Cp4.1LG01g19710 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g19710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pre-mRNA-splicing factor 38B
Location	Cp4.1LG01 : 16893746 .. 16903503 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGGCGTATTACCATTTGGGTTTCTTAAATTTAATCCTGTGTATGAAAGATTTTGTGTGAAAATGGAGTTCCTGGATCCTAATTGTTTGGGTTTTTCAAACTTCAATTGTTATTGGAAGTTCTAGATGTAGTAAATGTTAAGCATCTAAATGAATAAACTAGGAAGGTTGTATTGAGTAGAATGTCAGTTGAAGGTAAGAAACAAGGTGTACTTAAGGACCTCCAACTTGATGATGGCATGGGTTGTTTTGTTCTATCAAAGAGGAGTCTTTTTCACCCCCTCAGATTATTTGAAGCGTCCTCGGGTATTGAGATTATTATCAATAGAAGTAATATTACCATTATCATCTAATCATCGAATAATTAGAAATATTTGCTGAATGGATTTTTCTGCAATTAGTGATTTATTGACTGGTCCATTATCAAGTAACCTGTACAAGTTTGGTAAGGGTTTTTTTTAAGCATAGCACACATTTTTGCAACTTTTGGATGTAGGCTTCAAGTAGGGATGTTCTAGTAACCCGCCGAACAACCCAACTCAAGTTCTAAGGATTGGGTCGGGTTATTTTTATGCATGATTGAAATAGTCATAAGAGTTGTAAATGAATGTAATCTGTGGAGGAAAATTCTGAACAACATAAGTTGATGAAATTGGACATCGAAATATTGTAGTGAAGGTTGAAGGCTTTTTCTGCTTTAAGATTTTGATAGCTAATAATAGTTGAAAACAAGAAGCGAATGAAGGCAGCCTTTCCTGGCTGCTGACTTGAGGAGGATGTCTAGCTTTTTTTTGCTAGCTTGCACCACTTGAAATATTTTTACACATCAGTTCAATGTCACTTGTGGAAAAAAGAAAAATGTTCTTTTGTAGGTGTCTTTCGTTGTTGGTTCCTTTCTTTTTGTATGCAGACCATGTATGTTTCTCATATGCTATCAGATTAGGGTGACTTAATTTGTGTTTGTCTTCTCCAGACTATATCTTCAGGCTTCCTGTTAAAAGTATCAAATTTTCTTTTCATATTATTTTTTAATTACTGAATTTAAATGTAGTATATTCTTGTCCCTGCAGGTAGATGTCTAGTTGATTTATAATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATTCCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACAGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGGTAGGTAGAATCCCTTTGACCCTTAATTATTATTAAATAATAATGAATTGACATGTTATATTCTTGAACTTTTGTTTTTACTCCTTTTGTGAATTCCATATTATTTATTCATTTTCTTTTGTAAATATATTATGGACATTAAGACTGAAAGCTTGCAGTGGGCATATTTTTAAAAATTAATATTCTTCATGTTGCATGTACTTTTACAATCTTTATTGGAACTTTGATTAATAGTGTAGAACTTGGGTCAAATATTGCTGTTGTAAATGGATTACTATGATAATTTAGTTAACTTAACTGGACGTAGATTTGTTAGTGTATTCTTGAAGGTTTCTGTTTCTATAGCATGAAATTTTCTTGTGGGCATTTTAGGAATAATTAATTCTTTCTTTTCATCGTATTTACGTTACAAAGCATTTCAGCTATATCTCTGTTTGTTAGTATGTAGTGATCCATAGATCTTTGAAGAATCTGCATTGCTATATGTTTCTGCTTTTGTTATGTTATATTTTTTAAAAAATAACTTTCTGTTGCTTTTCTTTTCTGATTGGTAGTTGTATATATGTGCTTCTAGATATTTAGTCCTCCCTCAACTGTGGGATGTTGAAGAAGCATCGTATTTTTGTTTGAATTTTGTTATTGTCACCTAGAATAGACTACTAATCTAAACTAGTATGCTTCTTCAAAATAGATTGGAGATTAGCTCTTGGTATATTTATGCGTTAGGCTGCTCCTTTCTAAGTTCTACCTTCATTCCATCTCAATTCTGTTCTGCCAGAACAGTATTGGTTCGGGATAATTGAATAAATAAATAAATAAATAAAAATAACATAAAGCTGCATGTTGTATTTTGATTTAATTATGAACATTCTTTCTCCATAATTTGCTTTCTTACCTTATTATTATGATGCCCTTAGTTGTCCGATGTTTAAGAAATTTTGGGTGTAGCTGTATGATTCGGTTCTGCTACCATTTGACGTTATTTCTTTAATTAATTTTTCCAGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTCTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGTATATGATACATATGGGTGCTTGTTTTTTGTTTTTATTATTATGAGAACTGGTGCTAAAGATAACAGTTAGCATGCATGTGTTTGGCTTAGAATTTTCCTTAATGTGACTGTAAGTTGTTTTTTGTCGTTTGTATCATTGTTTTCTGCTGCCTTCAATGTAATTGTATTGATAATTGATTAAGCACAGACCTATTTTCAATATTATAGAGAGGTCATATATGCTTGTGAAGAATGGTAGACATTCAAATTTAAAATAACGGCTGTTGATACTTACTAATCCAGTTATTACTCTGTTCTTTTAATTGACTTTCTACTGCAACCCCTCCCTTTGGAGAATGCATTTGTAACCTCCTTTTGTACTACAACGGATGCCTTGCCCCTTTGTATGTGAGGCCATTTTGGCTTGGTTGGTGCGTTTTGAATGAAGTTTCAACTGTTTCTTATCAAGTGAAGACGAATTTTGGCTTGGTTGGTACCAACACCCACCCTAGTTGAATTCTGATTTTGTTCTTTTGCGAGTGGAAGTGAAGATGAATACTGAAGCTCCTTTCTCTTACACTTTATTAGTTATACAAGTGGATCACTTCGTAAGAAACAGTAAAGAGAAGGTGTGGGCAGACACAGGACCTGATTTTTGTATGTTTTTCGTTAAGTTTGAGATCACTCTAACATGTAGAAGTAAAAGAATACTATTTTTCAAAGCTGGAATGGATGAGATTGCAAAGTTCCTTTGAGGAGTCTGCAAACAACTTCTACCAAATGACTCCCCACGAGTTATGATCTAAAAAAATTCAAAACTAGGATTAAAGCTGTAACAACCCAAGCCCAAGCTCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCTTTCCAAGCTTCCCTTCAAGGTTCATCCACTAGGGTGATTAAAGCTGTAACAACCCAAGCCCAAGCTCACTGCTAGCAGATATTGTTCTCTTTGGGCTTTCCTTTCCAAGCTTCCCTTCAAGGTTCATCCACTAGGGAGATTAAAGCTGTAACAACCCAAGCCCAAGCTCACTGCTAGCAGATATTGTTCTCTTTGGGCTTTCCTTTCCAAGCTTCCCTTCAAGGTTCATCCACTAGGGAGATTAAAGCTGTAACAACCCAAGCCCAAGCTCACTGCTAGCAGATATTGTTCTCTTTGGGCTTTCCTTTCCAAGCTTCCCTTCAAGGTTCATCCACTAGGGAGAAGTTTCACACCCTTATAAGGGATGTTTTGTTCCCCTCTCCAACTGGTGTGGGATCAATCCACCCTCCTCGAGGGGCCCAGCGTCCTTACTGGCACACTGCCTGGTGTCTGGTTCGAATACCATTTGTAACAGCCCAAGCCCACTGCTAGCAGATATTGTCCTTTTTAGGTTTCCCTTTTTGGGCTTCCCTCAAGGTTTTAAAACGCATCCACTAGGGAGAGTTTTCCACACCCTTATAGGGAGTGCTCTATTCCCCTGTCCAACCAATGTGGGATCTCACAAAAGCTTTCCCCTGATTGAAACATGGTTAATGTCCTCTCACAAACACATTTGTTGTTTTAGGAAATTACCAAGTTGAGTTTTATTGATCTTGTATTGGTGTTGGTTCTTATAAGACTGAGACAAAATAAATATTCGATATCTTCTTGGGTGCTTTTGATTTTGAACGAAGACTAGTGAATTATTTAGTAAGGACGATACAAGTTTTGCACAGCTCCAATTGCAAGTAAATAAATGAGAGGGTTAAACTTCCACCCTCCCTTTGAATTTATTTCTTGGACCAAAATCTCTAAGGAATTCATGAAGTTCAAGAAGATATGGCCACTTGCCATCTGGTTACCTCCCTTGTTCAGCCAACTCCTAAATCTTATATACCAAAGATGATTTAGAAATTTAATACTTTGTTGGAACATATGTTGCATGTTAGAGAGGTTTGAGATCCCATTTTTTGATCTGGCTATGTTTTTTTCACTATTACTAACAAAAGCGTCTCCAAGGGAGAAGTGATTCGCTTACCGGTTGCAAAGTATGGGGGGCGACCATGAGATTGAAGTCCCATCCTTCCATATGAAATTTTTTTTGGTCTAGTTGTTACTATCTCAAAGGTGAGAGCTTATGTTCAAAGTGGACAATATCATATCATTGTGGAAGTTCGTTGTTCCCAACCATTGGTATCAAAGCCCAATTTTAGAATTCTGTTGATTACTTACATCGTGATCTGTAAAGAGTTGCCCATGATGGAGCTGTAAACCCTCGTCACTTCCTGGTATTAGCTGTAGATCATATGATGATTCACTGTTATTGACTTGATTGATTATAATATGTGAACTATGCATTTGTAATTTAAAATAGAGAATAATACAGGCTGGATTAGGAATTTACAATATAGTAAATTGTAGGAACTGAAAGGAAAAATGATGTCCTAACTGGGAAGAGGATGGGGAAGGAGGCAGTCGAAGTGGCCTACAAGGGCATAAAAAGACCTAGCTTTAGAAGCCCCACCCCTGGTGCAGTTAGTAAATGCAACTATGAATTCAGCGATAGGGGTGGACAATAGGGTGCAAACCCAAATGCTCCAAGAATGCCAGACATTGCTGTAATGATGGGAGTGATGCAACCCCTAACACAAATGACTGGACAAATGGTTCCTGAACCTAAATCTTGTGCAAAATGTTGGGTTGGGCTAATGGTTCCTGAACCTAAATCTTGTGCAAAATGTTGGGTAGGTATCCCAACCCAACAATGACAATGTCAACACGATACAGGAAAGCAAGTGTCTTCAGGGACTTCAAAATGATGGGATCTTGAAGTGTTCAAAGTGGTAGCCGAACTGTGGATGTCTTTATTGACGAGATTTTTAGGTGCATGAAGTGTTCGAAAGGACATAGGTCGAGTTGTGCCTTTCATGTTGTGTAGTGATGCTTAACTATGATGGCAATTAGCCTCCACAGTGATTGTTGCGGGCGAAGACCAAATCACGTCAATTTAGTTTAAAGAGGCATTCCTTTGGAAATACTTCAAATTGGTGGTGTGATACAAGAAACAATGAGAATTTTTTAGTATAGAGGAAGGAGACAGATCGATAGATGAGTATGAGTGTGTCTTGGTTGGGCTGGGCAAGGAGAATTTTTTAGTATAGAGCAAGTAGATGAGTATGAGAAAGGAGACACTTGAGGATCTCATCATTTGAAGTACTTGCTCTCTAATGTCGTGTTGACATTGCCCTGGTTGGGCTAGGCCACTTGCCTAGCATTTTGCACTAAATTTGGGGTCGTTTGTGAGGATTGCATCACTCCTATCATTGTAGCAATGTTTGACATTCCTGGAGCGTTTTGGGTTTGCACCTTGTTGTCTCGGTGGGGCTTCCAAAATGGGGTCCTTTTGTTACCTCGTAGGCCTTCTTCGACTACCTGTCATTCTTTGTCCTCTTTTCAGCCGGAAGATCATTTTGATTCTTAGTCTGCAATTTGCCATATAAATTCACAAGTGGGTTTAACAAACATGCTTTATTCTCTATTTTATTTTAAATTACAAATGCGTATCACTTCACTTATTATAATGGTTGTCTAAACTGCCGTCTTTCTTATTAATTTTTAGAGAATTATAGAAAAGGTAACTAAATCTAAATTAAATCTCTAGATATTGATACTAGGTAGCTAAATCTAAATAATAATACCTAGATATCAAGTAACTAAATTTAAATAAATCCAAGATAAATTGGGGAGGTCAACCACTTCGAGATTACACAAATTTCCTTCGACACTCCCTTCAAGCTAAATATCCTTCAACACTCCCCCTGAGTTTGAGTAATAGATTTATTTTTCTCAACTTAAGGGGGAGCGACAATGAATGATATCTATTAGTCAACTTGGAGGAGAGTGTAGAAGGATATTTGTGTGATTAGTTGGCCTGCTTAATGTATCTGGTTGGATTTATTTAGATTTAGTTACCTAATATCTTGTGATTATTATTTAGATTTAGTTAACTAGTATCTAGGGACTATTATTATTATTTAGATTCACTGTTACCTAGTATTTAGGGTATTCAGATTATCTAAAGATTTAGATTTAGTTAATCTTTCTCCTTTATAAAAGGGACATATAATTCTGACAACCATCTAATTTAGACTTGCAACAATAATCAATCAAAATAATTCTAACAGTGAATCATCATACGACCTACAGCTAGGTTTATAGCTTGGTCATGGGCAACTCTCTATAGCTTGTATGTAGTCACAAAGTCTAAAAACTAAGCTATGATACCAACGGTTAGGGACAACGGATCTTCACAATAGTATGATGTTGTCTACTTAATGTTCTAATTTCTTTGCTTTTGGTTCCCCATTTTAAAAAAAGGTTATCTTGACTTCATTTGCATTTTAGTTCCGATGCCAATATTGCAGAGACTCGTGTACCTTGGCTTTTTATCCATTTATGTGTGTACTTCTATCTTAACTTTATAGAAGAGCTTCATGTTCTTTTGTGTTGATTTACTTGGAAGTTGTGGCATATTTGTGTTTCAGCTCTTGGATTCCTTCTATTTCCTCCCAAGTCAACGGGAGATTTTATTTAAGTTCCAAGTCTTCGGACCCTCTGTATAAAATTATTGCTTACCTATGCCAATTGTATCTTAGGCACTTTTTTTTTAAGATACAGAAAGAGAGATGTAGATGGATTTTAAGGATAGGGATGGTGTGGGTTAAGTAGGAATTAGAAGTACCTACATATCGACTACCTGTCATGCACATACATTTCATTTTATGCCAAGTGTCTCTGTCAGACATAGATACGTCTGGACACACTCAAAACACATGTCGACATACTATTTTACGTGTCTTATATACATATATATATTATGTACATCCAATAATTTAAAAGGAACTAACAGACTGTGTTTCAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGGTCAGGTTATACACCAACATTTCCCTTCAAATATCATGTTGTTGGGTTATATTTTTCTTGTTTCTTTTTAACGTCTTTGCCTCAAAAACTTGATAAATTGTGTGTATATGTACAGTTGGTTTGTGAATCTTGTGACAACCTGCTGTTGACATTGCTCTATGATCTAACCATGGAATGAAAATGCTTCTTTGTTAGAGCTTTTTTTGTTGTTTCTGGGAACTGATATCCTGTATAAGCTCTGTGCACATTGCAGATCCCGGATGTTACTCTGTCGGGTTCGAAGATTAAGAATTAAATATATATATATATACACAGTATAATAGAGTCGAAGACTCTCACTAAGAGATGAGGAGGTGCAAAAAAGATCAGGAAAAGAAGAACTACCGGATAACGTAACCTCCTCCCTCCCCCTTTCAACTTATTAGGAAATTCTCTGTCCATTAAAACATCTCGTATATTGTCGATTTATCATGGTGACTCAATGCCATGTTCTCTGTTTTTAGAAGGTACTTCTTAGCTTTGAAGGCATGCACGTGCAAAGTGAAGTTGAATTTACAATGTGCCTTTGGTGTCTTGTTCAGTTAGTAGTATTGTCCATTTTTTTGTTTGCTTTTTCTGATTCATTCAAGACTTTTCTTTTAGGTAGATTGGAGGGGACCTTTGACCTAAAGTATCGGTTGTGTTACCTTTTACCTGTCAAAAGATATACCTATTAGAGCTGCCCCTTCATGAACTTTCTTAACTATTCATTCTTGTCACATTATTTCAAGGAATGTTCTTGAAATAATTGAATAAATTCGTTGTTTGGATTTAATTGTTTCTGTTATAGTGGTGAAAAGAGATGAATCAAGTGTATAAGATGGATAGAATGCGTGTAATTAGTGACTTCACTAAATTTGATGATTGAGGAGAGGAATGGAGACTAAATTTGGAGGTGGAAGTGATTTAAATCATATGAAGAACACTCTCTCTGTTCACAACGAATGGAGACTAGAAGGAACAAACTAAAGTGGTTTGTGTATTAATGCTTTATCAGTACAAAGCTGATTAAATCCTGATATCATATCTATATATAGGTTTGCATTTGGCTAGAGAGGATTTCACTTTTGGTTGGCAGTCTTTGTGTTCCAAATGTTCTATATTGGTATTAAGTGATTGTATTGTGTTAGCCATTGAATCCTTGTATTTGTAGTTTGAAAATACTCTCATTTTGTTTTCCCATTGCAGTATTACTTCGATACCCTTTTCCCTCGTATTCCAGTTTCTGTCTTGCGGCAAGTTGCAGCTAATCTTGAAAAGTTGAAGCTTCCCAGCAAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGATACCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAAGGATGATCTACAAAGATCTCCAAGCAGTCGTCATCCTGATAACAGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGGTAGGAAGAGGAGCAGGGATAGTAGGGGAAAGGATAGGGACAGAGATCGTGATCGAGACAGAGAGAGGTATAGAAATCGGGAGAGGGATCGAGATAGAGATAGAGAAAGAGAGAAAGGTAGGGGTAGAGATAGGGAGAGGGAGCGAGACAGAGAACGAAGTTATGATTATGATCGGAGGACTCATTATGCTGATAGTAGAAGGGACTACAAAAGGAGTAGTCGTGATAGTGTCACCCGGCATTACCGAAGGAGTCGGAGCCGAAGTAGGAGCAGGAGCAGAAGTCAAAGTTTACTACAAACAGGGAATGATGGCTACCACAAGCGAGAGGCAAGTCCTGTAAGAGGTGGGACTACAGAGAAGACGTCTATTAACCTGGCAAAACTCAAAGATATTTATGGCGATGTGAGGGAGGAGAAAGGGGATTTGAGCAAAGAAAGGTTTAATAATAGAAGGGATAGCAGTGGTGAAGAGGTGATTAGATTGGGAGGTTCCTGGAAATAGTGAGTGATGATATGCTCTAATACAACAAGTTCACTACTCTGTTCAATCTTGTCACTTGAGTTTTTAGTATTCATCTCTCCCAAATCAATCTATTTCATCAGTTGAATGCCCGGACTTGGGCTAAATGTAATACAACCATGTGGTGGTGTGTATAAGATCTTTCACGAAACATTCTTTGAAGGTGTGAAAATTTCTCGCTATTACATAATTAGCCAAAACGAATAAT

