTTAATAATGATTAGTTAAAAGTTGGTCGGAATGCTGATTAGCTTAGATATGTAATTATGTTATTGCATATTCTTCAAACTGAAATATCTGTGTAATGGCCTTGATTATGTTCATCATTCAGTAAAAATATCATTAATGGTTCAAATTCAGTTCTTAAATCTTTAAT

mRNA sequence

ATGGCCAGGTTCCTTATCTCCACCCGACCCTTTCCCTTTTCCACTCTCCCCCTTGCTCCCCCACGGCCATTCTTCAGACCCTCCATTTTTTCCCCGCCGGTCAGATTCTTCGCCAACCCATCGCCCTCCAGGACCTTACGAGTCGTGACGACTCGTGCCGGCGCCAGCACCAGCAGTTACATCTTCGCCTTCTCCATCCCTTTATCTCTTATTCTCATCACTGTCCTCACCGCCCTTAAAATCGGCGATAACCTTGACAAGAAGTTTCTTGAGGAGCTTGCTCTTAATCAAGCCATCATGGAGGAAGATGAGGATTACAAAGATGGTTCAGAAATATCTTTTGAAGAAAAACCAACTGTTCCACGAACTCGAAATCGACCTAAAAGAGAAGCTGAGGTATAA

Coding sequence (CDS)

ATGGCCAGGTTCCTTATCTCCACCCGACCCTTTCCCTTTTCCACTCTCCCCCTTGCTCCCCCACGGCCATTCTTCAGACCCTCCATTTTTTCCCCGCCGGTCAGATTCTTCGCCAACCCATCGCCCTCCAGGACCTTACGAGTCGTGACGACTCGTGCCGGCGCCAGCACCAGCAGTTACATCTTCGCCTTCTCCATCCCTTTATCTCTTATTCTCATCACTGTCCTCACCGCCCTTAAAATCGGCGATAACCTTGACAAGAAGTTTCTTGAGGAGCTTGCTCTTAATCAAGCCATCATGGAGGAAGATGAGGATTACAAAGATGGTTCAGAAATATCTTTTGAAGAAAAACCAACTGTTCCACGAACTCGAAATCGACCTAAAAGAGAAGCTGAGGTATAA
BLAST of CSPI05G15530 vs. TrEMBL
Match: A0A0A0KTR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G440100 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.7e-64
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 1

Query: 1   MARFLISTRPFPFSTLPLAPPRPFFRPSIFSPPVRFFANPSPSRTLRVVTTRAGASTSSY 60
           MARFLISTRPFPFSTLPLAPPRPFFRPSIFSPPVRFFANPSPSRTLRVVTTRAGASTSSY
Sbjct: 1   MARFLISTRPFPFSTLPLAPPRPFFRPSIFSPPVRFFANPSPSRTLRVVTTRAGASTSSY 60

Query: 61  IFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDYKDGSEISFEEKPTV 120
           IFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDY+DGSEISFEEKPTV
Sbjct: 61  IFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDYEDGSEISFEEKPTV 120

Query: 121 PRTRNRPKREAEV 134
           PRTRNRPKREAEV
Sbjct: 121 PRTRNRPKREAEV 133

BLAST of CSPI05G15530 vs. TrEMBL
Match: M5X9K9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026290mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.0e-18
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 1

Query: 31  SPPVRFFANPSPSRTLRVVTTRAGASTSSYIFAFSIPLSLILITVLTALKIGDNLDKKFL 90
           SP  RF +  +   T   V TRAG +T+ Y+FAF +PLSLI +TV T+++I D LD++FL
Sbjct: 15  SPATRFSSRQARGLT---VVTRAGPTTNQYVFAFVMPLSLIAVTVFTSMRIADKLDEEFL 74

Query: 91  EELALNQAIMEEDEDYKDGSEISFEEKPTVPRTRNRPKRE 131
           EE+A+NQAI E DED  D  ++  EEKP +PRTRNRPKRE
Sbjct: 75  EEIAINQAIRETDED--DEVDMPIEEKPALPRTRNRPKRE 109

BLAST of CSPI05G15530 vs. TrEMBL
Match: A0A0V0H127_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-17
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 1

Query: 43  SRTLRVVTTRAGASTSSYIFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEE 102
           SR L VVT   G S+ SYIFA   PLSL+ IT+ T+ ++ DNLD+KFLEELA+N+ I E 
Sbjct: 46  SRGLSVVTRAGGISSGSYIFALVFPLSLLAITIFTSARVADNLDQKFLEELAVNETIAEG 105

Query: 103 DEDYKDGSEIS-FEEKPTVPRTRNRPKREAE 133
           +ED  DGS ++  EEKP  PRTRNRPKRE E
Sbjct: 106 EED--DGSAVTPLEEKPATPRTRNRPKREVE 134

BLAST of CSPI05G15530 vs. TrEMBL
Match: M1A8U3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401006753 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-17
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 1

