CmaCh04G022770 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G022770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pre-mRNA-splicing factor 38B
Location	Cma_Chr04 : 15886909 .. 15895613 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCCTTTCCTTCGTACGGCGAGATTTCTTCTCTTTGCCGTCTTTCCCTTTTCCGCTCGACAATTTTGCTACTTCATTTCGTTTCCCAACGGTATGTGTTTGTTGCGATTGTTTCTGAATCTCTTAGGTTTATTGTTTTTTAGATGGTTTAAGCAAATTTTGAATCCGGGTACTTCGAAGCGTGTCTTATATGTGTGGTTGAGTAGCTTGATCGATTGAATTGGAGGATGTTTAGGAGTTTGGTTCTTTTAGTTCCAGTTTTCTTAAGATGGTTCTTCCAATGTTCTATAATGTGATGGTGATGATGGCGATTTCTAGTTTTAAGATCTTTCCTTTTTTCTACTTTTTTTCCTGTGATAATTAACTGGGTTTGGCGTCGTTGTCTTGACTTCTTATTTAGTAGTTTGAGGATTTTTTTTGTTATTACTTTACTAAAACCCCTTCTTATTGGGTTTGATTGGGTTTATCTGTTATTAAGTTAGACGTGGTTTTGAATTGTTTGTTTTTTTATTGATTTCTTCTGTTCATTTTGGAGTGGAATACTAAGGTTACTGAATTTATGTAGTCAATTATCAATATTTTGGATTCAATTATAGGGTTTGAGAAGACGTATTACCATTTGGGTTTCTTAAATTTAATCCTGTGTATGAAAAATTTTGTGTGAAGATGGAGTTCCTGGATCCTAATTGTTTGGGTTTTTCAAACTTCAATTGTTATTGGAAGTTCTAGATGTAGTAAATGTTAAGCATCTAAATGAATAAACTAGGAAGGTTGTATTGAGTAGAATGTCAGTTGAAGGTAAGAAACAAGGTGTACTTAAGGACCTCCAACTTGATGATGGCATGGGTTATTTTGTTCTATCAAAGAGGAGTCTTTTTCACACCCTCAGATTATTTGAAGCGTCATCGGGTATTGAGATTAATATCAATAGAAGTAATATTACCGTTATCATCTGATCATCGAATAATTAGAAACATTTGCTGAATGGATTTTTCTGCAATTAGTGATTTATTGACTGGTCCATTATCAAGTAACCTGTACAAGTTTGGTGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAGCAAAGCACACAGTTTTGCAACTTTTGGATGTAGGCTTCAAGTAGGGATGTTCTAGTAACCCGCCGAACAACCCAAGTTCAAAGGATTGGGTTTGGTTATTTTTATGCATGATTGAAATAGTCATAAGAGTTGTAAATGAATGTAATCTGTGGAGGAAAATTCTGAACAACATAAGTTGATGAAATTGGACATCGAAATATTGTAGTGAAAGTTGAAGGCTTTTTCTGCTTTAAGATTTTTATAGCTAATAATAGTTGAAAACAAGAAGTGAATGAAGGCAGCCTTTCCTGGCTGCTGACTTGGGGAGGATGTCTAGCTTTTTTTTGCTAGCTTGCACTACTTGAAATATTTTTACACATCAGTTCAATGTCACTTGTGGAAAAAAGAAAAATGTTCTTTTGTAGGTGTCTTTCGTTGTTGGTTCCTTTCTTTTTGTATGCAGACCATGTATGTTTCTCATATGCTATCAGATTAGAGTGACTTAATTTGAGTTTGTCTTCTCCAGACTATATCTTCAGGCTTGCTGTTATCAAATTTTCTTTTCATATTATTTTTTAATTACTGAATTTATTATGTAGTATATTCTTGTCCCTGCAGGTAGATGTCTAGTTGATTTAAAATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTCGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGGTAGGTAGAATCCCTTTGACCTTTAATTATTATTAAATAATAATGAATTGACATGTTATATTGTTAAACTTTTATTTTTACTCCTTTTGTGAATTCCATATTATTTATTCATTTTCTTTTGTAAATATATTATGGACATTAAGATTGAAAGCTTGCAGTGTGTATATTTTTAAAAAATTAATATTCTTCATGTTGCATGTACTTTTACAATCTTTGTTGGAACTTTGATTAATAGTGTACAAATTGGGTCAAATATTGCTGTTGTAAATGGTTTACTATGATAATTTAGTTAACTTAACTGGACGTAGATTTGTTAGTGTATTCTTGAAGGTTTCTGTTTCTATAGCATGAAATTTTCTTGTGTGCATTTTAGAGAATAATTAATTCTTTCTTTTCATCATATTTACGTTACAAAGCATTTCAGCTATATCTCTGCTTATTAGTATGTAGTGATCCATGGATCTTTGAAGAATCTGCATTGCTATATGTTTCCGCTTTTATTATGTTATTTTTTTAAAAAAATAACTTTCTGTTGCTTTTCTTTTCTGATTGGTAGTTGTATATATGTGCTTCTAGATATTTAGTCCTCCCTCAACTTTGGGATGTTGAAGAAGAATCGTATTTTTGATTGAATTTTGTTATTGTCACCTAGAATAGACTACTAATCTAAACTAGTATGCTTCTTCAAAATAGATTGGAGACTAGCTCTTGGTATATTTATGCGTTAGGCTGCTCCCTTCCTAAGTTCTACCTTCATTCCATCTCAATTCTGTTCTGCCAGAACAGTATTGGTTCGGGATAATTAAATAAATAAATAATTAATTAAAAATAACATAAAGCTGCATGTTGTATTTTGATTTAATTATGAACATTCTTTCTTCATAATTTGCTTTCTTATCTTATTATTATGATGCCCTTAGTTGTCCGATGTTTAAGAAATTTTGGGTGTAGCTGTATGATTTGGTTCTGCTACCATTTGACGTTATTTCTTTAATTAATTTTTCCAGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTTTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGTATATGATACATATGGGTGCTTGTTTTTTGTTTTTTTTATTATGAGAACTGGTGCTAAAGATAACAGTTAGCATGCATGTGTTTGGCTTAGAATTTTCCTTAATGTGACTGTAAGTTGTTTTTTGTCGTTTGTATCATTGTTTTCTGCTTCCTTCAATGTAATTGTATTGATAATTGATTAAGCACAGACTTATTTTCAATATTATAGGGAGGACATATATGCTTGTGAAGTATGGTAGACATTCAAAATTAAAATTACGGCTGTTGATACTTACTAATCCAGTTATTACTCTGTTCTTTTAATTGACTTTCTACTGCAACCCCTCCCTTTGGAGAATGCATTTGTAACCTCTCCTTTTGTACTACAACGGATGCCTTGTCCCTTTGTATGTGAGGCCATTTTGGCTTGGTTGGTACCAACACCCACCCTAGTTGAATTCTGATTTTGTTCTTTTGCGAGTGGAAGTGAAGATGAATACTGAGGCTCCTTTCTCTTACACTTTATTAGTTATACAAGTGGATCACTTCGTAAGAAAAAGTAAAGAGAAGGTGTGGGCAGACACAGGACCTGATTTTTGTATGTTTTTCGTTAAGTTCGAGATCACTCTAACATGTAGAAGTAAAAGAATACTATTTTACAAAGCTGGAATAGATGAGATTGCAAAAGTTCCTTTGAGGAGTCTGCAAACAACTTCTACCCAATGACTCCCTACGAGTTATGATCTAAAAAAATTCAAAACTAGGATTAAAGCTGTAACAGTTCAAGCCCAAGCCCACCGCTAGCAGATATTGTCCTCATTGGGCTTTCCCTTCCAACCTTCCCTTCAAGGTTCATCCACTAGGGAGAGGTTTCACACCCTTATAAGGAATGTTTTATTCCCTTCTCCAACTGGTGTGGGGTCAATCCACCCCCATTGGGGGGCCAGCGTCCTTGCTGGCACACTGCCCAGTGTCTGGTTCGAATACCATTTGTAACAGCCCAAACCCACTGCTAGCAGATATTGTCCTTTTTAGGCTTCCCCTTTCGGGCTTCCCTCAAGGTTTTAAAATGCATCCACTAGGGAGAGTTGTCCACACCCTTATAAGGAGTGCTCTATTTCCTTGTCCAACCAACGTGGGATCTCACAAAAGCTTTCCCCTAGTTGAAACATGGTTAATGTCCTCTCACAAAGAACACATTTGTTGTTTTAGGCAATTACCAAGATGAGTTTTATTGATCTTGTATTCGCGTTGGTTCTTGTAAGACTGAGACTAAATAAATATTCGATATCTTCTTGGGTGCTTTTGATTTTGAACGAAGACTAGTGAATTATTTAGTAAGGACGATACAAATTTTGCAGAGCTCCAATTGCAAGTAAATAAATGAGAGGGTTAAACTTCCACCCTCCCTTTGAATTTATTTCTTGGACCAAAATCTCTAAGGAATTCATGAAGTTCAAGAAGATATGGCCACTTGCCATCTGGTTACCTATCTGGTCACCTCCCTTGTTCAGCCAACTCCTAAATCTTATATACAAAAGATGATTTAGAAATTTAATACTTTGTTGGAACATATGTTGCATGTTAGAGAGGTTTGAGATCCCATTTTTGATCTGGCTATGTTTTTTTCACTATTACTAACAAAAGTGGCTCCAAGGGAGAAGTGATTTGCTTTCAGGTTCCAAAGTATGGGGGGGCGACCATGAGATTGAAGTCCCATCCTTCCATATGAAATTTTTTTTGGTCTAGTTACTATCTCAAAGGTGAGAGGTTATGTTCAAAGTGGACAATATCATATCATTGTGGAGGTTTGTTGTTCCTAACCATTGGTATCAGAGCCCAATTTTGGAGTTTTGTTGATTACTTACATCGTGATCGGTAAAGAGTTGCCCATGATGGAGCTGTAAAACCCTCGTCACTTCCTAGTACTAGCTGTAGGTCATATGATGATTCACTGTTATTGATTTGATTGATTATAATATGTGGTCGAAGTGGCCTACAAGGGCACAAAAAGACCTAGCTTTAGAAGCCCCACCCCTGGCGCAGTTAGTAAATGCAAATATAAATTCAGCGATAGGGGTGGACAACAGGGTGCAAACCCAAATGTTCTAAGAATGCCAGACATTGTTGCAATGATGGGAGTGATGCAACCCCTAACACAAATAACTGGACAAATGGTTCAGCTGAACCTAAATCTTGTGCAAAATGTTGGGTAGGTAGCCCAACCCAACAATGACAAGGTCGACACGATACAGGAAAGCAAGGACACTTCAGGGACTTCAAATGATGGGATCTTGAAGTGTTCGATGGGACATCTAATGACCTAGTGGTAGCCGACTGTGGATGTCTTTATTGACGAGATTTTTAGGTGCATGAAGTGTTCGAAAGGACATAGGTCGAGTTGTGCCTATAGGTCGAGTTGTGCCTTTCATGTTGTGTAGTGATACTTAACTATGATGGAAATTAGCCTCCAAAGTGATTGTTGCGGGCGAAGACCAAATCACGTCAATTTAGTTTAAAGAGGCATTCCTTTGGAAATACTTCAAATGGGTGGTGTGATACAAGAAACAATGAGAATTTTTTAGTATAGAGGAAGGAGACAGATCGATAGATGAGTATGAGCGTGTCTTGGTTGGGCTGGGCAAGGAGAATTTTTTAGTATAGAGCAAGTAGATGAGTATGAGAAAGGAGACACTTGAGGATCTCATCATTTGAAGTACTTGCTCTCTAATTTCGTGTTGACATTGCCCTGGTTGGGCTGGGCCACTTGCCTAGCATTTTGCACTAAATTCGGGGTCGTTTGTGAGGATTGCATCACTCCCATCATTGTAGCAATGTTTGACATTCCTGGAGTGTTTTGGGTTTGCACCTTGTTGTCTCGGTGGGGCTTCCAAAATGAGGTCCTTTTGTTACCTCGTAGGCCTTCTTCGACTACCTGTCATTTGTTACCTCGTAGGCCTTCTTCGACTACCTGTCATTCTTTGTCCTCTTTCCAGCCGGAAGATCATTTTGATTCTTAGTCTGCAATTTGCCATATAAATTCACAAGTGGTTTAACAAACATGCTTTATTCTCTATTTTAAATTACAAATGCATATCACTTCACTTATTATAATTGTTGTCTAAACTGCCGTCTTTCTTATTAATTTTTAGAGAATTACAGAAAAGGTAACTAAATCTAAATTAAATCTCTAGTATCTACTAGGTAGCTAAATCTAAATAATAATACCTAGATACCAGATACCAGGTAACTAAATCTAAATAAATCCAAGATAAATTGGGAAGATCAACCACTTCCCTTATTTCCCTGAGATTACACAAATATTCTTCGACACTCCCTAAGCTAAATATCCTTCAACACCCCCTAAGTTGAGTAATAGATATATTTTTCTCAACTTGAGGGGGAGTGACAATGAATGATATCTATTAGTCAACTTGAAGGAGAGTGTCGAAGGATATTTGTGTGATCCCCAAAAGTAGTTGGCCTGCCTAATGTATCTGGTTGGATTTATTTAGATTTAATTACCTAATATCTTGTGATTATTATTTAGATTTAGTTAACTAGTATCATGGGACTATTATTATTATTAAGATTCACTCTTACCTAATATCTAGGGTATTTAGATTATCTAATGATTTAGATTTAGTTAATCTTTCTCCTTTATAAAAGGGACATAATTCTCTGACAACCATCTAATTTAGACTTGCAACAATAACTCAAACAGTGAATCATCATACGACCTACAGCTAGGTTTATACACACATAAATGGATATAGCTTGTAAGTAGTCACAAAGTCTAAAAGCTAAGCTATGATACCAACGGTTAGGGACAACGGATCTTCACAATAGTATGATATTGTCTACTTTATGTTCTAATTTCTTTGCTTTTGGTTCTCCATTTTAAAAAAAGTTATCTTGACTTCATTTGCATTTTAGTGCCGATGCCAATATTGCAGAGATTCGTGTACCTTGGCTTTTTATCCATTTATATGTGTTCTTTTTATCCATTTATATGTGTACTTCTATGTTAACTTTATAGACGAGCTTCATGTTCTTTTATGTTGATTTACTTGAAGTTGTGGCATATTTGTGTTTCAGCTCTTGGATTCCTTCTATTTCCTCCCAAGTCAACGGGAGATTTCATTTAAGTTCCAAGTCTTCGGACCCACTGTATAAAATTATTGCTTACCTATGCCAATTGAATCTTAGGCACTTTTTTTTTTAAGATACAGAAGTAGATGGATTTTAAGGATAGGGATGGTGTGGGTTAAGTAGGAATTAGAAGTACCTACATATCGACTACCTGTCATGCACATACATTTCATTTTATGCGAAGTGTCTCTGTCAGATATAGATACGTCTGGACACACTCAAAACACATGTCGACATACTATTTTACGTGTCTTATATACGTATATATATATATTATATACATCCAATAATTTAAATTGAATTTGACTAACTTGACTTTTTATGCATTTTAGTGGAGTATATTTACTCTTTCTATTCGTCCATTTGTTGATTTGTAATCTCTTTTTCCCCTTCCAATGAACAACAGATGAAAATAGACTTCTTCCTTACAAATCCCTGATGTTAGCATTTTTTTTTTTTTTTTTTTAATGGATTTATACAAACCTAAAGCTATAAAAAGCGGAAAAGGAACTAACAGACTGTGTTTCAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGGTCAGGTTATCGGCAAGTTGCAGCTAATCCCGAAAAGTTGAAGCTTCCCAACCAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGACATCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTACAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAGGGATGATCTACAAAGATCTCCAAGCAGTCGCCATCCTGATAACGGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGATAGGAAGAGGAGCAGGGATAGAGATCACAACAGGGATAGTAGGGGAAAGGATAGGGACAGAGATCGTGATCGAGATAGAGAGGTATAG