mRNA sequence

AGAAGGCGTATTACCATTTGGGTTTCTTAAATTTAATCCTGTGTATGAAAGATTTTGTGTGAAAATGGAGTTCCTGGATCCTAATTGTTTGGGTTTTTCAAACTTCAATTGTTATTGGAAGTTCTAGATGTAGTAAATGTTAAGCATCTAAATGAATAAACTAGGAAGGTTGTATTGAGTAGAATGTCAGTTGAAGGTAAGAAACAAGGTGTACTTAAGGACCTCCAACTTGATGATGGCATGGGTTGTTTTGTTCTATCAAAGAGGAGTCTTTTTCACCCCCTCAGATTATTTGAAGCGTCCTCGGGTAGATGTCTAGTTGATTTATAATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATTCCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACAGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTCTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGAGTCGAAGACTCTCACTAAGAGATGAGGAGGTGCAAAAAAGATCAGGAAAAGAAGAACTACCGGATAACTATTACTTCGATACCCTTTTCCCTCGTATTCCAGTTTCTGTCTTGCGGCAAGTTGCAGCTAATCTTGAAAAGTTGAAGCTTCCCAGCAAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGATACCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAAGGATGATCTACAAAGATCTCCAAGCAGTCGTCATCCTGATAACAGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGGTAGGAAGAGGAGCAGGGATAGTAGGGGAAAGGATAGGGACAGAGATCGTGATCGAGACAGAGAGAGGTATAGAAATCGGGAGAGGGATCGAGATAGAGATAGAGAAAGAGAGAAAGGTAGGGGTAGAGATAGGGAGAGGGAGCGAGACAGAGAACGAAGTTATGATTATGATCGGAGGACTCATTATGCTGATAGTAGAAGGGACTACAAAAGGAGTAGTCGTGATAGTGTCACCCGGCATTACCGAAGGAGTCGGAGCCGAAGTAGGAGCAGGAGCAGAAGTCAAAGTTTACTACAAACAGGGAATGATGGCTACCACAAGCGAGAGGCAAGTCCTGTAAGAGGTGGGACTACAGAGAAGACGTCTATTAACCTGGCAAAACTCAAAGATATTTATGGCGATGTGAGGGAGGAGAAAGGGGATTTGAGCAAAGAAAGGTTTAATAATAGAAGGGATAGCAGTGGTGAAGAGGTGATTAGATTGGGAGGTTCCTGGAAATAGTGAGTGATGATATGCTCTAATACAACAAGTTCACTACTCTGTTCAATCTTGTCACTTGAGTTTTTAGTATTCATCTCTCCCAAATCAATCTATTTCATCAGTTGAATGCCCGGACTTGGGCTAAATGTAATACAACCATGTGGTGGTGTGTATAAGATCTTTCACGAAACATTCTTTGAAGGTGTGAAAATTTCTCGCTATTACATAATTAGCCAAAACGAATAAT