Query: 43  SRTLRVVTTRAGASTSSYIFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEE 102
           SR L VVT   G S+ SYIFA   PLSL+ IT+ T+ ++ DNLD+KFLEELA+N+ I E 
Sbjct: 47  SRGLSVVTRAGGISSGSYIFALIFPLSLLAITIFTSARVADNLDQKFLEELAVNETIAEG 106

Query: 103 DEDYKDGSEIS-FEEKPTVPRTRNRPKREAE 133
           +ED  DGS ++  EEKP  PRTRNRPKRE E
Sbjct: 107 EED--DGSAVTPLEEKPATPRTRNRPKREVE 135

BLAST of CSPI05G15530 vs. TrEMBL
Match: A0A0K9R2S2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113190 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.0e-17
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 1

Query: 25  FRPSIFSPPVRFFANPSPSRTLRV-VTTRAGASTSSYIFAFSIPLSLILITVLTALKIGD 84
           F  S+ S  VRF       R   V V TRAG +T+ +IFAF  PLSL+ ITV+TAL+IGD
Sbjct: 27  FPTSLRSSAVRFSGELDRRRMRGVSVITRAGPTTNQFIFAFVFPLSLLAITVVTALRIGD 86

Query: 85  NLDKKFLEELALNQAIMEEDEDYKDGSEISF--EEKPTVPRTRNRPKRE 131
            L++KFLEELA+N+AI E +E+  DG+E+    +E+P +PR RNRPKRE
Sbjct: 87  RLEQKFLEELAMNEAIREAEEENDDGTEVVIPRKEEPALPRARNRPKRE 135

BLAST of CSPI05G15530 vs. TAIR10
Match: AT4G31560.1 (AT4G31560.1 high chlorophyll fluorescence 153)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-16
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1

Query: 13  FSTLPLAPPRPFFRPS----IFSPPVRFFANPSP-----SRTLR--VVTTRAGASTSSYI 72
           F ++P+ P +  F  S    + SPP   F +        +R +R   V TRAG STSSY+
Sbjct: 5   FVSIPMQPTQISFPASSSQPLLSPPANNFTDGGAGGLCLTRRIRDSSVVTRAGPSTSSYL 64

Query: 73  FAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDYKDGSEISFE---EKP 131
            AF+IP +LI  TV T++KI D LD+ FLE++ALNQAI   ++      +IS +   ++P
Sbjct: 65  LAFAIPATLIAATVFTSIKIADKLDEDFLEDIALNQAIKAAEKGENGEGDISLDDVIQEP 124

BLAST of CSPI05G15530 vs. NCBI nr
Match: gi|449445051|ref|XP_004140287.1| (PREDICTED: uncharacterized protein LOC101209610 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 1

Query: 1   MARFLISTRPFPFSTLPLAPPRPFFRPSIFSPPVRFFANPSPSRTLRVVTTRAGASTSSY 60
           MARFLISTRPFPFSTLPLAPPRPFFRPSIFSPPVRFFANPSPSRTLRVVTTRAGASTSSY
Sbjct: 1   MARFLISTRPFPFSTLPLAPPRPFFRPSIFSPPVRFFANPSPSRTLRVVTTRAGASTSSY 60

Query: 61  IFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDYKDGSEISFEEKPTV 120
           IFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDY+DGSEISFEEKPTV
Sbjct: 61  IFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDYEDGSEISFEEKPTV 120

Query: 121 PRTRNRPKREAEV 134
           PRTRNRPKREAEV
Sbjct: 121 PRTRNRPKREAEV 133

BLAST of CSPI05G15530 vs. NCBI nr
Match: gi|659072486|ref|XP_008465810.1| (PREDICTED: uncharacterized protein LOC103503402 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 4.3e-57
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 1

Query: 1   MARFLISTRPFPFSTLPLAPPRPFFRPSIFSPPVRFFANPSPSRTLRVVTTRAGASTSSY 60
           MARFLISTRPFPFS+LPLAPPR FFRP  FSPPVRF A+PSPSRTLRVV TRAGASTSSY
Sbjct: 1   MARFLISTRPFPFSSLPLAPPRAFFRPFTFSPPVRFSAHPSPSRTLRVVKTRAGASTSSY 60

Query: 61  IFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDY-KDGSEISFEEKPT 120
           IFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDY KDG+EISFEEKPT
Sbjct: 61  IFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDYEKDGTEISFEEKPT 120

Query: 121 VPRTRNRPKREAEV 134
           +PRTRNRPKREAEV
Sbjct: 121 LPRTRNRPKREAEV 134

BLAST of CSPI05G15530 vs. NCBI nr
Match: gi|645251101|ref|XP_008231524.1| (PREDICTED: uncharacterized protein LOC103330698 [Prunus mume])

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19
Identity = 67/136 (49.26%), Postives = 86/136 (63.24%), Query Frame = 1

