CSPI05G13720 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G13720
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pre-mRNA splicing factor PRP38 family protein
Location	Chr5 : 13678490 .. 13685834 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTACCTTTTGATGTCATTTCTTCAATTAATTTTTTCAGATTGGATTTCTCTACTTAAGATATGTTGCAGATCCAAAGACTCTCTGGAATTGGTTTGAACCGTATGTTAAAGATGATGAGGTATGTGATGCATATAGGACCTTGATTATCATTACTGTTACTATTATTTCTATTGTTATTTTAATTTTGTGGATTGGTACTAAGCATTATGGTTAGGATGCATGTAAGTTGCTTTCTGGGTTCTGCTACCTTCAATATATATACATTGATAATTGAGTAAGTGGAGCTGGGAGGTTTAGGAATTAGAATTATGTAATGGGGCTTTGTGCTGGAATGATTGAGGGTTTCTCCTATAAATTGCCTTTCCACATTTTTTGCTACCTTTTTATTTCTTTGCTTGGCAAGTTTTGCTTGGCCTCGGTTGTCAAGATATCCATAAAAATCTAAGTTCTTTGCTTGAAAATTTTGCATGGGAGAGTAAACATCCAAGACCATCTCAAGAGACTTTTCGTTTGTGATGCACCCACAAAGCTACATTCTCTATAGGTGGTTCGAGGATCTTGAACCTTTCTATGAGGTTGCTAGTTTGCTTATTCCCTTAGCAGTCAATTGGGATTGGTTTTGCTCTTAGCAGAAACTGCAGCTTTATGCTTGAGGAGGCTCTCTTGAACTTTCCCTTTTAGAATAAGTGTAGTGGGTTTTAGAACTTTCCCTTTTAGAATAAGTGTAGTGGGTCCCTTTTAGAACTTTCCCTGTTCTGTGGCATGGATGTTTCTATTTTTGCTATATTTCGTGAATTTGACTAGTGAGGAAGAGCAGGATTTATTGAGGGGTGAATAGAACTTGGGAGGAGGATGCTAGCCGCTAGGTTTAATGTTTTTTAATGGGCATTCGTTACTTAAGCTTTTGTAATTACTACCTTGGAATGCTTTTGGATAGGAGTTTCTTCCTATAGGTTATTGTTGGGACCTGTTTTATGCTTTTTTTTTTTCCTTGTACTTCTTTCATTTTTATACAATGAAAATTCAGTTTCTTACTAAGAAAAATTCTTAGGCAGTTTTTCTCGGATTAGTTTGGGTAAGTGGGATTTGGAAGTGCCTATATTCTCTTGCCTCCTTTGGACCTTTCCAGTAAACACTCATTTTCATCGTTCTATAGCTCTTATTATCATCTCTTTTGACCAATTGGAGATTTATTTTTAACTCTTTTGGTTTGGGTATCCTGCCTTTTTTAGTAAATTTTACATCAGTGAAATTTGTTTCCTATAATGAAAAAGAGGAAGCGAACGCCCTTATCAGTCTATGTTCACTTCTTCCAATAATTTGGGGATTTTACTTGTAACTTCCATGTTTAAGCTTTTTTCAGAGGGTTACTAGTGTTCTTCAATTATTGTTTGTAGTCATTTTCCCCTTCCAACAAATAACAGAAAATAAAATTCTTCCTCAGAAGTTGATGGCAGTTCGCATGTTTTTCTTTTTAATGGATTTAATAAGAATTTAAAGCTATAAAAGGCGGAAAAGAAATGACTGACTTGATGTGTTTCAGGAATTTTCACCAGGATCCCATGGACGAATCACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGGTCAGGTTATATACCAACATTTCTCCTTAAATATCACGTTTCTTGGTTATATTTTTCTTTTTTTCTTTTTTAACTTGCGTCACAGACATGATAAATTGTGTTGGCATTTCTCTAGTGTTTAACCATGGGAATGCTGCATTGTCCATTCATGGTTAGAAGATATTATTAAGTGTTGTAATTTGAGTATAATAGAGTTAGAGATTTTCACCAAGAGGATGAGATGCAAAAAAGTTCAGGAAAAGAACAACAGCATAACAGTAACCCCTTCCCTCCCAATTGAAGTCATTAGGTTCTTTTCATTTCCATTAAAACATCTCATATTTCGTTGGCTTGTCATGGTGATTCAAAGTCATGTTCTCTGACTTGAGCTGGTGAAGTTGACTTCATAATGAGGAGTCTTGTCCACTTTGACCTTTTCATTTTTTTGTTATTTGTCTTTTCTAATGTATCCAATAGTTTCTTGACTTCCTTATATAACATTTTCTTGTAGTTCTATTTCCCACTTATGCTCCTTGTAGATTAGATGGAGTATGGTTGTTTTGATTTTAACCTGAGATACCTTCTAGATTTCTGCCTTTCATGAACTTTCGTAATGTGATGTGGAAAAGAAGTTCTGGCCTTGAGATTATAACTAATTATTTTCCTCACATGTTCAGATCATGAATAAAATGTTTTTTTTTTCTTTCTGAAATGCATAAAAAATTTCCATCGATATCATGGAAAGAGACTAACGCTTAAAATTACAATGAAACAAAAATAAAAGAAACAAATAATAGCATTAAAGCTTCCGCAATCTGATGACAAACAAAAGAAAAACCATGAAAGATAAAGGAAACCATTACAAACAAAATACTTGAAAAGAACAAATATAGAAGACTTAGGAAGATAACATCACATATACTTCCAAACGAAAAATCCAGCTGGAGGTACTTTGACAGTAAAACCTACAATTGATGAAACATAGCCTTAAAAAAATCTCCAAAAACTTAATGTTTTAAGGAATGTTATTGCTCACTCTGTTGTAGTATGTGGCGAAAAGAGATGAATCAAGTGTATAAGATGAAAAAAAAATAAAAAATGAGTCTAAGGTTTTACTTTTTATTTTATCACATTTTGTAATCGAAAAGTGTGGTTAGTGACTTCACCGAATTGGATAATGGAGGAGATGAATGGAGACTAAATATGGGTTTGTATTTGGCCAACTGAATGGAATGATCGTGTTAGGATCCCTCCTAATAAGGAATATCTCAAGAAGAAAACATGAACTCAAGAACTCTTAAAAGAATATTCAAATACGAAATATATATTAGATCATAAGAGCAAGTAACAAGTAACCCTAGCCTTTTGAGAGGGCTAGACTTTCCCAAGGTTCCCTTACAAAATTCTCCACACCTTTCCCCAACCCCTATCCTACTATTTATAACAAAAAGACCTAACCAGCTTACTAACTATTTACTAATATGCCCCCACTAACAACCATATTCATTTTCTACTAATAATCCACTATTTTCCTATCTAGTGTCCTTATATTACTCCACTCTTCGAAGACACCTTGTCCTCAAGGTGTGCTTACAAAATACAAACTTTGAACTCTCTATGAGACCCGGCCTTCTCGAAAGAAATTTCCTTCAACTTATTCTTGAAATTCCATTGGATTGTAATAATTTCCCTTGCATCTAACCCTTTATACAACCCTAGACTACAAGAACTTTCCCAAATCTTCATTCTTCTCACACGGCAAGTGACCCCAATTGACCAATTGCATTTCCCTAAGCCTATTTCCATGCCACTTGCATTTTAGTTTGAAGCTCTTCCTAAGCCCACAATCAACTTTATGATCCCAAACCCAATTCAATTTCATGGCCCAGACACCATCTTCCTCAGAATTACCGAAGAGCTTCAGGCAATTCCAGTCCATTTTCAATATCCTTTTGTGCCACTCTAACAAATGGGTCTCAATGAATTTAGCAAATTCAAGCCTATTAGTTCTCTTTTTTCCTTTATGAAGGTTGTATTTATTTGTTTTCAGCATCTCATTTCTGGCCCACCACCCATATTCGAATAGGGGTTCAACTTCCTTAGTCACCACCCATATTCGAATAGGGGTTCAACTTCCTTAGTCACCACCCATATTCGAATAGGGGTTCAACTTCATTGATAGTCAACACTTTTTCCTTTGAGGTATAATGGGCCTCATCCATTACTTTTGCAATCAGCCCATATAGCAACTTTTTAGACCACTTTTCATTAGATTCTTTTCCTAATTGCCATCCCACGTGATATGATTTAACCATTAAGGTTTGCATGTGTCAATCCTTCTCCCAGCCTCCACTTTGTTTTTCTTGCCATTTATTAGGAATTTGAGCCCCAATTTCTCTACATAAGCCCAATCCCAATCCATTTGAGAAAATCTGGGCCTTTACATTTAGTTTCAGCCCATTTAACAACTCAGAATTGCTGCTGCAACTGTCTAATTTCTGGCCCCATCGTCCGACACTTCACATGGGTTGAATAATTCTTTTTCTTTTTCACGAAATCTTCCTTCTCCTTTATGAGCTTTCTTCTTTGTCCGCAGCTGCTCACTCGTTCAGTAAATTTCAAAGCATCATTTGAAAAAGTTTCTGATCTCACTTGCGGCTTCATTGCTATCCGTGTTCCGACAAACTAGGTTCGTGCCTTAGATCGACTACCACCCACACACCCTGTCTCCATCTCCTCTTCCCGCACCTGAACTTTCTGACAACCACTCTTCTTCTTTCTCTTGCCATCTGTGAGCGTCTCAGTTTCCTTCCTTCGCCGCGACTTCTGTTCATCATCGCCTCGATTTTACGTGATAACCCAAAACGATTCCATTCGCTAGTCTCTTCATGATCTCTTTACTAATTCCAGCTCCACTTTCTTCCTTGTCATTACCTCTTTTATTTCCCTCTGATGATCTTGACCTTCGAGATTCCGTTGTTCATCTTCTTCGCTGCATAACTTCCTCATCCCTTCCCTAATTTGATATAGTTTGAACGCCACAAAAGAACAACTAAAGTACCGTACCTCAACAAACTTTTGGCCTATGTATATGATCGACTCCCAACGCCATCGCTCCAATGAACCATTTCTTCTATTTTCATCAGTTGTATTTTGGTCGACTTGTTCCACAAAGGTATTGTTTGATTCTTCTTTTTGTTTCCTTCACTACCATTGACTGTCATTGATACCTTTCTCAACCGTTCCTTTTTCTCCCGGCCTCTTATCCTTCTCATCAATGGTGTTCGTCTCCTCTCCCATGCTTTTGCCTCCTCTGTTCGGCATTTTCGTTTCCACCAAGTATTTGTCTCCAACCACCTCATCTTTTGTAGTTGGCCATGGGAATGCTCAATTAGATTTGGCTTCCTCGTACCTCCATCTTTTTCATGGTCATTCTCGTATTCCTTCATCTTCAAGTCATTCTTCTATTTCTCTTTTTCTCCAACTTTGATTTCTGCTAGTTTCTTCTCCTTTCTTTCTTTATCTCTTTGCAGCCCTTCAGAAAGCTTTTGATGCATTGATCTAGCACGTCTTTGTATTCTCTCCGCCTTGCAATCCGCAATCCATTTTTGCATGCTCCCATGTCCATGGGGTCTCTCCTCTCTCAACTGCTTCACGTTTGCAATCAGCAACCCATTTAAGCGCTTGCTCTTATGTCCCTTTCTCAATCGCGCCCTGGTCCTCTTCCATCTTTCCTTTCATTTTCAACATAGATCCCTCTAACGCACCAAACTCTTCCCGTCGACGACTAACACTGTTTTTTCATAATTCCTCTGCCAGCCTTTCGACTCTTTTGGACAACACTAGAGCCAAATCTTTAAGTTCCCTAATGTCCTCATTCTTTTCCAACTTCTCCAACGTTTGTTTTTGCGCCATAGTCTATGTCATCCCCAAGATGTTACGACTCTGATACCAATTTGTTAGGAACCCTCCTAACAAGGATTATCTCGAGAAGAAAATACGAACTCAAGAACTTTTAAAAGAACATTCAAATACGAAATATATATCAGATCATAAGAGCTAGTAACAAGTAACCCTAGTCTTTTGAGAGGGCTCGCCCTCTCAAGGTTCCCTTACAAGGAAATCTTTCTACAAAATTCTTCCAACCTCTCCCCAACCCCTATCCTACTATTAATAACAAAAAGACCTAACCAACTAACTATTTACTAATATGCCCCCACTAACAACCATATTCATTTTCTACTAATAATCCACTATTTTTCTATCTAGTGTCCTTACAGATTGTTAAACTATTTTATTTGACTTTTTATCTATTGAATGACAAAATTTGTGTTTGATGTTATCCGGTGGTATTAGTGATTCTGTTGTGTTGGCCAATGGGCGGAATGATCATTATTTCACAGGTTTAAACTGGAACATATGAACCACATATCTGTCTTATATTGCTATTTTTAATCTTCGACTTTGTAGCTAAACAGGTATTAACATTTTGTTTGCCAATTGCAGTATTACTTCGATACCCTTTTCCCTCGTATTCCGGTTCCTGTATTGCGGCAAGTTGTATCTAATCTTGAAAAGTTGAAGCTACCAAGCAAGCATTCAGGTGTGACAGGGGAAACACATCGAATAGGGTCTGAAGACACTGCACGGCGGCCCCCTTCTGTTAAAGCTTCACTTTCAGTTTCCTTTGGACAACGAGCTCCACATCGTGCCTCAACTAGGGATTCATCTCCTGTTCGTCGTACGCTGCCATCATCTGCAAATGATAGAGATAACAACGATGATCTACGAAGATCTCCAAGCGTTCGCCGTAGTCAAAGTCGTGAACATCCAGATAGTAGGGAGAGGAGCAGGGATAGAGAGTTTGACAGGGAGAGGAGCAGGGATAGAGATTATGACAGGGACAGAGATAGAGGAAGGGATAGGGACCGAGATCGAGAACATGATCGGGACAGAGAGAAGTATAGAGATCGGGAAAGGGACCGAGATAGAGAAAGAGAGAAAGCCAGGGATAGGGAAAGGGACAGAGAGCGTGATAGAGAACGAAGTTATGATTACGATCGAAGGACTCATTACAGTGACAGAGAGAGTCGAAGGGACTTTGAAAGGAGTAGCCGTGATGGTGGCACCAGGCATTATCGAAGAAGTCGTAGCCGAAGTAGGAGTCGGAGCAGAAGTAGAAGTCTACAAACGCATCACGAGAGAGAGCCAAGTCCTGCAAGGGGCGGAACAACAGAGAAGGCATCTGTGATATCGAGCAATCTGGCAAAACTAAAAGATATATATGGTGATGTGAGCGAGCAGAAAGGGGATTCGAGCAAAGTTAATAGAAGAGATGGTAGTGGTGAAGAAGTGATTAGACTGGGCGGTTCCTGGAAATAGTGAATGATGAATGGTCTCAAATACAAAGGACCTCCACTCCACTGTATTCAATCACATGTTATCTTCACTTAGAAAACAAATTTTAGTCTTTTATTGGAAAAGGAAGAAAAATCAATGTATTTGTCACTACGTGTTTATAGCATTTATGCATCATCTCTCCTCCCCCGATCAAATTTATTTTATCTTATCAGTTGAATGCCTTGAAGACTTCAGGCAAAATGTAATTCATGCAACCATTGTGGCTGTGTATTAGGTTAAGCTTGACTTCATTAATGGTTCCTCTTCTATTTTGTGGACAATGATTTCTATTCTTTCTCAAAAAAATCATATACTTTCATCAGTAAATTATAAATTATTTTGCATTTTTT