Coding sequence (CDS)

ATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATTCCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACAGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTCTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGAGTCGAAGACTCTCACTAAGAGATGAGGAGGTGCAAAAAAGATCAGGAAAAGAAGAACTACCGGATAACTATTACTTCGATACCCTTTTCCCTCGTATTCCAGTTTCTGTCTTGCGGCAAGTTGCAGCTAATCTTGAAAAGTTGAAGCTTCCCAGCAAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGATACCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAAGGATGATCTACAAAGATCTCCAAGCAGTCGTCATCCTGATAACAGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGGTAGGAAGAGGAGCAGGGATAGTAGGGGAAAGGATAGGGACAGAGATCGTGATCGAGACAGAGAGAGGTATAGAAATCGGGAGAGGGATCGAGATAGAGATAGAGAAAGAGAGAAAGGTAGGGGTAGAGATAGGGAGAGGGAGCGAGACAGAGAACGAAGTTATGATTATGATCGGAGGACTCATTATGCTGATAGTAGAAGGGACTACAAAAGGAGTAGTCGTGATAGTGTCACCCGGCATTACCGAAGGAGTCGGAGCCGAAGTAGGAGCAGGAGCAGAAGTCAAAGTTTACTACAAACAGGGAATGATGGCTACCACAAGCGAGAGGCAAGTCCTGTAAGAGGTGGGACTACAGAGAAGACGTCTATTAACCTGGCAAAACTCAAAGATATTTATGGCGATGTGAGGGAGGAGAAAGGGGATTTGAGCAAAGAAAGGTTTAATAATAGAAGGGATAGCAGTGGTGAAGAGGTGATTAGATTGGGAGGTTCCTGGAAATAG

Protein sequence

MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKDEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYADSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK

Homology

[Close]

BLAST of Cp4.1LG01g19710 vs. Swiss-Prot
Match: PR38B_MOUSE (Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-43
Identity = 178/503 (35.39%), Postives = 242/503 (48.11%), Query Frame = 1


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTFHEVVDEIYNQVDHVEPW---------MTGNCRGP- 73
           L  ++  NILSS YFK +LY LKT+HEVVDEIY +V HVEPW          TG C G  
Sbjct: 59  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118

Query: 74  --------STAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 178

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYF 193
           FE ++ DEE+   ++ G  + T+G  +R  L                   K E     +F
Sbjct: 179 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLT------------------KLE-----WF 238

Query: 194 DTLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQ 253
            TLFPRIPV V + +   ++      K  G  G    I      RR  S + SLS    +
Sbjct: 239 STLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEG-IEEIDRHVERRRSRSPRRSLS---PR 298

Query: 254 RAPHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDR--------DHD 313
           R+P R+ +R  S  R     S  DR+ + + +R    R    RE+ R R        D  
Sbjct: 299 RSPRRSRSR--SHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLDRR 358

Query: 314 RERSSDRDHGRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDR 373
           R RS +R   R RSRD +G  RDRDR+R++E  R R RDRD D+ER   R RDRER R+R
Sbjct: 359 RSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGSDRERDRERSRER 418

Query: 374 ERSY-------------DYDRRTHYADSRRDYKRSSR----------------------- 433
            +               D + R H  D +   K+ SR                       
Sbjct: 419 SKEQRSRGDGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKHRSRSRNAGKRSRSRS 478

Query: 434 -DSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSINLAKLKDIYG 452
            D  +RH   S+ ++  RSRS S  +TG+    KRE SP R  + +++       K  + 
Sbjct: 479 KDKSSRHKNESKEKANKRSRSGSQGRTGSVEKRKREHSPSREKSRKRSRSQDRSHKREHN 527

[Close]

BLAST of Cp4.1LG01g19710 vs. Swiss-Prot
Match: PR38B_RAT (Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-43
Identity = 176/485 (36.29%), Postives = 235/485 (48.45%), Query Frame = 1


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTFHEVVDEIYNQVDHVEPW---------MTGNCRGP- 73
           L  ++  NILSS YFK +LY LKT+HEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  --------STAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYF 193
           FE ++ DEE+   ++ G  + T+G  +R  L                   K E     +F
Sbjct: 178 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLT------------------KLE-----WF 237

Query: 194 DTLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQ 253
            TLFPRIPV V + +   ++      K  G  G    I      RR  S + SLS    +
Sbjct: 238 STLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEG-VEEIDRHIERRRSRSPRRSLS---PR 297

Query: 254 RAPHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDR--------DHD 313
           R+P R+ +R  S  R     S  DR+ + + +R    R    RE+ R R        D  
Sbjct: 298 RSPRRSRSR--SHHRDGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSLDRGLDRR 357

Query: 314 RERSSDRDHGRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDR 373
           R RS +R   R RSRD +G  RDRDR+R++E  R R RDRD D++R   R RDRER R+R
Sbjct: 358 RSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKDRGNDRERDRERSRER 417

Query: 374 ERSY-------------DYDRRTHYADSRRDYKRSSRDSVTRHYRRSRSRS-----RSRS 433
            +               D + R H  D +   K+ SR        RSRSRS     RSRS
Sbjct: 418 SKEQRSRGEGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKHRSRSRSRNAGKRSRS 477

Query: 434 RSQSLLQTGNDGYHKREASPVRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRD 453
           RS+       +   ++     R G+  +T           G V + K + S  R  +R+ 
Sbjct: 478 RSKDKASKHKNESKEKSNKRSRSGSQGRT-----------GSVEKRKREHSPSREKSRKR 502

[Close]

BLAST of Cp4.1LG01g19710 vs. Swiss-Prot
Match: PR38B_HUMAN (Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.5e-43
Identity = 181/491 (36.86%), Postives = 243/491 (49.49%), Query Frame = 1


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTFHEVVDEIYNQVDHVEPW---------MTGNCRGP- 73
           L  ++  NILSS YFK +LY LKT+HEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  --------STAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

Query: 134 FEPYVKDEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFD 193
           FE ++ DEE+   ++ G           + +G+  R  L   E              +F 
Sbjct: 178 FESFLDDEEDLDVKAGGGCV--------MTIGEMLRSFLTKLE--------------WFS 237

Query: 194 TLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQR 253
           TLFPRIPV V + +   ++      K  G  G    I      RR  S + SLS    +R
Sbjct: 238 TLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEG-AEEIDRHVERRRSRSPRRSLSP---RR 297

Query: 254 APHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHD--------R 313
           +P R+ +R  S  R     S  DR+ + + +R    R    RE+ R R           R
Sbjct: 298 SPRRSRSR--SHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRR 357

Query: 314 ERSSDRDHGRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRE 373
            RS +R   R RSRD +G  RDRDR+R++E  R R RDRD D+ER  G  R++ERER RE
Sbjct: 358 SRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKER--GNEREKERERSRE 417