Query: 1   MARFLISTRPFPFSTLPLAPPRPFFRPSI------FSPPVRFFANPSPSRTLRVVTTRAG 60
           MAR LIS      ++L L+PP P  R  +       SP  RF    +   T   V TRAG
Sbjct: 1   MARLLISNT----ASLTLSPPAPSSRALLNPPHVPISPATRFSCRQARGLT---VVTRAG 60

Query: 61  ASTSSYIFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDYKDGSEISF 120
            +T+ Y+FAF +PLSLI +TV T+++I D LD+ FLEE+A+NQAI E DED  D  ++  
Sbjct: 61  PTTNQYVFAFVMPLSLIAVTVFTSMRIADKLDEDFLEEIAINQAIRETDED--DEVDMPI 120

Query: 121 EEKPTVPRTRNRPKRE 131
           EEKP +PRTRNRPKRE
Sbjct: 121 EEKPALPRTRNRPKRE 127

BLAST of CSPI05G15530 vs. NCBI nr
Match: gi|694384373|ref|XP_009368089.1| (PREDICTED: uncharacterized protein LOC103957632 [Pyrus x bretschneideri])

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 67/135 (49.63%), Postives = 87/135 (64.44%), Query Frame = 1

Query: 1   MARFLISTRPFPFSTLPLAPP--RPFFRPSIFSPPVRFF-ANPSPSRTLR--VVTTRAGA 60
           MA+ LIS      ++L L+PP   P  R S   P V    A+  P R  R   V TRAG 
Sbjct: 1   MAKLLISNT----ASLTLSPPPLAPLSRASFIPPRVPITPASRYPGRQTRGLAVVTRAGP 60

Query: 61  STSSYIFAFSIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDYKDGSEISFE 120
           +TS Y+FAF +PLSLI +TV T++++ D LD+ FLEE+A+NQAI E DED +  ++ S E
Sbjct: 61  TTSQYVFAFVLPLSLIAVTVFTSIRVADKLDRDFLEEMAINQAIRETDEDGE--ADSSIE 120

Query: 121 EKPTVPRTRNRPKRE 131
           E P +PRTRNRPKRE
Sbjct: 121 EMPALPRTRNRPKRE 129

BLAST of CSPI05G15530 vs. NCBI nr
Match: gi|470134475|ref|XP_004303075.1| (PREDICTED: uncharacterized protein LOC101296400 [Fragaria vesca subsp. vesca])

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 66/126 (52.38%), Postives = 83/126 (65.87%), Query Frame = 1

Query: 14  STLPLAPPRPFFRPSIFSPP----VRFFAN---PSPSRTLRVVT--TRAGASTSSYIFAF 73
           ++L L+PP  F   + F PP    VRF      PS S+  R VT  TRAG +T  Y+FAF
Sbjct: 13  ASLTLSPPSLFSSRASFKPPHVPPVRFLLAGKPPSNSKNSRGVTVVTRAGPTTQQYLFAF 72

Query: 74  SIPLSLILITVLTALKIGDNLDKKFLEELALNQAIMEEDEDYKDGSEISFEEKPTVPRTR 131
            +PLSLI  TV T+++I D LD+ +LEE+A+NQAI E DED  D  ++S EEK  VPRTR
Sbjct: 73  FLPLSLIAFTVFTSVRIADKLDRDYLEEVAINQAIRETDED--DEVDMSLEEKSAVPRTR 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KTR1_CUCSA9.7e-6499.25Uncharacterized protein OS=Cucumis sativus GN=Csa_5G440100 PE=4 SV=1[more]
M5X9K9_PRUPE8.0e-1855.00Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026290mg PE=4 S... [more]
A0A0V0H127_SOLCH3.0e-1759.34Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
M1A8U3_SOLTU3.0e-1759.34Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401006753 PE=4 SV=1[more]
A0A0K9R2S2_SPIOL4.0e-1753.21Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G31560.16.7e-1642.42 high chlorophyll fluorescence 153[more]
Match NameE-valueIdentityDescription
gi|449445051|ref|XP_004140287.1|1.4e-6399.25PREDICTED: uncharacterized protein LOC101209610 [Cucumis sativus][more]
gi|659072486|ref|XP_008465810.1|4.3e-5792.54PREDICTED: uncharacterized protein LOC103503402 [Cucumis melo][more]
gi|645251101|ref|XP_008231524.1|2.7e-1949.26PREDICTED: uncharacterized protein LOC103330698 [Prunus mume][more]
gi|694384373|ref|XP_009368089.1|1.4e-1849.63PREDICTED: uncharacterized protein LOC103957632 [Pyrus x bretschneideri][more]
gi|470134475|ref|XP_004303075.1|1.8e-1852.38PREDICTED: uncharacterized protein LOC101296400 [Fragaria vesca subsp. vesca][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010190 cytochrome b6f complex assembly
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0008150 biological_process
cellular_component GO:0042651 thylakoid membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G15530.1CSPI05G15530.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37753FAMILY NOT NAMEDcoord: 4..132
score: 1.8
NoneNo IPR availablePANTHERPTHR37753:SF1SUBFAMILY NOT NAMEDcoord: 4..132
score: 1.8