CmoCh15G007880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G007880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pre-mRNA splicing factor PRP38 family protein
Location	Cmo_Chr15 : 3870204 .. 3873420 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGAAAACCTAGCTTGCATTGAAGCTCGCCTTAAGGGAAGCTTAACTTTTAGCCTGGAAAGCTCCTATGCCACCTTTAAAACATTGGTTTCACTGCTTCATCATCTGTCAGATAAGGTTGCATTAGGTGGCCTCCTTACTGCCTTCCCCTAGTATTTCCACCTTGTTACTTTGGATTTCGGTGTCCCCTAAGTGGTTGAGTGATGTTGGATGTGGTTACCCTTCTTTCTCTCATTCCTAATTAGCTAGTCCGTCCTGGGAGAAGGGAGTTTCTGGTTGTGGTCTTTAACCTCTATCGGAGTTTCTCTTGTTAATTGCTTTTCCATATTTCTTGGTCCCTTCTGAAGTCCTTTGCTTAGCAAGTTTTGAATGGGCTGGATGGTTATGATATCTATAAAGGTTGAAGTTCTTTTCTTGGTACATTTTGCATGGGAGAGTGAACATCTAAGTCTATATTTAGAGACATCTTTCCTTTGTGTTTTGCCAGCAATGGTGCGTTCTCCATAGGTGGTAAGAGGAAGATCCTCAACATTTTTTGTGAACTTCCTATTTTGCTTATTCCCTTTGGAGTTGGTGTTTATGGTCGTTTGGGATCGCTTTGGCTCGTAGCAAAGACTGCAACTTTATGATTGAGGAGGTGCTCTTGAACTTCCCATTTCCAGATACATGCAGCTTTCTGTGGCATGTTTTTTTATACTTTTGGAGGGTTTTTGGTCGGTCCATTTGCTGTTTGTACTCTCCTTTTCCCCTTCCTCAAATAACAGGAAAACAATTTTCTTCCTTACAAATCCATAATGTTTTGTTTGCATGTTTTCATTTTTAATGGATTTAAATAGTAACCTAAAGCTACAAAAAGCAGAATTGGAACTAACAGACTTGATGTGTTACAGGAATTTTCACCAGGATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGGTCAGGTTATATACCAACATTTCCCCTTTAGATATCATGATTCTTGGTTATGTCTTTCTTTTTTCTTTGTGTCACATACATGATAAATTTGTGTGTATATGGAGTTGCTGTTGGCATTTCTCTAGTGTTTAACTAATGGGAGCACTGCATTGTCGATTCATGGTTGGAAGACATTGTTAAGATTTATATATACAGTATACTAGAGTTCAAAGATTTTTTTTTTTTTTTTTTTGTCTTTTGTCTTTTGTCTTTTCTAATGCATCCAATATTTTCTTGACTCTCCTTATATAACCTTTTCTTTTAGTTTTATTTCCCACTTATGCACCTTGTAGGTAGATTAGAGGAAGTCCTTCACGAAATGTGTTAGCTTTTACATGTCTAAAGCGATACCTTTCAGAGATTTGCCCCTTCATGAACCTTCTTAATCGTGATGTGGAAAGAAAGGTTTTGGCTTAAGTTTCTAACTATTAATTTTCCTCGAAATATTTCGAATTTCAGATCATGAATGAATTTTTTTAGGAATGGTCTTGACATATTTAGATCAATCATTGTTTGGATTCAATTTTTTTTATTTTTGTAGTATATGATGGAAATAGATGAATGAAGTGTATAAGATGAATAAAATAAAATATGAAACCAAGGTGTTGGTTTTATCACATTGTTGTTATCTAAAAGTGTGATTAGTGACTTCACTAAATTGGATAATTGAGTTGATGATCTTTAAGCTTTTATTTTGTATGTCCTTTCAGCTTTTAAATGGAAGAAATTGTGATTCGTTGTGGCAAAAATTGTGTTTCTATGTTATCTGGCGGTGTTTATGTGATTCTGTTGTGTTGCCTACACGGCCGAATGATCATTATTTTCACATGTTCTAACTGGAACATATTAACCTCGTATCTTTCGTAGCTTCTTAAAAATACTTCAATTTAGATGTATTGTTATTTTTAAATCCCTCGTCTTTGTAGCTAAAAGTGCTCACATTTTGTTTGCCAATTGCAGTACTACTTCGATACTCTTTTCCCTCGTATTCCAGTTCCTGTCTTGCGACAAGTTGTAGCTAATCTCGAAAAGTTGAAGCTTCCAAGCAAACATTCAGGCGTGACAGGGGAAACCCATCGATTGGGGTCTGAAGACACTGCACGGCGACCACCTTCTGTAAAAGCTTCACTTTCAGTCTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCTCCAGTTCGTCGTACGCTACCAACATCAGCTATCGACAGAGATAACAACGATGATCTACGAAGATCTCCAAGCAGTCGCCGTAGCCAAAGTCGTGAACATCCAGATACTAGGGAGAGGAGCAGGGATAGAGATTATGACAGGGAGAGAAGCAGGGATAGAGATTATGACAGGGAAAGGAGCAGGGACAGAGAATATGACAGGGACAGGGACAGGGACAGGGGAAGGGATAGAGACCGAGAGCAAGAACATGATCGGGACAGAGAAAAGTATAGAGATCGGGAGAGGGACCGAGAAAGAGATAGAGAAAGAGAGAAAGCCAGGGATAGGGAGCGAGACAGAGAACGAAGTTATGATTATGATCGAAGGACTCATTACACTGATAGAGATGGTAGAAGGGACTTCGAAAGAAGTAGCCGTGATGGTGGTACAAGGCATTACCGAAGGAGTCGTAGCCGAAGTAGAAGCAGGAGCAGAAGTCGAAGTCTACAAACAGGAGTGAATGCCCATGGCCATCACGAACGAGAGCCAAGTCCTGCAAGGGGCAGAACCTCAGAGAAGACGTCGATCATATCGAGCAATCTGGCAAAACTAAAAGATATGTATGGTGATGTGAGCGAGCAGAAAGGAGGAGGAGGAGGAGGGGATTCAAGCAAAGAAAGAATTAACAGAAGGGATAGTAGCGGTGAAGAGGTGATCAGATTGGGTGGTTCCTGGAGATAGAAGAAAGAACTCCACTGTATTCAATACTCAACTCACCCATCTTTATCTTTTTATTTAGAAAACAAACACAATTTAGTTTTCTCTATTGGAAAAGGGAAGAACAAATGAAAAATGATGTATCTGTCACTTTGAGTTTTACAGTATTTTCATCATCTCTCTCCCAATCTACTTCTCATCAGTTGAATGCTCAGACTTAGGCATGCAACTATGGTGGCTGTGTATTAGAATTTAATTGACTTTGATTTGATTTCTCTGCTTGTTTTATGTTGGAACTTCTTTTCCTTCTAAGATATCCATATTTCTTTAAG