mRNA sequence

ATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGTATTACTTCGATACCCTTTTCCCTCGTATTCCGGTTCCTGTATTGCGGCAAGTTGTATCTAATCTTGAAAAGTTGAAGCTACCAAGCAAGCATTCAGGTGTGACAGGGGAAACACATCGAATAGGGTCTGAAGACACTGCACGGCGGCCCCCTTCTGTTAAAGCTTCACTTTCAGTTTCCTTTGGACAACGAGCTCCACATCGTGCCTCAACTAGGGATTCATCTCCTGTTCGTCGTACGCTGCCATCATCTGCAAATGATAGAGATAACAACGATGATCTACGAAGATCTCCAAGCGTTCGCCGTAGTCAAAGTCGTGAACATCCAGATAGTAGGGAGAGGAGCAGGGATAGAGAGTTTGACAGGGAGAGGAGCAGGGATAGAGATTATGACAGGGACAGAGATAGAGGAAGGGATAGGGACCGAGATCGAGAACATGATCGGGACAGAGAGAAGTATAGAGATCGGGAAAGGGACCGAGATAGAGAAAGAGAGAAAGCCAGGGATAGGGAAAGGGACAGAGAGCGTGATAGAGAACGAAGTTATGATTACGATCGAAGGACTCATTACAGTGACAGAGAGAGTCGAAGGGACTTTGAAAGGAGTAGCCGTGATGGTGGCACCAGGCATTATCGAAGAAGTCGTAGCCGAAGTAGGAGTCGGAGCAGAAGTAGAAGTCTACAAACGCATCACGAGAGAGAGCCAAGTCCTGCAAGGGGCGGAACAACAGAGAAGGCATCTGTGATATCGAGCAATCTGGCAAAACTAAAAGATATATATGGTGATGTGAGCGAGCAGAAAGGGGATTCGAGCAAAGTTAATAGAAGAGATGGTAGTGGTGAAGAAGTGATTAGACTGGGCGGTTCCTGGAAATAG

Coding sequence (CDS)

ATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGTATTACTTCGATACCCTTTTCCCTCGTATTCCGGTTCCTGTATTGCGGCAAGTTGTATCTAATCTTGAAAAGTTGAAGCTACCAAGCAAGCATTCAGGTGTGACAGGGGAAACACATCGAATAGGGTCTGAAGACACTGCACGGCGGCCCCCTTCTGTTAAAGCTTCACTTTCAGTTTCCTTTGGACAACGAGCTCCACATCGTGCCTCAACTAGGGATTCATCTCCTGTTCGTCGTACGCTGCCATCATCTGCAAATGATAGAGATAACAACGATGATCTACGAAGATCTCCAAGCGTTCGCCGTAGTCAAAGTCGTGAACATCCAGATAGTAGGGAGAGGAGCAGGGATAGAGAGTTTGACAGGGAGAGGAGCAGGGATAGAGATTATGACAGGGACAGAGATAGAGGAAGGGATAGGGACCGAGATCGAGAACATGATCGGGACAGAGAGAAGTATAGAGATCGGGAAAGGGACCGAGATAGAGAAAGAGAGAAAGCCAGGGATAGGGAAAGGGACAGAGAGCGTGATAGAGAACGAAGTTATGATTACGATCGAAGGACTCATTACAGTGACAGAGAGAGTCGAAGGGACTTTGAAAGGAGTAGCCGTGATGGTGGCACCAGGCATTATCGAAGAAGTCGTAGCCGAAGTAGGAGTCGGAGCAGAAGTAGAAGTCTACAAACGCATCACGAGAGAGAGCCAAGTCCTGCAAGGGGCGGAACAACAGAGAAGGCATCTGTGATATCGAGCAATCTGGCAAAACTAAAAGATATATATGGTGATGTGAGCGAGCAGAAAGGGGATTCGAGCAAAGTTAATAGAAGAGATGGTAGTGGTGAAGAAGTGATTAGACTGGGCGGTTCCTGGAAATAG

Homology

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BLAST of CSPI05G13720 vs. Swiss-Prot
Match: PR38B_MOUSE (Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-10
Identity = 100/265 (37.74%), Postives = 134/265 (50.57%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           +G  +R  L    +F TLFPRIPVPV + +   ++      K  G  G    I      R
Sbjct: 201 IGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEG-IEEIDRHVERR 260

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           R  S + SLS    +R+P R+ +R  S  R    SS+ DR+   +  R    R ++ RE 
Sbjct: 261 RSRSPRRSLSP---RRSPRRSRSR--SHHREGHGSSSFDRELEREKERQRLEREAKEREK 320

Query: 121 PDSRERSRDREFDRERSRDRDYDRDRDRGRDRD---RDREHDRDREKYRDRERDRDRERE 180
              R RS DR  DR RSR R+  R R R RDR    RDR+ +R++E  R R RDRD ++E
Sbjct: 321 ERRRSRSIDRGLDRRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKE 380

Query: 181 KARDRERDRERDRERSY------DYDRRTHYSDRESRR-------DFERSSRDGGTRHYR 240
           +  DRERDRER RERS       D + + H  D+E RR         ++ SR        
Sbjct: 381 RGSDRERDRERSRERSKEQRSRGDGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKH 440

Query: 241 RSRSRS---RSRSRSRSLQTHHERE 247
           RSRSR+   RSRSRS+   + H+ E
Sbjct: 441 RSRSRNAGKRSRSRSKDKSSRHKNE 459

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BLAST of CSPI05G13720 vs. Swiss-Prot
Match: PR38B_RAT (Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-09
Identity = 99/291 (34.02%), Postives = 142/291 (48.80%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           +G  +R  L    +F TLFPRIPVPV + +   ++      K  G  G    I      R
Sbjct: 200 IGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEG-VEEIDRHIERR 259

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           R  S + SLS    +R+P R+ +R  S  R    SS+ DR+   +  R    R ++ RE 
Sbjct: 260 RSRSPRRSLSP---RRSPRRSRSR--SHHRDGHGSSSFDRELEREKERQRLEREAKEREK 319

Query: 121 PDSRERSRDREFDRERSRDRDYDRDRDRGRDRD---RDREHDRDREKYRDRERDRDRERE 180
              R RS DR  DR RSR R+  R R R RDR    RDR+ +R++E  R R RDRD +++
Sbjct: 320 ERRRSRSLDRGLDRRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKD 379

Query: 181 KARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSR 240
           +  DRERDRER RERS +   R    +++ + D E        +  ++  SRSRSR R  
Sbjct: 380 RGNDRERDRERSRERSKEQRSRGEGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKH 439

Query: 241 SLQTHHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRR 289
             ++        +R  + +KAS    N +K K      S  +G +  V +R
Sbjct: 440 RSRSRSRNAGKRSRSRSKDKASK-HKNESKEKSNKRSRSGSQGRTGSVEKR 483

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BLAST of CSPI05G13720 vs. Swiss-Prot
Match: PR38B_HUMAN (Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.9e-09
Identity = 99/269 (36.80%), Postives = 138/269 (51.30%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           +G  +R  L    +F TLFPRIPVPV + +   ++      K  G  G    I      R
Sbjct: 200 IGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEG-AEEIDRHVERR 259

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           R  S + SLS    +R+P R+ +R  S  R    SS+ DR+   +  R    R ++ RE 
Sbjct: 260 RSRSPRRSLSP---RRSPRRSRSR--SHHREGHGSSSFDRELEREKERQRLEREAKEREK 319

Query: 121 PDSRERSRDREFDRERSRDRDYDRDRDRGRDRD---RDREHDRDREKYRDRERDRDRERE 180
              R RS DR  +R RSR R+  R R R RDR    RDR+ +R++E  R R RDRD ++E
Sbjct: 320 ERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKE 379

Query: 181 KARDRERDRERDRERS---------------YDYDRRTHYSD-RESRRDFERS-SRDGGT 240
           +  +RE++RER RERS                D D R H  D R+S+++ + S SR    
Sbjct: 380 RGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRER 439

Query: 241 RHYRRSRSRS---RSRSRSRSLQTHHERE 247
           +H  RSRSR+   RSRSRS+   + H+ E
Sbjct: 440 KHRSRSRSRNAGKRSRSRSKEKSSKHKNE 462

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BLAST of CSPI05G13720 vs. Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=3 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-08
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 1


Query: 115 SQSREHPDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDR 174
           + SRE   S+ R +DRE ++++ R+R  DRDRDRGRDRDRD++ ++DR+K RDR+RDRD+
Sbjct: 21  THSREDGLSKPRDKDREREKDKDRERHRDRDRDRGRDRDRDKDKEKDRDKERDRDRDRDK 80