Query: 374 RS---------------YDYDRRTHYADSRRDYKRSSRDSVTR-----HYRRSRSRS--- 433
           RS                D D R H  D +RD K+  + S +R     H  RSRSR+   
Sbjct: 418 RSKEQRSRGEVEEKKHKEDKDDRRH-RDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGK 477

Query: 434 RSRSRSQSLLQTGNDGYHKREASPVRGGTTEKT-SINLAKLKD-IYGDVREEKGDLSKER 453
           RSRSRS+       +   ++     R G+  +T S+  +K ++      +  K   SKER
Sbjct: 478 RSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKER 517

[Close]

BLAST of Cp4.1LG01g19710 vs. Swiss-Prot
Match: PR38B_DANRE (Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.9e-38
Identity = 169/487 (34.70%), Postives = 232/487 (47.64%), Query Frame = 1


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTFHEVVDEIYNQVDHVEPW---------MTGNCRGP- 73
           L  ++  N+LSS YFK +LY LKT+HEVVDEIY +V+HVEPW          TG C G  
Sbjct: 36  LNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVR 95

Query: 74  --------STAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSP IRA+GF+Y+RY      L +W
Sbjct: 96  GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHSDSPDIRALGFMYIRYTQPPPDLVDW 155

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYF 193
           ++ ++ DEEE   ++ G  + T+G  +R  L                   K E     +F
Sbjct: 156 YDEFLDDEEELDVKAGGGCVMTVGEMLRSFLT------------------KLE-----WF 215

Query: 194 DTLFPRIPVSVLRQVAANL------------------EKLKLPSKHSGVTGETHRIGSED 253
            TLFPRIPV V + +  ++                  E    P+  +G  G+  R     
Sbjct: 216 STLFPRIPVPVQKAIDQHMKSRPRKPPQKDEQEEEEEEATAAPAADTGRHGDKRR---SR 275

Query: 254 TARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDN 313
           T RR PS + S + S   R+ HR     S              D + + +R    +  + 
Sbjct: 276 TPRRSPSPRKSQNRS-RSRSHHRERHGASF-------------DYELERERDRQRKEREG 335

Query: 314 RERSRDRDHDRERSSDRDHGRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDRERE-KG 373
           ++R RDRD DRER  +RD  R+RSR     DR+ +R R R R R R R   RD+  E K 
Sbjct: 336 KDRDRDRDRDRERDRERDRDRRRSRT---PDRNAERRRSRSRERRRSRSTSRDKRTERKD 395

Query: 374 RGRDRERERDRERSYDYDRRTHYADSRRDYKRSSRDSVTRHYR--RSRSRSRSRSRSQSL 433
           R +DRE E +RERS   DR  H    R   KRS  +   R ++  +   + R   RS+  
Sbjct: 396 RDKDREAESERERSRKKDREHHKDRERSKDKRSKGEGEERRHKDDKEEKKHREEKRSKRS 455

Query: 434 LQTGNDGYHKREASPVRGGTTEKTSINLA------KLKDIYGDVREEKGDLSKERFNNRR 454
                D  HK E S  +   +   S   A      K +  +   R+ K   SKER ++RR
Sbjct: 456 RSRSRDRKHKAERSSKKRSRSGSRSRQEAGEEKNRKRERSHSKDRQHKRSRSKER-SHRR 478

[Close]

BLAST of Cp4.1LG01g19710 vs. TrEMBL
Match: F6HI04_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0043g00270 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 4.8e-155
Identity = 334/485 (68.87%), Postives = 373/485 (76.91%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+T GK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTSGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRY  D KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYAGDPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSP S GRMTTMG YVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPGSTGRMTTMGAYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV ++RQ+ ANLEK+KLPSKH+GVTG+T R GS+DTARRPPSVKA+LSVSFGQRAPHRAS
Sbjct: 181 PVPIMRQIVANLEKMKLPSKHAGVTGDTTRHGSDDTARRPPSVKAALSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVS--DRDNKDDLQRSPSSRHPDNRE--------RSRDRDHDRERSS 300
           TRDSSPVR TLPP     DR++ DDL+RSPSSR   +RE        R RDR   RE   
Sbjct: 241 TRDSSPVRRTLPPPPPSYDRNSSDDLRRSPSSRRSQSRELSDREYSDRDRDRGKSRELDR 300

Query: 301 DRDHGRKRSRD-----SRGKDRDR--DRDRDRERYRNRERDRDRDREREKGRGRDRERER 360
           DRDH R+R R+     +R KDRDR  DRDRDR++ R+R+RDRDRDR+++K R RDRERER
Sbjct: 301 DRDHDRERDRERDRTRNRDKDRDRAMDRDRDRDKDRDRDRDRDRDRDKDKDRDRDRERER 360

Query: 361 DRERSYDYDRRTHYA--DSRRDYKRSSRDS--VTRHYRRSRSRSRSRSRSQSLLQTGNDG 420
           DR+R +DYDRR+ Y   +SRRDY RSSRD     R     RSRSRSRSRSQS LQ  ND 
Sbjct: 361 DRDRRHDYDRRSKYTERESRRDYDRSSRDGSRYNRETSSRRSRSRSRSRSQS-LQARNDH 420

Query: 421 YHKREASPVRGGTTEKT--SINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLG 462
              R +SP+  G+ EKT  S NLAKL+D+YGD  ++KG  + ER  +RRD+SGEEVIRLG
Sbjct: 421 IDHR-SSPLADGSKEKTSASANLAKLRDLYGDTGDQKGGSAMER-GSRRDNSGEEVIRLG 459

[Close]

BLAST of Cp4.1LG01g19710 vs. TrEMBL
Match: A0A0B2S496_GLYSO (Pre-mRNA-splicing factor 38B OS=Glycine soja GN=glysoja_016875 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 1.9e-151
Identity = 325/476 (68.28%), Postives = 363/476 (76.26%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+TCG+ IDSLLEKVLCMNILSSDYFKELYRLKT+HEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTCGRPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRY AD KTLWNWFE YVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYCADPKTLWNWFESYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           D+EEFSP S+GRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DDEEFSPGSNGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV +NLEKLKLPS HSG TGET R GS+DTARRPPSVKA+LSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVSNLEKLKLPSTHSGSTGETTRHGSDDTARRPPSVKAALSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRE-RSRDRDHDRERSSDRDHGRKRS 300
           TRDSSP+R TLP    +++  DD++RSPS+R   +RE   RDRD DR+RS  RD  R+R 
Sbjct: 241 TRDSSPIRRTLPS--HEKNGSDDIRRSPSNRRSQSREYPDRDRDRDRDRSQSRDRDRERD 300

Query: 301 RDSRGKDRDRDRDRDRERYRNRERDRDRDRER------EKGRGRDR-----ERERDRERS 360
           RD R ++RDRDR RDR+R R  ERDRDRDRER      E+ + RDR     ERER+RERS
Sbjct: 301 RD-RDRERDRDRYRDRDRNREWERDRDRDRERYRDHDSERDQDRDRIRRNNERERERERS 360

Query: 361 YDYDRRTHYA--DSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREAS 420
           YDYD+R+ Y   +S RDY     D+ +RHYRRSRSRSRSRSRS+S LQ G   Y  R + 
Sbjct: 361 YDYDKRSKYTERESSRDY-----DNGSRHYRRSRSRSRSRSRSRS-LQAGTGRYESRSSP 420