mRNA sequence

ATGACCGAAAACCTAGCTTGCATTGAAGCTCGCCTTAAGGGAAGCTTAACTTTTAGCCTGGAAAGCTCCTATGCCACCTTTAAAACATTGGTTTCACTGCTTCATCATCTGTCAGATAAGGAATTTTCACCAGGATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGTACTACTTCGATACTCTTTTCCCTCGTATTCCAGTTCCTGTCTTGCGACAAGTTGTAGCTAATCTCGAAAAGTTGAAGCTTCCAAGCAAACATTCAGGCGTGACAGGGGAAACCCATCGATTGGGGTCTGAAGACACTGCACGGCGACCACCTTCTGTAAAAGCTTCACTTTCAGTCTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCTCCAGTTCGTCGTACGCTACCAACATCAGCTATCGACAGAGATAACAACGATGATCTACGAAGATCTCCAAGCAGTCGCCGTAGCCAAAGTCGTGAACATCCAGATACTAGGGAGAGGAGCAGGGATAGAGATTATGACAGGGAGAGAAGCAGGGATAGAGATTATGACAGGGAAAGGAGCAGGGACAGAGAATATGACAGGGACAGGGACAGGGACAGGGGAAGGGATAGAGACCGAGAGCAAGAACATGATCGGGACAGAGAAAAGTATAGAGATCGGGAGAGGGACCGAGAAAGAGATAGAGAAAGAGAGAAAGCCAGGGATAGGGAGCGAGACAGAGAACGAAGTTATGATTATGATCGAAGGACTCATTACACTGATAGAGATGGTAGAAGGGACTTCGAAAGAAGTAGCCGTGATGGTGGTACAAGGCATTACCGAAGGAGTCGTAGCCGAAGTAGAAGCAGGAGCAGAAGTCGAAGTCTACAAACAGGAGTGAATGCCCATGGCCATCACGAACGAGAGCCAAGTCCTGCAAGGGGCAGAACCTCAGAGAAGACGTCGATCATATCGAGCAATCTGGCAAAACTAAAAGATATGTATGGTGATGTGAGCGAGCAGAAAGGAGGAGGAGGAGGAGGGGATTCAAGCAAAGAAAGAATTAACAGAAGGGATAGTAGCGGTGAAGAGGTGATCAGATTGGGTGGTTCCTGGAGATAGAAGAAAGAACTCCACTGTATTCAATACTCAACTCACCCATCTTTATCTTTTTATTTAGAAAACAAACACAATTTAGTTTTCTCTATTGGAAAAGGGAAGAACAAATGAAAAATGATGTATCTGTCACTTTGAGTTTTACAGTATTTTCATCATCTCTCTCCCAATCTACTTCTCATCAGTTGAATGCTCAGACTTAGGCATGCAACTATGGTGGCTGTGTATTAGAATTTAATTGACTTTGATTTGATTTCTCTGCTTGTTTTATGTTGGAACTTCTTTTCCTTCTAAGATATCCATATTTCTTTAAG

Coding sequence (CDS)

ATGACCGAAAACCTAGCTTGCATTGAAGCTCGCCTTAAGGGAAGCTTAACTTTTAGCCTGGAAAGCTCCTATGCCACCTTTAAAACATTGGTTTCACTGCTTCATCATCTGTCAGATAAGGAATTTTCACCAGGATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGTACTACTTCGATACTCTTTTCCCTCGTATTCCAGTTCCTGTCTTGCGACAAGTTGTAGCTAATCTCGAAAAGTTGAAGCTTCCAAGCAAACATTCAGGCGTGACAGGGGAAACCCATCGATTGGGGTCTGAAGACACTGCACGGCGACCACCTTCTGTAAAAGCTTCACTTTCAGTCTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCTCCAGTTCGTCGTACGCTACCAACATCAGCTATCGACAGAGATAACAACGATGATCTACGAAGATCTCCAAGCAGTCGCCGTAGCCAAAGTCGTGAACATCCAGATACTAGGGAGAGGAGCAGGGATAGAGATTATGACAGGGAGAGAAGCAGGGATAGAGATTATGACAGGGAAAGGAGCAGGGACAGAGAATATGACAGGGACAGGGACAGGGACAGGGGAAGGGATAGAGACCGAGAGCAAGAACATGATCGGGACAGAGAAAAGTATAGAGATCGGGAGAGGGACCGAGAAAGAGATAGAGAAAGAGAGAAAGCCAGGGATAGGGAGCGAGACAGAGAACGAAGTTATGATTATGATCGAAGGACTCATTACACTGATAGAGATGGTAGAAGGGACTTCGAAAGAAGTAGCCGTGATGGTGGTACAAGGCATTACCGAAGGAGTCGTAGCCGAAGTAGAAGCAGGAGCAGAAGTCGAAGTCTACAAACAGGAGTGAATGCCCATGGCCATCACGAACGAGAGCCAAGTCCTGCAAGGGGCAGAACCTCAGAGAAGACGTCGATCATATCGAGCAATCTGGCAAAACTAAAAGATATGTATGGTGATGTGAGCGAGCAGAAAGGAGGAGGAGGAGGAGGGGATTCAAGCAAAGAAAGAATTAACAGAAGGGATAGTAGCGGTGAAGAGGTGATCAGATTGGGTGGTTCCTGGAGATAG