Query: 175 EREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRS---- 234
           +R++     R+R   R+RS D+DR     D E RRD E   RDG  RH  RSRSRS    
Sbjct: 81  DRDRHHRHHRERREHRDRSDDHDRH-RSRDSERRRDHE---RDGRRRHRSRSRSRSRGRD 140

Query: 235 -RSRSRSRS 239
            RSRSRSRS
Sbjct: 141 RRSRSRSRS 145

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BLAST of CSPI05G13720 vs. Swiss-Prot
Match: FRAY2_DICDI (Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-08
Identity = 93/238 (39.08%), Postives = 120/238 (50.42%), Query Frame = 1


Query: 32  SNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRR 91
           S+L +    + H+  + E H    E   +     K+S S S  +R   R   RD S   +
Sbjct: 687 SSLSESSDSTSHTSSSDE-HSSRYESDRKSYKKKKSSSSSSNSKRDRERERDRDRS--NK 746

Query: 92  TLPSSANDRDNNDDLRRSPSVRRSQSREHPDSRERSRDREFDRERSRDRDYDRDRDRGRD 151
           T  +S +   + D  R      RS+ R+    RER RDRE DR+RSRDR  DR RDR RD
Sbjct: 747 TYKNSRSRNVSRDRERERDRHNRSRDRDRERERERDRDRERDRDRSRDRSRDRSRDRERD 806

Query: 152 RDRDREHDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDF 211
           R RDR  DRDR + R R+R R+R+    RDR RDR RDR RS D D R    DR      
Sbjct: 807 RSRDRSRDRDRSRDRSRDRSRERD----RDRSRDRSRDRSRSRDSDSRDRSRDRSRSHSN 866

Query: 212 ERSSRDGGTRHYRRSRS----RSRSRSRSRSLQTHHEREPSPARGGTTEKASVISSNL 266
            R SR   +R+  R RS    RSR RSR R  ++   ++ S  RG +  K + I S L
Sbjct: 867 RRRSRSRDSRNKSRDRSSDSDRSRDRSRDRDYKSSKYKKSS--RGTSGRKNNKIQSKL 915

[Close]

BLAST of CSPI05G13720 vs. TrEMBL
Match: A0A0A0KT86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G348070 PE=4 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 5.8e-149
Identity = 302/303 (99.67%), Postives = 303/303 (100.00%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR
Sbjct: 61  MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 120

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPS+RRSQSREH
Sbjct: 121 RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSIRRSQSREH 180

Query: 121 PDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKAR 180
           PDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKAR
Sbjct: 181 PDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKAR 240

Query: 181 DRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQ 240
           DRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQ
Sbjct: 241 DRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQ 300

Query: 241 THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGG 300
           THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGG
Sbjct: 301 THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGG 360

Query: 301 SWK 304
           SWK
Sbjct: 361 SWK 363

[Close]

BLAST of CSPI05G13720 vs. TrEMBL
Match: A0A0S3RL76_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G098000 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 6.3e-87
Identity = 218/322 (67.70%), Postives = 256/322 (79.50%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVY+RDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLP+ HSG TGE+ R GS+DTAR
Sbjct: 136 MGVYIRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPTTHSGSTGESTRHGSDDTAR 195

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKA+LSVSFGQRAPHRASTRDSSP+RRTLPS  ++R+ +DD+RRSPS RRSQSRE+
Sbjct: 196 RPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPS--HERNGSDDIRRSPSSRRSQSREY 255

Query: 121 PD---SRERSR--------DREFDRERSRDRDYDRDRDRGRDRDRDR--EHDRDREKYRD 180
           PD    RERSR        DR+ DRER RDRD +RDRDR RDRDR+R  E DRDRE+YRD
Sbjct: 256 PDRDRDRERSRSRDRDRDHDRDRDRERERDRDRERDRDRYRDRDRNREWERDRDRERYRD 315

Query: 181 RERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSR 240
           R+ DRD+ER++ R   RD+ER+RERSYDYDRR+ +++RES RD+     D G+RHYR+SR
Sbjct: 316 RDSDRDQERDRIR---RDKERERERSYDYDRRSKHTERESSRDY-----DNGSRHYRKSR 375

Query: 241 SRSRSRSRSRSLQ---THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGD--S 300
           SRSRSRSRS+S Q     HE   SP R G+  K +  SSNLAKLKD+YGD+ + KG+   
Sbjct: 376 SRSRSRSRSQSQQAGTARHESRSSPPRDGS--KRTSASSNLAKLKDMYGDLGDNKGEIRM 435

Query: 301 SKVNRRDGSGEEVIRLGGS-WK 304
            K+ R+D  GEEVIRLGGS WK
Sbjct: 436 EKIPRKDSGGEEVIRLGGSTWK 445

[Close]

BLAST of CSPI05G13720 vs. TrEMBL
Match: A0A0L9UWE1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g078200 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 6.3e-87
Identity = 218/322 (67.70%), Postives = 256/322 (79.50%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVY+RDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLP+ HSG TGE+ R GS+DTAR
Sbjct: 136 MGVYIRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPTTHSGSTGESTRHGSDDTAR 195

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKA+LSVSFGQRAPHRASTRDSSP+RRTLPS  ++R+ +DD+RRSPS RRSQSRE+
Sbjct: 196 RPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPS--HERNGSDDIRRSPSSRRSQSREY 255

Query: 121 PD---SRERSR--------DREFDRERSRDRDYDRDRDRGRDRDRDR--EHDRDREKYRD 180
           PD    RERSR        DR+ DRER RDRD +RDRDR RDRDR+R  E DRDRE+YRD
Sbjct: 256 PDRDRDRERSRSRDRDRDHDRDRDRERERDRDRERDRDRYRDRDRNREWERDRDRERYRD 315

Query: 181 RERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSR 240
           R+ DRD+ER++ R   RD+ER+RERSYDYDRR+ +++RES RD+     D G+RHYR+SR
Sbjct: 316 RDSDRDQERDRIR---RDKERERERSYDYDRRSKHTERESSRDY-----DNGSRHYRKSR 375

Query: 241 SRSRSRSRSRSLQ---THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGD--S 300
           SRSRSRSRS+S Q     HE   SP R G+  K +  SSNLAKLKD+YGD+ + KG+   
Sbjct: 376 SRSRSRSRSQSQQAGTARHESRSSPPRDGS--KRTSASSNLAKLKDMYGDLGDNKGEIRM 435