Query: 421 PVRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGS-WK 462
                     S NLAKLKD+YGD+ + KGD + ER   R+DS GEEVIRLGGS WK
Sbjct: 421 QREESKRTSASSNLAKLKDMYGDLGDSKGDANMERI-PRKDSGGEEVIRLGGSTWK 443

[Close]

BLAST of Cp4.1LG01g19710 vs. TrEMBL
Match: A0A0L9UWE1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g078200 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 7.2e-151
Identity = 319/477 (66.88%), Postives = 362/477 (75.89%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+TCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRY  D KTLW+WFEPY+K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYCGDPKTLWSWFEPYIK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSP S+GRMTTMGVY+RDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPGSNGRMTTMGVYIRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV +NLEKLKLP+ HSG TGE+ R GS+DTARRPPSVKA+LSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVSNLEKLKLPTTHSGSTGESTRHGSDDTARRPPSVKAALSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRE---RSRDRDHDRERSSDRDHGRK 300
           TRDSSP+R TLP    +R+  DD++RSPSSR   +RE   R RDR+  R R  DRDH R 
Sbjct: 241 TRDSSPIRRTLPS--HERNGSDDIRRSPSSRRSQSREYPDRDRDRERSRSRDRDRDHDRD 300

Query: 301 RSRD-SRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERD---------RER 360
           R R+  R +DR+RDRDR R+R RNRE +RDRDRER + R  DR++ERD         RER
Sbjct: 301 RDRERERDRDRERDRDRYRDRDRNREWERDRDRERYRDRDSDRDQERDRIRRDKERERER 360

Query: 361 SYDYDRRTHYA--DSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREA 420
           SYDYDRR+ +   +S RDY     D+ +RHYR+SRSRSRSRSRSQS  Q G   +  R +
Sbjct: 361 SYDYDRRSKHTERESSRDY-----DNGSRHYRKSRSRSRSRSRSQS-QQAGTARHESRSS 420

Query: 421 SPVRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGS-WK 462
            P  G      S NLAKLKD+YGD+ + KG++  E+   R+DS GEEVIRLGGS WK
Sbjct: 421 PPRDGSKRTSASSNLAKLKDMYGDLGDNKGEIRMEKI-PRKDSGGEEVIRLGGSTWK 445

[Close]

BLAST of Cp4.1LG01g19710 vs. TrEMBL
Match: A0A0S3RL76_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G098000 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 7.2e-151
Identity = 319/477 (66.88%), Postives = 362/477 (75.89%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+TCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRY  D KTLW+WFEPY+K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYCGDPKTLWSWFEPYIK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSP S+GRMTTMGVY+RDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPGSNGRMTTMGVYIRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV +NLEKLKLP+ HSG TGE+ R GS+DTARRPPSVKA+LSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVSNLEKLKLPTTHSGSTGESTRHGSDDTARRPPSVKAALSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRE---RSRDRDHDRERSSDRDHGRK 300
           TRDSSP+R TLP    +R+  DD++RSPSSR   +RE   R RDR+  R R  DRDH R 
Sbjct: 241 TRDSSPIRRTLPS--HERNGSDDIRRSPSSRRSQSREYPDRDRDRERSRSRDRDRDHDRD 300

Query: 301 RSRD-SRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERD---------RER 360
           R R+  R +DR+RDRDR R+R RNRE +RDRDRER + R  DR++ERD         RER
Sbjct: 301 RDRERERDRDRERDRDRYRDRDRNREWERDRDRERYRDRDSDRDQERDRIRRDKERERER 360

Query: 361 SYDYDRRTHYA--DSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREA 420
           SYDYDRR+ +   +S RDY     D+ +RHYR+SRSRSRSRSRSQS  Q G   +  R +
Sbjct: 361 SYDYDRRSKHTERESSRDY-----DNGSRHYRKSRSRSRSRSRSQS-QQAGTARHESRSS 420

Query: 421 SPVRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGS-WK 462
            P  G      S NLAKLKD+YGD+ + KG++  E+   R+DS GEEVIRLGGS WK
Sbjct: 421 PPRDGSKRTSASSNLAKLKDMYGDLGDNKGEIRMEKI-PRKDSGGEEVIRLGGSTWK 445

[Close]

BLAST of Cp4.1LG01g19710 vs. TrEMBL
Match: I1MBS7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G211600 PE=4 SV=1)

HSP 1 Score: 540.0 bits (1390), Expect = 2.7e-150
Identity = 323/476 (67.86%), Postives = 362/476 (76.05%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+TCG+ IDSLLEKVLCMNILSSDYFKELYRLKT+HEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTCGRPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRY AD KTLWNWFE YVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYCADPKTLWNWFESYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           D+EEFSP S+GRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DDEEFSPGSNGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV +NLEKLKLPS HSG TGET R GS+DTARRPPSVKA+LSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVSNLEKLKLPSTHSGSTGETTRHGSDDTARRPPSVKAALSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRE-RSRDRDHDRERSSDRDHGRKRS 300
           TRDSSP+R TLP    +++  DD++RSPS+R   +RE   R+RD DR+RS  RD  R+R 
Sbjct: 241 TRDSSPIRRTLPS--HEKNGSDDIRRSPSNRRSQSREYPDRERDRDRDRSQSRDRDRERD 300

Query: 301 RDSRGKDRDRDRDRDRERYRNRERDRDRDRER------EKGRGRDR-----ERERDRERS 360
           RD R ++RDRDR RDR+R R  ERDRDRDRER      E+ + RDR     ERER+RER 
Sbjct: 301 RD-RDRERDRDRYRDRDRNREWERDRDRDRERYRDHDSERDQDRDRIRRNNERERERERI 360

Query: 361 YDYDRRTHYA--DSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREAS 420
           YDYD+R+ Y   +S RDY     D+ +RHYRRSRSRSRSRSRS+S LQ G   Y  R + 
Sbjct: 361 YDYDKRSKYTERESSRDY-----DNGSRHYRRSRSRSRSRSRSRS-LQAGTGWYESRSSP 420

Query: 421 PVRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGS-WK 462
                     S NLAKLKD+YGD+ + KGD + ER   R+DS GEEVIRLGGS WK
Sbjct: 421 QREESKRTSASSNLAKLKDMYGDLGDSKGDANMERI-PRKDSGGEEVIRLGGSTWK 443

[Close]

BLAST of Cp4.1LG01g19710 vs. TAIR10
Match: AT5G37370.1 (AT5G37370.1 PRP38 family protein)

HSP 1 Score: 438.7 bits (1127), Expect = 4.4e-123
Identity = 281/472 (59.53%), Postives = 321/472 (68.01%), Query Frame = 1


Query: 2   EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+A +SLLEKVL MNILSSDYFKELY LKT+HEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W+EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRIP 181
           +EEFSP S+GRMTTMGVYVRDLLLG                        YYFDTLFPRIP
Sbjct: 123 DEEFSPGSNGRMTTMGVYVRDLLLGL-----------------------YYFDTLFPRIP 182

Query: 182 VSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAST 241
           V V+RQ+ +NLEK+ LP+K SG TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRAST
Sbjct: 183 VPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRAST 242

Query: 242 RDSSPVRCTLPPSVSDRDNKDDLQ-RSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSR 301
           R SSPVR   PP+  DR+  D++Q RSP                             R  
Sbjct: 243 RGSSPVRRP-PPTGYDRNGGDEVQQRSP-----------------------------RRS 302