Homology

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BLAST of CmoCh15G007880 vs. Swiss-Prot
Match: PR38B_HUMAN (Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-10
Identity = 110/342 (32.16%), Postives = 168/342 (49.12%), Query Frame = 1


Query: 32  SLLHHLSDKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKL 91
           S L    D +   G  G + T+G  +R  L    +F TLFPRIPVPV + +   ++    
Sbjct: 180 SFLDDEEDLDVKAGG-GCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPR 239

Query: 92  PSKHSGVTGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAID 151
             K  G  G    +      RR  S + SLS    +R+P R+ +R  S  R    +S+ D
Sbjct: 240 KIKKDGKEG-AEEIDRHVERRRSRSPRRSLSP---RRSPRRSRSR--SHHREGHGSSSFD 299

Query: 152 RDNNDDLRRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRD 211
           R+   +  R    R ++ RE    R RS DR  +R RSR R+  R RSR R+   DR RD
Sbjct: 300 RELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGDR-RD 359

Query: 212 RGRDRDREQEHDRDREKYRDRERDRERDREREKARDRERDRERSYDYDRRTHYTDRDGRR 271
           R R+R++E E  R R++  D+ER  ER++ERE++R+R +++    + + + H  D+D RR
Sbjct: 360 RDREREKENERGRRRDRDYDKERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRR 419

Query: 272 DFERSSRDGGTRHYRRSRSRSRS-RSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSIIS 331
             +        + + RSRSR R  RSRSRS   G  +    + + S  +  + EK++  S
Sbjct: 420 HRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRS 479

Query: 332 SNLAK------LKDMYGDVSEQKGGGGGGDSSKERINRRDSS 367
            + ++       K    + S  K        SKER ++RD S
Sbjct: 480 RSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHS 513

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BLAST of CmoCh15G007880 vs. Swiss-Prot
Match: PR38B_RAT (Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-09
Identity = 113/344 (32.85%), Postives = 163/344 (47.38%), Query Frame = 1


Query: 32  SLLHHLSDKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKL 91
           S L    D +   G  G + T+G  +R  L    +F TLFPRIPVPV + +   ++    
Sbjct: 180 SFLDDEEDLDVKAGG-GCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPR 239

Query: 92  PSKHSGVTGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAID 151
             K  G  G    +      RR  S + SLS    +R+P R+ +R  S  R    +S+ D
Sbjct: 240 KIKKDGKEG-VEEIDRHIERRRSRSPRRSLSP---RRSPRRSRSR--SHHRDGHGSSSFD 299

Query: 152 RDNNDDLRRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRD 211
           R+   +  R    R ++ RE    R RS DR  DR RSR R  +R RSR R  DR  DR 
Sbjct: 300 RELEREKERQRLEREAKEREKERRRSRSLDRGLDRRRSRSR--ERHRSRSRSRDRKGDR- 359

Query: 212 RGRDRDREQEHDRDREKYRDRERDRERDREREKARDRERDRERSY--DYDRRTHYTDRDG 271
           R RDR+RE+E++R R + RD ++DR  DRER++ R RER +E+    + + + H  D++ 
Sbjct: 360 RDRDREREKENERGRRRDRDYDKDRGNDRERDRERSRERSKEQRSRGEGEEKKHKEDKED 419

Query: 272 RRDFERSSRDGGTRHYRRSRSRSRS-RSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSI 331
           RR   R  +    + + RSRSR R  RSRSRS   G  +    + + S  +  + EK++ 
Sbjct: 420 RR--HRDDKKESKKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKDKASKHKNESKEKSN- 479

Query: 332 ISSNLAKLKDMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIR 373
                             + G  G   S E+  R  S   E  R
Sbjct: 480 ---------------KRSRSGSQGRTGSVEKRKREHSPSREKSR 495

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BLAST of CmoCh15G007880 vs. Swiss-Prot
Match: FRAY2_DICDI (Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-09
Identity = 96/263 (36.50%), Postives = 131/263 (49.81%), Query Frame = 1


Query: 86  LEKLKLPS--KHSGVTGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSS---- 145
           L K   PS  K +  T ++++  S  ++R     ++S S S    +   +S  +S     
Sbjct: 657 LSKPPSPSSDKENNSTSKSNKSKSRQSSRASSLSESSDSTSHTSSSDEHSSRYESDRKSY 716

Query: 146 ---PVRRTLPTSAIDRDNNDDLRRSPSS-RRSQSREHPDTRERSRDR-----DYDRERSR 205
                  +   S  DR+   D  RS  + + S+SR     RER RDR     D DRER R
Sbjct: 717 KKKKSSSSSSNSKRDRERERDRDRSNKTYKNSRSRNVSRDRERERDRHNRSRDRDRERER 776

Query: 206 DRDYDRERSRDREYDRDRDRDRGRDRDREQEHDRDREKYRDRERDRERDREREKARDRER 265
           +RD DRER RDR  DR RDR R R+RDR ++  RDR++ RDR RDR R+R+R+++RDR R
Sbjct: 777 ERDRDRERDRDRSRDRSRDRSRDRERDRSRDRSRDRDRSRDRSRDRSRERDRDRSRDRSR 836

Query: 266 DRERSYDYDRRTHYTDRDGRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGH 325
           DR RS D D R    DR       R SR   +R+  R RS    RSR RS      +   
Sbjct: 837 DRSRSRDSDSRDRSRDRSRSHSNRRRSRSRDSRNKSRDRSSDSDRSRDRSRDRDYKS--- 896