Query: 301 SKVNRRDGSGEEVIRLGGS-WK 304
            K+ R+D  GEEVIRLGGS WK
Sbjct: 436 EKIPRKDSGGEEVIRLGGSTWK 445

[Close]

BLAST of CSPI05G13720 vs. TrEMBL
Match: A0A0B2S496_GLYSO (Pre-mRNA-splicing factor 38B OS=Glycine soja GN=glysoja_016875 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-86
Identity = 216/317 (68.14%), Postives = 255/317 (80.44%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPS HSG TGET R GS+DTAR
Sbjct: 136 MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSTHSGSTGETTRHGSDDTAR 195

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKA+LSVSFGQRAPHRASTRDSSP+RRTLPS  ++++ +DD+RRSPS RRSQSRE+
Sbjct: 196 RPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPS--HEKNGSDDIRRSPSNRRSQSREY 255

Query: 121 PD-----SRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDRE 180
           PD      R+RS+ R+ DRER RDRD +RDRDR RDRDR+RE +RDR++ R+R RD D E
Sbjct: 256 PDRDRDRDRDRSQSRDRDRERDRDRDRERDRDRYRDRDRNREWERDRDRDRERYRDHDSE 315

Query: 181 REKARDRER---DRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRS 240
           R++ RDR R   +RER+RERSYDYD+R+ Y++RES RD+     D G+RHYRRSRSRSRS
Sbjct: 316 RDQDRDRIRRNNERERERERSYDYDKRSKYTERESSRDY-----DNGSRHYRRSRSRSRS 375

Query: 241 RSRSRSLQT---HHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSS--KVNR 300
           RSRSRSLQ     +E   SP R     K +  SSNLAKLKD+YGD+ + KGD++  ++ R
Sbjct: 376 RSRSRSLQAGTGRYESRSSPQR--EESKRTSASSNLAKLKDMYGDLGDSKGDANMERIPR 435

Query: 301 RDGSGEEVIRLGGS-WK 304
           +D  GEEVIRLGGS WK
Sbjct: 436 KDSGGEEVIRLGGSTWK 443

[Close]

BLAST of CSPI05G13720 vs. TrEMBL
Match: I1MBS7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G211600 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 9.1e-86
Identity = 215/317 (67.82%), Postives = 254/317 (80.13%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPS HSG TGET R GS+DTAR
Sbjct: 136 MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSTHSGSTGETTRHGSDDTAR 195

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKA+LSVSFGQRAPHRASTRDSSP+RRTLPS  ++++ +DD+RRSPS RRSQSRE+
Sbjct: 196 RPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPS--HEKNGSDDIRRSPSNRRSQSREY 255

Query: 121 PD-----SRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDRE 180
           PD      R+RS+ R+ DRER RDRD +RDRDR RDRDR+RE +RDR++ R+R RD D E
Sbjct: 256 PDRERDRDRDRSQSRDRDRERDRDRDRERDRDRYRDRDRNREWERDRDRDRERYRDHDSE 315

Query: 181 REKARDRER---DRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRS 240
           R++ RDR R   +RER+RER YDYD+R+ Y++RES RD+     D G+RHYRRSRSRSRS
Sbjct: 316 RDQDRDRIRRNNERERERERIYDYDKRSKYTERESSRDY-----DNGSRHYRRSRSRSRS 375

Query: 241 RSRSRSLQT---HHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSS--KVNR 300
           RSRSRSLQ     +E   SP R     K +  SSNLAKLKD+YGD+ + KGD++  ++ R
Sbjct: 376 RSRSRSLQAGTGWYESRSSPQR--EESKRTSASSNLAKLKDMYGDLGDSKGDANMERIPR 435

Query: 301 RDGSGEEVIRLGGS-WK 304
           +D  GEEVIRLGGS WK
Sbjct: 436 KDSGGEEVIRLGGSTWK 443

[Close]

BLAST of CSPI05G13720 vs. TAIR10
Match: AT5G37370.1 (AT5G37370.1 PRP38 family protein)

HSP 1 Score: 226.1 bits (575), Expect = 2.9e-59
Identity = 170/307 (55.37%), Postives = 203/307 (66.12%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVYVRDLLLG YYFDTLFPRIPVPV+RQ+VSNLEK+ LP+K SG TG+  R GSEDTAR
Sbjct: 137 MGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTAR 196

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLR-RSPSVRRSQSRE 120
           RPPSVKASLSVSFGQRAPHRASTR SSPVRR  P +  DR+  D+++ RSP  RRSQSR+
Sbjct: 197 RPPSVKASLSVSFGQRAPHRASTRGSSPVRRP-PPTGYDRNGGDEVQQRSP--RRSQSRD 256

Query: 121 HPDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKA 180
           +        DR+ DR+R R+R+ DR+R+RGRDR            YR+RERD   +R   
Sbjct: 257 YYS------DRDSDRQREREREKDRERERGRDR------------YRERERDYGNDRRSR 316

Query: 181 RDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSL 240
           R              DYD R+  +D E  R           RH RRSRSRSRSRSRS  +
Sbjct: 317 R--------------DYDSRSRRNDYEDDRS----------RHDRRSRSRSRSRSRSVQI 376

Query: 241 QTHHEREPSPARGGTTEKAS--VISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIR 300
               EREP+P R  + ++ S   ++SNLAKLKD+YGD S QK D     R+D S EEVI+
Sbjct: 377 ----EREPTPKRDSSNKEKSAVTVNSNLAKLKDLYGDASSQKRDEGFGTRKDSSSEEVIK 393

Query: 301 LGG-SWK 304
           LGG SW+
Sbjct: 437 LGGSSWR 393

[Close]

BLAST of CSPI05G13720 vs. TAIR10
Match: AT1G60900.1 (AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-08
Identity = 75/175 (42.86%), Postives = 101/175 (57.71%), Query Frame = 1


Query: 95  SSANDRDNNDDLRRSPSVRRSQSREHPD-SRERSRDREFDRERSRDRDYDRDRDRGRDRD 154
           S+ N  +N   L  SP    S+SRE  D  ++ S+  E D E  RD+D ++DRDR +DRD
Sbjct: 14  STENHNENYISLESSPFHEDSKSRESHDLKKDSSKISEKDNENGRDKDGNKDRDREKDRD 73