Query: 302 DSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYADS 361
            SR    DRD D      R RER+R++DRERE+GR R RERERD    Y  DRR     S
Sbjct: 303 QSRDYYSDRDSD------RQREREREKDRERERGRDRYRERERD----YGNDRR-----S 362

Query: 362 RRDYKRSSR-----DSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTT-E 421
           RRDY   SR     D  +RH RRSRSRSRSRSRS  +         +RE +P R  +  E
Sbjct: 363 RRDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSRSVQI---------EREPTPKRDSSNKE 393

Query: 422 KTSI----NLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGG-SWK 462
           K+++    NLAKLKD+YGD   +K D   E F  R+DSS EEVI+LGG SW+
Sbjct: 423 KSAVTVNSNLAKLKDLYGDASSQKRD---EGFGTRKDSSSEEVIKLGGSSWR 393

[Close]

BLAST of Cp4.1LG01g19710 vs. TAIR10
Match: AT2G40650.1 (AT2G40650.1 PRP38 family protein)

HSP 1 Score: 49.7 bits (117), Expect = 5.7e-06
Identity = 94/341 (27.57%), Postives = 143/341 (41.94%), Query Frame = 1


Query: 12  SLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYK 71
           +L+EK++   I    ++KE     T   +VD+   ++DH+     G+ R P+   CL+ K
Sbjct: 19  NLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAM-ELDHLGGTFGGS-RKPTPFLCLILK 78

Query: 72  FFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKDEEEFSPESHG 131
              ++   + +   +K++D  Y+R +G  YLR       ++ + EP   D  +       
Sbjct: 79  MLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYLEPLYNDYRK------- 138

Query: 132 RMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRIPVSVLRQVAAN 191
                   VR  L      L+  DE ++     E L  +Y  D   PR+      +    
Sbjct: 139 --------VRQKLSDGKFSLTHVDEVIE-----ELLTKDYSCDIAMPRLKKRWTLEQNGL 198

Query: 192 LEKLK------LPSKHSGVTGETHRIGSEDTA--RRPPSVKASLSVSFGQRAPHRASTRD 251
           LE  K         +      E    GSED    RR    +        +R  HR   RD
Sbjct: 199 LEPRKSVLEDDFEEEEEKEENEGIADGSEDEMDQRRKSPERERERDRDRRRDSHRHRDRD 258

Query: 252 SSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSRDSR 311
                        DRD+  D +R     H  +R+R RDRDH RER  DR+ GR R RD R
Sbjct: 259 YDR------DYDMDRDHDRDYERERG--HGRDRDRERDRDHYRERDRDRERGRDRERDRR 318

Query: 312 GKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERD 345
            + R R R R R+R R+ E D  RDRE  K +   +E+ ++
Sbjct: 319 DRARRRSRSRSRDRKRH-ETDDVRDREEPKKKKEKKEKMKE 328

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: gi|778702200|ref|XP_011655154.1| (PREDICTED: pre-mRNA-splicing factor 38B [Cucumis sativus])

HSP 1 Score: 660.6 bits (1703), Expect = 2.0e-186
Identity = 374/472 (79.24%), Postives = 398/472 (84.32%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           D+EEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV +NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSR------HPDNRERSRDRDHDRERSSDRDH 300
           TRDSSPVR TLP S +DRDN DDL+RSPS R      HPD+RERSRDR+ DRERS DRD+
Sbjct: 241 TRDSSPVRRTLPSSANDRDNNDDLRRSPSIRRSQSREHPDSRERSRDREFDRERSRDRDY 300

Query: 301 GRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRR 360
            R R    RG+DRDRDR+ DR+R + R+R+RDRDREREK R R+R+RERDRERSYDYDRR
Sbjct: 301 DRDR---DRGRDRDRDREHDRDREKYRDRERDRDREREKARDRERDRERDRERSYDYDRR 360

Query: 361 THYAD--SRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGT 420
           THY+D  SRRD++RSSRD  TRHYRRSRSRSRSRSRS+S LQT    +H+RE SP RGGT
Sbjct: 361 THYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRSRS-LQT----HHEREPSPARGGT 420

Query: 421 TEKTSI---NLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK 462
           TEK S+   NLAKLKDIYGDV E+KGD SK    NRRD SGEEVIRLGGSWK
Sbjct: 421 TEKASVISSNLAKLKDIYGDVSEQKGDSSKV---NRRDGSGEEVIRLGGSWK 438

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: gi|659126372|ref|XP_008463149.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X4 [Cucumis melo])

HSP 1 Score: 656.0 bits (1691), Expect = 4.9e-185
Identity = 381/501 (76.05%), Postives = 405/501 (80.84%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           D+EEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV +NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSR------HPDNRERSRDRDHDRERSSDRDH 300
           TRDSSPVR TLP SV+DRD  DDL+RSPS+R      HPD+RERSRDR++DRERS DRD+
Sbjct: 241 TRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDRDY 300

Query: 301 GRKRSRD---------------------------SRGKDRDRDR--DRDRERYRNRERDR 360
            R+RSRD                            RG+DRDRDR  DRDRE+YR+RE  R
Sbjct: 301 DRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRDREKYRDRE--R 360

Query: 361 DRDREREKGRGRDRERERDRERSYDYDRRTHYAD--SRRDYKRSSRDSVTRHYRRSRSRS 420
           DRDREREK R R+R+RERDRERSYDYDRRTHY+D  SRRD++RSSRD  TRHYRRSRSRS
Sbjct: 361 DRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRS 420

Query: 421 RSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSI---NLAKLKDIYGDVREEKGDLSKE 462
           RSRSR +S LQT    +H+RE SP RGGTTEK S+   NLAKLKDIYGDV E+KGD SK 
Sbjct: 421 RSRSRGRS-LQT----HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSK- 468

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: gi|659126374|ref|XP_008463150.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X5 [Cucumis melo])

HSP 1 Score: 651.4 bits (1679), Expect = 1.2e-183
Identity = 377/499 (75.55%), Postives = 404/499 (80.96%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           D+EEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV +NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSR------HPDNRE----------RSRDRDH 300
           TRDSSPVR TLP SV+DRD  DDL+RSPS+R      HPD+RE          RSRDR++
Sbjct: 241 TRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDREY 300

Query: 301 DRERSSDRDHGRKRSRD-----------------SRGKDRDRDRDRDRERYRNRERDRDR 360
           DRERS DRD+ R+RSRD                  RG+DRDRDR+ DR+R + R+R+RDR
Sbjct: 301 DRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRDREKYRDRERDR 360

Query: 361 DREREKGRGRDRERERDRERSYDYDRRTHYAD--SRRDYKRSSRDSVTRHYRRSRSRSRS 420
           DREREK R R+R+RERDRERSYDYDRRTHY+D  SRRD++RSSRD  TRHYRRSRSRSRS
Sbjct: 361 DREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRS 420

Query: 421 RSRSQSLLQTGNDGYHKREASPVRGGTTEKTSI---NLAKLKDIYGDVREEKGDLSKERF 462
           RSR +S LQT    +H+RE SP RGGTTEK S+   NLAKLKDIYGDV E+KGD SK   
Sbjct: 421 RSRGRS-LQT----HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSK--- 468

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: gi|659126368|ref|XP_008463147.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X2 [Cucumis melo])