Query: 326 HEREPSPARGRTSEKTSIISSNL 334
             +    +RG +  K + I S L
Sbjct: 897 -SKYKKSSRGTSGRKNNKIQSKL 915

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BLAST of CmoCh15G007880 vs. Swiss-Prot
Match: PR38B_MOUSE (Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-08
Identity = 106/341 (31.09%), Postives = 160/341 (46.92%), Query Frame = 1


Query: 32  SLLHHLSDKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKL 91
           S L    D +   G  G + T+G  +R  L    +F TLFPRIPVPV + +   ++    
Sbjct: 181 SFLDDEEDLDVKAGG-GCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPR 240

Query: 92  PSKHSGVTGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAID 151
             K  G  G    +      RR  S + SLS    +R+P R+ +R  S  R    +S+ D
Sbjct: 241 KIKKDGKEG-IEEIDRHVERRRSRSPRRSLSP---RRSPRRSRSR--SHHREGHGSSSFD 300

Query: 152 RDNNDDLRRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRD 211
           R+   +  R    R ++ RE    R RS DR  DR RSR R+  R RSR R+   DR RD
Sbjct: 301 RELEREKERQRLEREAKEREKERRRSRSIDRGLDRRRSRSRERHRSRSRSRDRKGDR-RD 360

Query: 212 RGRDRDREQEHDRDREKYRDRERDRERDREREKARDRERDRERSYDYDRRTHYTDRDGRR 271
           R R+R++E E  R R++  D+ER  +R+R+RE++R+R +++    D + + H  D++ RR
Sbjct: 361 RDREREKENERGRRRDRDYDKERGSDRERDRERSRERSKEQRSRGDGEEKKHKEDKEDRR 420

Query: 272 DFERSSRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSIISS 331
              R  +    + + RSRSR R + RSRS   G  +    + + S  +  + EK +    
Sbjct: 421 --HRDDKKESKKKHSRSRSRER-KHRSRSRNAGKRSRSRSKDKSSRHKNESKEKAN---- 480

Query: 332 NLAKLKDMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIR 373
                          + G  G   S E+  R  S   E  R
Sbjct: 481 ------------KRSRSGSQGRTGSVEKRKREHSPSREKSR 494

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BLAST of CmoCh15G007880 vs. Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-07
Identity = 70/140 (50.00%), Postives = 93/140 (66.43%), Query Frame = 1


Query: 161 SPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRDRGRDRDREQ 220
           S S  +  SRE+   R+ SR R+ DRER RD+D DR+R RDR     RDRDRGRDRD+++
Sbjct: 38  SDSKSQHSSRENEKDRDSSRSREKDRERGRDKDRDRDRDRDR----GRDRDRGRDRDKDR 97

Query: 221 EHDRDREKYR-DRERDRERDREREKARDR-ERDRERSYDYD-RRTHYTDRDGRRDFERSS 280
           E ++DR+++  DR RDR   RE+E+ RDR + DR R+ DYD +R H  DR+ R      S
Sbjct: 98  EREKDRDRHHGDRHRDRSDRREKERTRDRDDDDRHRTRDYDQQREHAKDRESRHRHRSRS 157

Query: 281 RDGGTRHYRRSRSRSRSRSR 298
           R G + H  RSRSRSRS+S+
Sbjct: 158 R-GRSEHRSRSRSRSRSKSK 172

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BLAST of CmoCh15G007880 vs. TrEMBL
Match: A0A0A0KT86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G348070 PE=4 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 3.7e-137
Identity = 288/342 (84.21%), Postives = 308/342 (90.06%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           D+EFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLPSKHSGV
Sbjct: 47  DEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGV 106

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLP+SA DRDNNDDL
Sbjct: 107 TGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDL 166

Query: 159 RRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRDRGRDRDR 218
           RRSPS RRSQSREHPD+RERSRDR++DRERSRDRDY            DRDRDRGRDRDR
Sbjct: 167 RRSPSIRRSQSREHPDSRERSRDREFDRERSRDRDY------------DRDRDRGRDRDR 226

Query: 219 EQEHDRDREKYRDRERDRERDRE--REKARDRERDRERSYDYDRRTHYTDRDGRRDFERS 278
           ++EHDRDREKYRDRERDR+R+RE  R++ RDRERDRERSYDYDRRTHY+DR+ RRDFERS
Sbjct: 227 DREHDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERS 286

Query: 279 SRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSIISSNLAKL 338
           SRDGGTRHYRRSRSRSRSRSRSRSLQT      HHEREPSPARG T+EK S+ISSNLAKL
Sbjct: 287 SRDGGTRHYRRSRSRSRSRSRSRSLQT------HHEREPSPARGGTTEKASVISSNLAKL 346

Query: 339 KDMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGGSWR 379
           KD+YGDVSEQK     GDSSK  +NRRD SGEEVIRLGGSW+
Sbjct: 347 KDIYGDVSEQK-----GDSSK--VNRRDGSGEEVIRLGGSWK 363

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BLAST of CmoCh15G007880 vs. TrEMBL
Match: A0A0B2S496_GLYSO (Pre-mRNA-splicing factor 38B OS=Glycine soja GN=glysoja_016875 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 4.0e-99
Identity = 235/342 (68.71%), Postives = 280/342 (81.87%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           D+EFSPGS+GRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLPS HSG 
Sbjct: 122 DEEFSPGSNGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSTHSGS 181

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGET R GS+DTARRPPSVKA+LSVSFGQRAPHRASTRDSSP+RRTLP+   +++ +DD+
Sbjct: 182 TGETTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPSH--EKNGSDDI 241

Query: 159 RRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRDRGRDRDR 218
           RRSPS+RRSQSRE+PD   R RDRD DR +SRDRD +R+R RDRE DRDR RDR R+R+ 
Sbjct: 242 RRSPSNRRSQSREYPD---RDRDRDRDRSQSRDRDRERDRDRDRERDRDRYRDRDRNREW 301