Query: 155 RDREHDRDREKYRDRERDRDREREKARD---RERDRERDRERSY-------DYDRRTHYS 214
           R++  DRDREK RDR+RDR+R +++ RD   R+R R+R RERS        D+ RR+   
Sbjct: 74  REKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHHRRSRDR 133

Query: 215 DRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQTHHEREPSPARGGTTEKA 259
           DR   RD     RD   RH RRSRSRSRSRS  RS   H  +    +R  +  ++
Sbjct: 134 DRRRSRD-----RDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSRSRS 183

[Close]

BLAST of CSPI05G13720 vs. NCBI nr
Match: gi|778702200|ref|XP_011655154.1| (PREDICTED: pre-mRNA-splicing factor 38B [Cucumis sativus])

HSP 1 Score: 535.0 bits (1377), Expect = 8.3e-149
Identity = 302/303 (99.67%), Postives = 303/303 (100.00%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR
Sbjct: 136 MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 195

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPS+RRSQSREH
Sbjct: 196 RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSIRRSQSREH 255

Query: 121 PDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKAR 180
           PDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKAR
Sbjct: 256 PDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKAR 315

Query: 181 DRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQ 240
           DRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQ
Sbjct: 316 DRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQ 375

Query: 241 THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGG 300
           THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGG
Sbjct: 376 THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGG 435

Query: 301 SWK 304
           SWK
Sbjct: 436 SWK 438

[Close]

BLAST of CSPI05G13720 vs. NCBI nr
Match: gi|700195754|gb|KGN50931.1| (hypothetical protein Csa_5G348070 [Cucumis sativus])

HSP 1 Score: 535.0 bits (1377), Expect = 8.3e-149
Identity = 302/303 (99.67%), Postives = 303/303 (100.00%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR
Sbjct: 61  MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 120

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPS+RRSQSREH
Sbjct: 121 RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSIRRSQSREH 180

Query: 121 PDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKAR 180
           PDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKAR
Sbjct: 181 PDSRERSRDREFDRERSRDRDYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKAR 240

Query: 181 DRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQ 240
           DRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQ
Sbjct: 241 DRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQ 300

Query: 241 THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGG 300
           THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGG
Sbjct: 301 THHEREPSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGG 360

Query: 301 SWK 304
           SWK
Sbjct: 361 SWK 363

[Close]

BLAST of CSPI05G13720 vs. NCBI nr
Match: gi|659126374|ref|XP_008463150.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X5 [Cucumis melo])

HSP 1 Score: 495.0 bits (1273), Expect = 9.6e-137
Identity = 294/333 (88.29%), Postives = 296/333 (88.89%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR
Sbjct: 136 MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 195

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSS NDRD NDDLRRSPS RRSQSREH
Sbjct: 196 RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREH 255

Query: 121 PDSRERSRDREF----------DR--------------------ERSRDRDYDRDRDRGR 180
           PDSRERSRDRE+          DR                    ERSRDRDYDRDRDRGR
Sbjct: 256 PDSRERSRDREYDRERSRDREYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGR 315

Query: 181 DRDRDREHDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRD 240
           DRDRDRE DRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRD
Sbjct: 316 DRDRDRELDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRD 375

Query: 241 FERSSRDGGTRHYRRSRSRSRSRSRSRSLQTHHEREPSPARGGTTEKASVISSNLAKLKD 300
           FERSSRDGGTRHYRRSRSRSRSRSR RSLQTHHERE SPARGGTTEKASVISSNLAKLKD
Sbjct: 376 FERSSRDGGTRHYRRSRSRSRSRSRGRSLQTHHEREQSPARGGTTEKASVISSNLAKLKD 435

Query: 301 IYGDVSEQKGDSSKVNRRDGSGEEVIRLGGSWK 304
           IYGDVSEQKGDSSK+NRRD SGEEVIRLGGSWK
Sbjct: 436 IYGDVSEQKGDSSKINRRDSSGEEVIRLGGSWK 468

[Close]

BLAST of CSPI05G13720 vs. NCBI nr
Match: gi|659126372|ref|XP_008463149.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X4 [Cucumis melo])

HSP 1 Score: 495.0 bits (1273), Expect = 9.6e-137
Identity = 294/333 (88.29%), Postives = 296/333 (88.89%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR
Sbjct: 136 MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 195

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSS NDRD NDDLRRSPS RRSQSREH
Sbjct: 196 RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREH 255

Query: 121 PDSRERSRDREF----------DR--------------------ERSRDRDYDRDRDRGR 180
           PDSRERSRDRE+          DR                    ERSRDRDYDRDRDRGR
Sbjct: 256 PDSRERSRDREYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGR 315

Query: 181 DRDRDREHDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRD 240
           DRDRDRE DRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRD
Sbjct: 316 DRDRDRELDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRD 375

Query: 241 FERSSRDGGTRHYRRSRSRSRSRSRSRSLQTHHEREPSPARGGTTEKASVISSNLAKLKD 300
           FERSSRDGGTRHYRRSRSRSRSRSR RSLQTHHERE SPARGGTTEKASVISSNLAKLKD
Sbjct: 376 FERSSRDGGTRHYRRSRSRSRSRSRGRSLQTHHEREQSPARGGTTEKASVISSNLAKLKD 435

Query: 301 IYGDVSEQKGDSSKVNRRDGSGEEVIRLGGSWK 304
           IYGDVSEQKGDSSK+NRRD SGEEVIRLGGSWK
Sbjct: 436 IYGDVSEQKGDSSKINRRDSSGEEVIRLGGSWK 468

[Close]

BLAST of CSPI05G13720 vs. NCBI nr
Match: gi|659126368|ref|XP_008463147.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X2 [Cucumis melo])

HSP 1 Score: 491.1 bits (1263), Expect = 1.4e-135
Identity = 294/343 (85.71%), Postives = 296/343 (86.30%), Query Frame = 1


Query: 1   MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 60
           MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR
Sbjct: 136 MGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTAR 195