HSP 1 Score: 592.0 bits (1525), Expect = 8.7e-166
Identity = 354/509 (69.55%), Postives = 381/509 (74.85%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           D+EEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAP---- 240
           PV VLRQV +NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAP    
Sbjct: 181 PVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 ------------HRASTRDSSPVRCTLP----------PSVSDRDNKDDLQRSPSSRHPD 300
                          + RD +      P          P   +R    +  R  S     
Sbjct: 241 TRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDRDY 300

Query: 301 NRERSRDRDHDRERSSDRDHGRKRSRD-----------------SRGKDRDRDRDRDRER 360
           +RERSRDRD+DRERS DRD+ R+RSRD                  RG+DRDRDR+ DR+R
Sbjct: 301 DRERSRDRDYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRDR 360

Query: 361 YRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYAD--SRRDYKRSSRDSVTRH 420
            + R+R+RDRDREREK R R+R+RERDRERSYDYDRRTHY+D  SRRD++RSSRD  TRH
Sbjct: 361 EKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRH 420

Query: 421 YRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSI---NLAKLKDIYGDVRE 462
           YRRSRSRSRSRSR +S LQT    +H+RE SP RGGTTEK S+   NLAKLKDIYGDV E
Sbjct: 421 YRRSRSRSRSRSRGRS-LQT----HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVSE 478

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: gi|659126370|ref|XP_008463148.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X3 [Cucumis melo])

HSP 1 Score: 587.8 bits (1514), Expect = 1.6e-164
Identity = 352/509 (69.16%), Postives = 379/509 (74.46%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           D+EEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQ------- 240
           PV VLRQV +NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQ       
Sbjct: 181 PVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 ---------RAPHRASTRDSSPVRCTLP----------PSVSDRDNKDDLQRSPSSRHPD 300
                      P   + RD +      P          P   +R    +  R  S     
Sbjct: 241 TRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDREY 300

Query: 301 NRERSRDRDHDRERSSDRDHGRKRSRD-----------------SRGKDRDRDRDRDRER 360
           +RERSRDRD+DRERS DRD+ R+RSRD                  RG+DRDRDR+ DR+R
Sbjct: 301 DRERSRDRDYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRDR 360

Query: 361 YRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYAD--SRRDYKRSSRDSVTRH 420
            + R+R+RDRDREREK R R+R+RERDRERSYDYDRRTHY+D  SRRD++RSSRD  TRH
Sbjct: 361 EKYRDRERDRDREREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRH 420

Query: 421 YRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSI---NLAKLKDIYGDVRE 462
           YRRSRSRSRSRSR +S LQT    +H+RE SP RGGTTEK S+   NLAKLKDIYGDV E
Sbjct: 421 YRRSRSRSRSRSRGRS-LQT----HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVSE 478

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g19710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PR38B_MOUSE	1.1e-43	35.39	Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1	[more]
PR38B_RAT	1.4e-43	36.29	Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=1 SV=1	[more]
PR38B_HUMAN	2.5e-43	36.86	Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1	[more]
PR38B_DANRE	6.9e-38	34.70	Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1	[more]

BLAST of Cp4.1LG01g19710 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HI04_VITVI	4.8e-155	68.87	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0043g00270 PE=4 SV=...	[more]
A0A0B2S496_GLYSO	1.9e-151	68.28	Pre-mRNA-splicing factor 38B OS=Glycine soja GN=glysoja_016875 PE=4 SV=1	[more]
A0A0L9UWE1_PHAAN	7.2e-151	66.88	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g078200 PE=4 SV=1	[more]
A0A0S3RL76_PHAAN	7.2e-151	66.88	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G098000 PE=...	[more]
I1MBS7_SOYBN	2.7e-150	67.86	Uncharacterized protein OS=Glycine max GN=GLYMA_14G211600 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g19710 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37370.1	4.4e-123	59.53	PRP38 family protein	[more]
AT2G40650.1	5.7e-06	27.57	PRP38 family protein	[more]

BLAST of Cp4.1LG01g19710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778702200\|ref\|XP_011655154.1\|	2.0e-186	79.24	PREDICTED: pre-mRNA-splicing factor 38B [Cucumis sativus]	[more]
gi\|659126372\|ref\|XP_008463149.1\|	4.9e-185	76.05	PREDICTED: pre-mRNA-splicing factor 38B isoform X4 [Cucumis melo]	[more]
gi\|659126374\|ref\|XP_008463150.1\|	1.2e-183	75.55	PREDICTED: pre-mRNA-splicing factor 38B isoform X5 [Cucumis melo]	[more]
gi\|659126368\|ref\|XP_008463147.1\|	8.7e-166	69.55	PREDICTED: pre-mRNA-splicing factor 38B isoform X2 [Cucumis melo]	[more]
gi\|659126370\|ref\|XP_008463148.1\|	1.6e-164	69.16	PREDICTED: pre-mRNA-splicing factor 38B isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024767	PRP38_C
IPR005037	PRP38

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009651	response to salt stress
biological_process	GO:0008150	biological_process
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g19710.1	Cp4.1LG01g19710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 171..250 score: 2.2E-169coord: 375..455 score: 2.2E-169coord: 1..147 score: 2.2E-169coord: 267..357 score: 2.2E
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 11..146 score: 4.6
IPR024767	Pre-mRNA-splicing factor 38, C-terminal	PFAM	PF12871	PRP38_assoc	coord: 208..302 score: 9.
None	No IPR available	PANTHER	PTHR23142:SF3	SUBFAMILY NOT NAMED	coord: 1..147 score: 2.2E-169coord: 267..357 score: 2.2E-169coord: 171..250 score: 2.2E-169coord: 375..455 score: 2.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g19710	CmaCh15G007610	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g19710	CmaCh04G022770	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g19710	CmoCh15G007870	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g19710	CmoCh04G023810	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g19710	Cla009142	Watermelon (97103) v1	cpewmB441
Cp4.1LG01g19710	Csa5G348070	Cucumber (Chinese Long) v2	cpecuB423
Cp4.1LG01g19710	MELO3C025080	Melon (DHL92) v3.5.1	cpemeB359
Cp4.1LG01g19710	ClCG01G008650	Watermelon (Charleston Gray)	cpewcgB370
Cp4.1LG01g19710	CSPI05G13720	Wild cucumber (PI 183967)	cpecpiB427
Cp4.1LG01g19710	Lsi09G009050	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g19710	MELO3C025080.2	Melon (DHL92) v3.6.1	cpemedB419
Cp4.1LG01g19710	CsaV3_5G020660	Cucumber (Chinese Long) v3	cpecucB0525
Cp4.1LG01g19710	Bhi12G001044	Wax gourd	cpewgoB0490
Cp4.1LG01g19710	CsGy5G013630	Cucumber (Gy14) v2	cgybcpeB632
Cp4.1LG01g19710	Carg01445	Silver-seed gourd	carcpeB1158
Cp4.1LG01g19710	Carg18286	Silver-seed gourd	carcpeB0747

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g19710	Cp4.1LG13g05370	Cucurbita pepo (Zucchini)	cpecpeB199

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g19710	Cucumber (Gy14) v1	cgycpeB0704
Cp4.1LG01g19710	Melon (DHL92) v3.5.1	cpemeB351
Cp4.1LG01g19710	Melon (DHL92) v3.6.1	cpemedB411