Query: 219 EQEHDRDREKYRDRERDRERDRER-EKARDRERDRERSYDYDRRTHYTDRDGRRDFERSS 278
           E++ DRDRE+YRD + +R++DR+R  +  +RER+RERSYDYD+R+ YT+R+  RD+    
Sbjct: 302 ERDRDRDRERYRDHDSERDQDRDRIRRNNERERERERSYDYDKRSKYTERESSRDY---- 361

Query: 279 RDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSIISSNLAKLK 338
            D G+RHYRRSRSRSRSRSRSRSLQ G    G +E   SP R   S++TS  SSNLAKLK
Sbjct: 362 -DNGSRHYRRSRSRSRSRSRSRSLQAGT---GRYESRSSPQR-EESKRTS-ASSNLAKLK 421

Query: 339 DMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGGS-WR 379
           DMYGD+ + K     GD++ ERI R+DS GEEVIRLGGS W+
Sbjct: 422 DMYGDLGDSK-----GDANMERIPRKDSGGEEVIRLGGSTWK 443

[Close]

BLAST of CmoCh15G007880 vs. TrEMBL
Match: I1MBS7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G211600 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 3.4e-98
Identity = 234/342 (68.42%), Postives = 279/342 (81.58%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           D+EFSPGS+GRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLPS HSG 
Sbjct: 122 DEEFSPGSNGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSTHSGS 181

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGET R GS+DTARRPPSVKA+LSVSFGQRAPHRASTRDSSP+RRTLP+   +++ +DD+
Sbjct: 182 TGETTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPSH--EKNGSDDI 241

Query: 159 RRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRDRGRDRDR 218
           RRSPS+RRSQSRE+PD   R RDRD DR +SRDRD +R+R RDRE DRDR RDR R+R+ 
Sbjct: 242 RRSPSNRRSQSREYPD---RERDRDRDRSQSRDRDRERDRDRDRERDRDRYRDRDRNREW 301

Query: 219 EQEHDRDREKYRDRERDRERDRER-EKARDRERDRERSYDYDRRTHYTDRDGRRDFERSS 278
           E++ DRDRE+YRD + +R++DR+R  +  +RER+RER YDYD+R+ YT+R+  RD+    
Sbjct: 302 ERDRDRDRERYRDHDSERDQDRDRIRRNNERERERERIYDYDKRSKYTERESSRDY---- 361

Query: 279 RDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSIISSNLAKLK 338
            D G+RHYRRSRSRSRSRSRSRSLQ G    G +E   SP R   S++TS  SSNLAKLK
Sbjct: 362 -DNGSRHYRRSRSRSRSRSRSRSLQAGT---GWYESRSSPQR-EESKRTS-ASSNLAKLK 421

Query: 339 DMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGGS-WR 379
           DMYGD+ + K     GD++ ERI R+DS GEEVIRLGGS W+
Sbjct: 422 DMYGDLGDSK-----GDANMERIPRKDSGGEEVIRLGGSTWK 443

[Close]

BLAST of CmoCh15G007880 vs. TrEMBL
Match: A0A0L9UWE1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g078200 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.4e-96
Identity = 229/342 (66.96%), Postives = 274/342 (80.12%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           ++EFSPGS+GRMTTMGVY+RDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLP+ HSG 
Sbjct: 122 EEEFSPGSNGRMTTMGVYIRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPTTHSGS 181

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGE+ R GS+DTARRPPSVKA+LSVSFGQRAPHRASTRDSSP+RRTLP+   +R+ +DD+
Sbjct: 182 TGESTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPSH--ERNGSDDI 241

Query: 159 RRSPSSRRSQSREHPD-TRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRDRGRDRD 218
           RRSPSSRRSQSRE+PD  R+R R R  DR+R  DRD DRER RDR+ +RDRDR R RDR+
Sbjct: 242 RRSPSSRRSQSREYPDRDRDRERSRSRDRDRDHDRDRDRERERDRDRERDRDRYRDRDRN 301

Query: 219 REQEHDRDREKYRDRERDRERDREREKARDRERDRERSYDYDRRTHYTDRDGRRDFERSS 278
           RE E DRDRE+YRDR+ DR+++R+R + RD+ER+RERSYDYDRR+ +T+R+  RD+    
Sbjct: 302 REWERDRDRERYRDRDSDRDQERDRIR-RDKERERERSYDYDRRSKHTERESSRDY---- 361

Query: 279 RDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSIISSNLAKLK 338
            D G+RHYR+SRSRSRSRSRS+S Q G      HE   SP   R   K +  SSNLAKLK
Sbjct: 362 -DNGSRHYRKSRSRSRSRSRSQSQQAGT---ARHESRSSPP--RDGSKRTSASSNLAKLK 421

Query: 339 DMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGGS-WR 379
           DMYGD+ + K     G+   E+I R+DS GEEVIRLGGS W+
Sbjct: 422 DMYGDLGDNK-----GEIRMEKIPRKDSGGEEVIRLGGSTWK 445

[Close]

BLAST of CmoCh15G007880 vs. TrEMBL
Match: A0A0S3RL76_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G098000 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.4e-96
Identity = 229/342 (66.96%), Postives = 274/342 (80.12%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           ++EFSPGS+GRMTTMGVY+RDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLP+ HSG 
Sbjct: 122 EEEFSPGSNGRMTTMGVYIRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPTTHSGS 181

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGE+ R GS+DTARRPPSVKA+LSVSFGQRAPHRASTRDSSP+RRTLP+   +R+ +DD+
Sbjct: 182 TGESTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPSH--ERNGSDDI 241

Query: 159 RRSPSSRRSQSREHPD-TRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRDRGRDRD 218
           RRSPSSRRSQSRE+PD  R+R R R  DR+R  DRD DRER RDR+ +RDRDR R RDR+
Sbjct: 242 RRSPSSRRSQSREYPDRDRDRERSRSRDRDRDHDRDRDRERERDRDRERDRDRYRDRDRN 301