Query: 61  RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDLRRSPSVRRSQSREH 120
           RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSS NDRD NDDLRRSPS RRSQSREH
Sbjct: 196 RPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREH 255

Query: 121 PDSRERSRDREF--------------------DR--------------------ERSRDR 180
           PDSRERSRDRE+                    DR                    ERSRDR
Sbjct: 256 PDSRERSRDREYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRERSRDR 315

Query: 181 DYDRDRDRGRDRDRDREHDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRT 240
           DYDRDRDRGRDRDRDRE DRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRT
Sbjct: 316 DYDRDRDRGRDRDRDRELDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRT 375

Query: 241 HYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQTHHEREPSPARGGTTEKASV 300
           HYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSR RSLQTHHERE SPARGGTTEKASV
Sbjct: 376 HYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRGRSLQTHHEREQSPARGGTTEKASV 435

Query: 301 ISSNLAKLKDIYGDVSEQKGDSSKVNRRDGSGEEVIRLGGSWK 304
           ISSNLAKLKDIYGDVSEQKGDSSK+NRRD SGEEVIRLGGSWK
Sbjct: 436 ISSNLAKLKDIYGDVSEQKGDSSKINRRDSSGEEVIRLGGSWK 478

The following BLAST results are available for this feature:

BLAST of CSPI05G13720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PR38B_MOUSE	3.1e-10	37.74	Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1	[more]
PR38B_RAT	2.6e-09	34.02	Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=1 SV=1	[more]
PR38B_HUMAN	9.9e-09	36.80	Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1	[more]
U2A2B_ORYSJ	2.9e-08	51.94	Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B ...	[more]
FRAY2_DICDI	3.8e-08	39.08	Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 ...	[more]

BLAST of CSPI05G13720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT86_CUCSA	5.8e-149	99.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G348070 PE=4 SV=1	[more]
A0A0S3RL76_PHAAN	6.3e-87	67.70	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G098000 PE=...	[more]
A0A0L9UWE1_PHAAN	6.3e-87	67.70	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g078200 PE=4 SV=1	[more]
A0A0B2S496_GLYSO	1.1e-86	68.14	Pre-mRNA-splicing factor 38B OS=Glycine soja GN=glysoja_016875 PE=4 SV=1	[more]
I1MBS7_SOYBN	9.1e-86	67.82	Uncharacterized protein OS=Glycine max GN=GLYMA_14G211600 PE=4 SV=1	[more]

BLAST of CSPI05G13720 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37370.1	2.9e-59	55.37	PRP38 family protein	[more]
AT1G60900.1	5.2e-08	42.86	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

BLAST of CSPI05G13720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778702200\|ref\|XP_011655154.1\|	8.3e-149	99.67	PREDICTED: pre-mRNA-splicing factor 38B [Cucumis sativus]	[more]
gi\|700195754\|gb\|KGN50931.1\|	8.3e-149	99.67	hypothetical protein Csa_5G348070 [Cucumis sativus]	[more]
gi\|659126374\|ref\|XP_008463150.1\|	9.6e-137	88.29	PREDICTED: pre-mRNA-splicing factor 38B isoform X5 [Cucumis melo]	[more]
gi\|659126372\|ref\|XP_008463149.1\|	9.6e-137	88.29	PREDICTED: pre-mRNA-splicing factor 38B isoform X4 [Cucumis melo]	[more]
gi\|659126368\|ref\|XP_008463147.1\|	1.4e-135	85.71	PREDICTED: pre-mRNA-splicing factor 38B isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005037	PRP38

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G13720.1	CSPI05G13720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 1..281 score: 3.6
None	No IPR available	PANTHER	PTHR23142:SF3	SUBFAMILY NOT NAMED	coord: 1..281 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G13720	Cla009142	Watermelon (97103) v1	cpiwmB422
CSPI05G13720	Csa5G348070	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G13720	MELO3C025080	Melon (DHL92) v3.5.1	cpimeB356
CSPI05G13720	ClCG01G008650	Watermelon (Charleston Gray)	cpiwcgB385
CSPI05G13720	Lsi09G009050	Bottle gourd (USVL1VR-Ls)	cpilsiB326
CSPI05G13720	MELO3C025080.2	Melon (DHL92) v3.6.1	cpimedB346
CSPI05G13720	CsaV3_5G020660	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G13720	Cla97C01G008890	Watermelon (97103) v2	cpiwmbB353
CSPI05G13720	Bhi12G001044	Wax gourd	cpiwgoB445
CSPI05G13720	Cucsa.014070	Cucumber (Gy14) v1	cgycpiB323
CSPI05G13720	CmaCh04G022770	Cucurbita maxima (Rimu)	cmacpiB746
CSPI05G13720	CmaCh15G007610	Cucurbita maxima (Rimu)	cmacpiB310
CSPI05G13720	CmoCh04G023810	Cucurbita moschata (Rifu)	cmocpiB742
CSPI05G13720	CmoCh15G007880	Cucurbita moschata (Rifu)	cmocpiB301
CSPI05G13720	Cp4.1LG13g05370	Cucurbita pepo (Zucchini)	cpecpiB182
CSPI05G13720	Cp4.1LG01g19710	Cucurbita pepo (Zucchini)	cpecpiB427
CSPI05G13720	Carg01445	Silver-seed gourd	carcpiB0864

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G13720	Wax gourd	cpiwgoB461
CSPI05G13720	Cucurbita maxima (Rimu)	cmacpiB299
CSPI05G13720	Cucurbita maxima (Rimu)	cmacpiB761
CSPI05G13720	Cucurbita moschata (Rifu)	cmocpiB290
CSPI05G13720	Cucurbita moschata (Rifu)	cmocpiB751
CSPI05G13720	Melon (DHL92) v3.5.1	cpimeB345
CSPI05G13720	Cucurbita pepo (Zucchini)	cpecpiB190
CSPI05G13720	Cucurbita pepo (Zucchini)	cpecpiB443
CSPI05G13720	Bottle gourd (USVL1VR-Ls)	cpilsiB331
CSPI05G13720	Melon (DHL92) v3.6.1	cpimedB335
CSPI05G13720	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G13720	Silver-seed gourd	carcpiB0866
CSPI05G13720	Watermelon (97103) v2	cpiwmbB364