Query: 219 REQEHDRDREKYRDRERDRERDREREKARDRERDRERSYDYDRRTHYTDRDGRRDFERSS 278
           RE E DRDRE+YRDR+ DR+++R+R + RD+ER+RERSYDYDRR+ +T+R+  RD+    
Sbjct: 302 REWERDRDRERYRDRDSDRDQERDRIR-RDKERERERSYDYDRRSKHTERESSRDY---- 361

Query: 279 RDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSIISSNLAKLK 338
            D G+RHYR+SRSRSRSRSRS+S Q G      HE   SP   R   K +  SSNLAKLK
Sbjct: 362 -DNGSRHYRKSRSRSRSRSRSQSQQAGT---ARHESRSSPP--RDGSKRTSASSNLAKLK 421

Query: 339 DMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGGS-WR 379
           DMYGD+ + K     G+   E+I R+DS GEEVIRLGGS W+
Sbjct: 422 DMYGDLGDNK-----GEIRMEKIPRKDSGGEEVIRLGGSTWK 445

[Close]

BLAST of CmoCh15G007880 vs. TAIR10
Match: AT5G37370.1 (AT5G37370.1 PRP38 family protein)

HSP 1 Score: 243.4 bits (620), Expect = 2.2e-64
Identity = 183/345 (53.04%), Postives = 217/345 (62.90%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           D+EFSPGS+GRMTTMGVYVRDLLLG YYFDTLFPRIPVPV+RQ+V+NLEK+ LP+K SG 
Sbjct: 123 DEEFSPGSNGRMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGS 182

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRASTR SSPVRR  P +  DR+  D++
Sbjct: 183 TGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVRR-PPPTGYDRNGGDEV 242

Query: 159 RRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRDRGRDRDR 218
           +                           +RS        RS+ R+Y  DRD D       
Sbjct: 243 Q---------------------------QRS------PRRSQSRDYYSDRDSD------- 302

Query: 219 EQEHDRDREKYRDRERDRERDREREKARDRERDRERSYDYDRRTH--YTDRDGRRDFERS 278
                      R RER+RE+DRERE+ RDR R+RER Y  DRR+   Y  R  R D+E  
Sbjct: 303 -----------RQREREREKDRERERGRDRYRERERDYGNDRRSRRDYDSRSRRNDYE-- 362

Query: 279 SRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRTSEKTS--IISSNLA 338
             D  +RH RRSRSRSRSRSRS  +          EREP+P R  ++++ S   ++SNLA
Sbjct: 363 --DDRSRHDRRSRSRSRSRSRSVQI----------EREPTPKRDSSNKEKSAVTVNSNLA 393

Query: 339 KLKDMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGG-SWR 379
           KLKD+YGD S QK   G G        R+DSS EEVI+LGG SWR
Sbjct: 423 KLKDLYGDASSQKRDEGFG-------TRKDSSSEEVIKLGGSSWR 393

[Close]

BLAST of CmoCh15G007880 vs. TAIR10
Match: AT1G60900.1 (AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor)

HSP 1 Score: 49.3 bits (116), Expect = 6.1e-06
Identity = 74/184 (40.22%), Postives = 108/184 (58.70%), Query Frame = 1


Query: 149 AIDRDNNDD----LRRSPSSRRSQSREHPDTR-ERSRDRDYDRERSRDRDYDRERSRDRE 208
           AI  +N+++    L  SP    S+SRE  D + + S+  + D E  RD+D +++R  DRE
Sbjct: 12  AISTENHNENYISLESSPFHEDSKSRESHDLKKDSSKISEKDNENGRDKDGNKDR--DRE 71

Query: 209 YDRDRDRDRGRDRDREQEHDRDREKYRDRERDRE-RDREREKARDRERDRERSYDYDRRT 268
            DRDR++ R RDR++ ++ DRDRE+ +DR+RDR  RDR R+++R+R   R+   D D   
Sbjct: 72  KDRDREKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRD-DLDDDHHR 131

Query: 269 HYTDRDGRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRT 327
              DRD RR  +R   D   RH RRSRSRSRSRS  RS     +   H  R  S +R ++
Sbjct: 132 RSRDRDRRRSRDR---DREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSRSRSKS 189

[Close]

BLAST of CmoCh15G007880 vs. NCBI nr
Match: gi|659126372|ref|XP_008463149.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X4 [Cucumis melo])

HSP 1 Score: 500.7 bits (1288), Expect = 2.2e-138
Identity = 297/360 (82.50%), Postives = 317/360 (88.06%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           D+EFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLPSKHSGV
Sbjct: 122 DEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGV 181

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLP+S  DRD NDDL
Sbjct: 182 TGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDDL 241

Query: 159 RRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDR------------ 218
           RRSPS+RRSQSREHPD+RERSRDR+YDRERSRDRDYDRERSRDR+YDR            
Sbjct: 242 RRSPSNRRSQSREHPDSRERSRDREYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRER 301

Query: 219 ------DRDRDRGRDRDREQEHDRDREKYRDRERDRERDRE--REKARDRERDRERSYDY 278
                 DRDRDRGRDRDR++E DRDREKYRDRERDR+R+RE  R++ RDRERDRERSYDY
Sbjct: 302 SRDRDYDRDRDRGRDRDRDRELDRDREKYRDRERDRDREREKARDRERDRERDRERSYDY 361

Query: 279 DRRTHYTDRDGRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPA 338
           DRRTHY+DR+ RRDFERSSRDGGTRHYRRSRSRSRSRSR RSLQT      HHERE SPA
Sbjct: 362 DRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRGRSLQT------HHEREQSPA 421

Query: 339 RGRTSEKTSIISSNLAKLKDMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGGSWR 379
           RG T+EK S+ISSNLAKLKD+YGDVSEQK     GDSSK  INRRDSSGEEVIRLGGSW+
Sbjct: 422 RGGTTEKASVISSNLAKLKDIYGDVSEQK-----GDSSK--INRRDSSGEEVIRLGGSWK 468

[Close]

BLAST of CmoCh15G007880 vs. NCBI nr
Match: gi|659126374|ref|XP_008463150.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X5 [Cucumis melo])

HSP 1 Score: 499.2 bits (1284), Expect = 6.3e-138
Identity = 296/360 (82.22%), Postives = 317/360 (88.06%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           D+EFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLPSKHSGV
Sbjct: 122 DEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGV 181

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLP+S  DRD NDDL
Sbjct: 182 TGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDDL 241

Query: 159 RRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDR------------ 218
           RRSPS+RRSQSREHPD+RERSRDR+YDRERSRDR+YDRERSRDR+YDR            
Sbjct: 242 RRSPSNRRSQSREHPDSRERSRDREYDRERSRDREYDRERSRDRDYDRERSRDRDYDRER 301

Query: 219 ------DRDRDRGRDRDREQEHDRDREKYRDRERDRERDRE--REKARDRERDRERSYDY 278
                 DRDRDRGRDRDR++E DRDREKYRDRERDR+R+RE  R++ RDRERDRERSYDY
Sbjct: 302 SRDRDYDRDRDRGRDRDRDRELDRDREKYRDRERDRDREREKARDRERDRERDRERSYDY 361

Query: 279 DRRTHYTDRDGRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPA 338
           DRRTHY+DR+ RRDFERSSRDGGTRHYRRSRSRSRSRSR RSLQT      HHERE SPA
Sbjct: 362 DRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRGRSLQT------HHEREQSPA 421

Query: 339 RGRTSEKTSIISSNLAKLKDMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGGSWR 379
           RG T+EK S+ISSNLAKLKD+YGDVSEQK     GDSSK  INRRDSSGEEVIRLGGSW+
Sbjct: 422 RGGTTEKASVISSNLAKLKDIYGDVSEQK-----GDSSK--INRRDSSGEEVIRLGGSWK 468

[Close]

BLAST of CmoCh15G007880 vs. NCBI nr
Match: gi|778702200|ref|XP_011655154.1| (PREDICTED: pre-mRNA-splicing factor 38B [Cucumis sativus])

HSP 1 Score: 496.1 bits (1276), Expect = 5.3e-137
Identity = 288/342 (84.21%), Postives = 308/342 (90.06%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           D+EFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLPSKHSGV
Sbjct: 122 DEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGV 181

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLP+SA DRDNNDDL
Sbjct: 182 TGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDL 241

Query: 159 RRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRDRGRDRDR 218
           RRSPS RRSQSREHPD+RERSRDR++DRERSRDRDY            DRDRDRGRDRDR
Sbjct: 242 RRSPSIRRSQSREHPDSRERSRDREFDRERSRDRDY------------DRDRDRGRDRDR 301

Query: 219 EQEHDRDREKYRDRERDRERDRE--REKARDRERDRERSYDYDRRTHYTDRDGRRDFERS 278
           ++EHDRDREKYRDRERDR+R+RE  R++ RDRERDRERSYDYDRRTHY+DR+ RRDFERS
Sbjct: 302 DREHDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERS 361

Query: 279 SRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSIISSNLAKL 338
           SRDGGTRHYRRSRSRSRSRSRSRSLQT      HHEREPSPARG T+EK S+ISSNLAKL
Sbjct: 362 SRDGGTRHYRRSRSRSRSRSRSRSLQT------HHEREPSPARGGTTEKASVISSNLAKL 421

Query: 339 KDMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGGSWR 379
           KD+YGDVSEQK     GDSSK  +NRRD SGEEVIRLGGSW+
Sbjct: 422 KDIYGDVSEQK-----GDSSK--VNRRDGSGEEVIRLGGSWK 438

[Close]

BLAST of CmoCh15G007880 vs. NCBI nr
Match: gi|700195754|gb|KGN50931.1| (hypothetical protein Csa_5G348070 [Cucumis sativus])

HSP 1 Score: 496.1 bits (1276), Expect = 5.3e-137
Identity = 288/342 (84.21%), Postives = 308/342 (90.06%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           D+EFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLPSKHSGV
Sbjct: 47  DEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGV 106

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLP+SA DRDNNDDL
Sbjct: 107 TGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSANDRDNNDDL 166

Query: 159 RRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRDRDRDRGRDRDR 218
           RRSPS RRSQSREHPD+RERSRDR++DRERSRDRDY            DRDRDRGRDRDR
Sbjct: 167 RRSPSIRRSQSREHPDSRERSRDREFDRERSRDRDY------------DRDRDRGRDRDR 226

Query: 219 EQEHDRDREKYRDRERDRERDRE--REKARDRERDRERSYDYDRRTHYTDRDGRRDFERS 278
           ++EHDRDREKYRDRERDR+R+RE  R++ RDRERDRERSYDYDRRTHY+DR+ RRDFERS
Sbjct: 227 DREHDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERS 286

Query: 279 SRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAHGHHEREPSPARGRTSEKTSIISSNLAKL 338
           SRDGGTRHYRRSRSRSRSRSRSRSLQT      HHEREPSPARG T+EK S+ISSNLAKL
Sbjct: 287 SRDGGTRHYRRSRSRSRSRSRSRSLQT------HHEREPSPARGGTTEKASVISSNLAKL 346

Query: 339 KDMYGDVSEQKGGGGGGDSSKERINRRDSSGEEVIRLGGSWR 379
           KD+YGDVSEQK     GDSSK  +NRRD SGEEVIRLGGSW+
Sbjct: 347 KDIYGDVSEQK-----GDSSK--VNRRDGSGEEVIRLGGSWK 363

[Close]

BLAST of CmoCh15G007880 vs. NCBI nr
Match: gi|659126370|ref|XP_008463148.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X3 [Cucumis melo])

HSP 1 Score: 495.4 bits (1274), Expect = 9.1e-137
Identity = 296/370 (80.00%), Postives = 317/370 (85.68%), Query Frame = 1


Query: 39  DKEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSGV 98
           D+EFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVV+NLEKLKLPSKHSGV
Sbjct: 122 DEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSGV 181

Query: 99  TGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDDL 158
           TGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLP+S  DRD NDDL
Sbjct: 182 TGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDDL 241

Query: 159 RRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDR------------ 218
           RRSPS+RRSQSREHPD+RERSRDR+YDRERSRDR+YDRERSRDR+YDR            
Sbjct: 242 RRSPSNRRSQSREHPDSRERSRDREYDRERSRDREYDRERSRDRDYDRERSRDRDYDRER 301

Query: 219 ----------------DRDRDRGRDRDREQEHDRDREKYRDRERDRERDRE--REKARDR 278
                           DRDRDRGRDRDR++E DRDREKYRDRERDR+R+RE  R++ RDR
Sbjct: 302 SRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRDREKYRDRERDRDREREKARDRERDR 361

Query: 279 ERDRERSYDYDRRTHYTDRDGRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSLQTGVNAH 338
           ERDRERSYDYDRRTHY+DR+ RRDFERSSRDGGTRHYRRSRSRSRSRSR RSLQT     
Sbjct: 362 ERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRGRSLQT----- 421

Query: 339 GHHEREPSPARGRTSEKTSIISSNLAKLKDMYGDVSEQKGGGGGGDSSKERINRRDSSGE 379
            HHERE SPARG T+EK S+ISSNLAKLKD+YGDVSEQK     GDSSK  INRRDSSGE
Sbjct: 422 -HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVSEQK-----GDSSK--INRRDSSGE 478

The following BLAST results are available for this feature:

BLAST of CmoCh15G007880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PR38B_HUMAN	1.0e-10	32.16	Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1	[more]
PR38B_RAT	1.9e-09	32.85	Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=1 SV=1	[more]
FRAY2_DICDI	2.5e-09	36.50	Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 ...	[more]
PR38B_MOUSE	2.1e-08	31.09	Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1	[more]
U2A2B_NICPL	1.8e-07	50.00	Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=...	[more]

BLAST of CmoCh15G007880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT86_CUCSA	3.7e-137	84.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G348070 PE=4 SV=1	[more]
A0A0B2S496_GLYSO	4.0e-99	68.71	Pre-mRNA-splicing factor 38B OS=Glycine soja GN=glysoja_016875 PE=4 SV=1	[more]
I1MBS7_SOYBN	3.4e-98	68.42	Uncharacterized protein OS=Glycine max GN=GLYMA_14G211600 PE=4 SV=1	[more]
A0A0L9UWE1_PHAAN	1.4e-96	66.96	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g078200 PE=4 SV=1	[more]
A0A0S3RL76_PHAAN	1.4e-96	66.96	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G098000 PE=...	[more]

BLAST of CmoCh15G007880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37370.1	2.2e-64	53.04	PRP38 family protein	[more]
AT1G60900.1	6.1e-06	40.22	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

BLAST of CmoCh15G007880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126372\|ref\|XP_008463149.1\|	2.2e-138	82.50	PREDICTED: pre-mRNA-splicing factor 38B isoform X4 [Cucumis melo]	[more]
gi\|659126374\|ref\|XP_008463150.1\|	6.3e-138	82.22	PREDICTED: pre-mRNA-splicing factor 38B isoform X5 [Cucumis melo]	[more]
gi\|778702200\|ref\|XP_011655154.1\|	5.3e-137	84.21	PREDICTED: pre-mRNA-splicing factor 38B [Cucumis sativus]	[more]
gi\|700195754\|gb\|KGN50931.1\|	5.3e-137	84.21	hypothetical protein Csa_5G348070 [Cucumis sativus]	[more]
gi\|659126370\|ref\|XP_008463148.1\|	9.1e-137	80.00	PREDICTED: pre-mRNA-splicing factor 38B isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005037	PRP38
IPR024767	PRP38_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G007880.1	CmoCh15G007880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 169..347 score: 8.8E-77coord: 39..146 score: 8.8
IPR024767	Pre-mRNA-splicing factor 38, C-terminal	PFAM	PF12871	PRP38_assoc	coord: 99..189 score: 2.
None	No IPR available	PANTHER	PTHR23142:SF3	SUBFAMILY NOT NAMED	coord: 169..347 score: 8.8E-77coord: 39..146 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G007880	Csa5G348070	Cucumber (Chinese Long) v2	cmocuB292
CmoCh15G007880	MELO3C025080	Melon (DHL92) v3.5.1	cmomeB241
CmoCh15G007880	CSPI05G13720	Wild cucumber (PI 183967)	cmocpiB301

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G007880	Cucumber (Gy14) v2	cgybcmoB589
CmoCh15G007880	Melon (DHL92) v3.6.1	cmomedB272
CmoCh15G007880	Melon (DHL92) v3.6.1	cmomedB273
CmoCh15G007880	Silver-seed gourd	carcmoB0714
CmoCh15G007880	Silver-seed gourd	carcmoB1118
CmoCh15G007880	Cucumber (Chinese Long) v3	cmocucB0353
CmoCh15G007880	Watermelon (97103) v2	cmowmbB271
CmoCh15G007880	Wax gourd	cmowgoB0367
CmoCh15G007880	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G007880	Cucumber (Gy14) v1	cgycmoB0739
CmoCh15G007880	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G007880	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G007880	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G007880	Melon (DHL92) v3.5.1	cmomeB247
CmoCh15G007880	Watermelon (Charleston Gray)	cmowcgB248
CmoCh15G007880	Watermelon (97103) v1	cmowmB269
CmoCh15G007880	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G007880	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G007880	Bottle gourd (USVL1VR-Ls)	cmolsiB256