mRNA sequence

AGTCCTTTCCTTCGTACGGCGAGATTTCTTCTCTTTGCCGTCTTTCCCTTTTCCGCTCGACAATTTTGCTACTTCATTTCGTTTCCCAACGGTAGATGTCTAGTTGATTTAAAATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTCGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTTTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGTATATGATACATATGGGTCAGGTTATCGGCAAGTTGCAGCTAATCCCGAAAAGTTGAAGCTTCCCAACCAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGACATCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTACAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAGGGATGATCTACAAAGATCTCCAAGCAGTCGCCATCCTGATAACGGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGATAGGAAGAGGAGCAGGGATAGAGATCACAACAGGGATAGTAGGGGAAAGGATAGGGACAGAGATCGTGATCGAGATAGAGAGGTATAG

Coding sequence (CDS)

ATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTCGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTTTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGTATATGATACATATGGGTCAGGTTATCGGCAAGTTGCAGCTAATCCCGAAAAGTTGAAGCTTCCCAACCAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGACATCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTACAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAGGGATGATCTACAAAGATCTCCAAGCAGTCGCCATCCTGATAACGGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGATAGGAAGAGGAGCAGGGATAGAGATCACAACAGGGATAGTAGGGGAAAGGATAGGGACAGAGATCGTGATCGAGATAGAGAGGTATAG

Protein sequence

MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKDEEVYDTYGSGYRQVAANPEKLKLPNQHSGVTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRDSRGKDRDRDRDRDREV

Homology

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BLAST of CmaCh04G022770 vs. Swiss-Prot
Match: PR38B_DANRE (Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-30
Identity = 110/283 (38.87%), Postives = 146/283 (51.59%), Query Frame = 1


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRGP- 73
           L  ++  N+LSS YFK +LY LKTYHEVVDEIY +V+HVEPW          TG C G  
Sbjct: 36  LNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVR 95

Query: 74  --------STAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSP IRA+GF+Y+RY      L +W
Sbjct: 96  GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHSDSPDIRALGFMYIRYTQPPPDLVDW 155

Query: 134 FEPYVKDEEVYDTYGSGYRQVAANPEKLKLPNQHSGVTGETHRIGSEDIARRPPSVKASL 193
           ++ ++ DEE  D    G   +           +    +    RI        P  V+ ++
Sbjct: 156 YDEFLDDEEELDVKAGGGCVMTVGEMLRSFLTKLEWFSTLFPRI--------PVPVQKAI 215

Query: 194 T--VSFGQRAPHRASTRDSSPVRCTLPPSV-----SDRDNRDDLQRSPSSRHPDNGERSR 253
              +    R P +   ++      T  P+       D+      +RSPS R   N  RSR
Sbjct: 216 DQHMKSRPRKPPQKDEQEEEEEEATAAPAADTGRHGDKRRSRTPRRSPSPRKSQN--RSR 275

Query: 254 DRDHDRER-SSDRDHDRKRSRDRDHNRDSRGKDRDRDRDRDRE 270
            R H RER  +  D++ +R RDR   ++  GKDRDRDRDRDRE
Sbjct: 276 SRSHHRERHGASFDYELERERDR-QRKEREGKDRDRDRDRDRE 307

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BLAST of CmaCh04G022770 vs. Swiss-Prot
Match: PR38B_MOUSE (Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.1e-30
Identity = 114/308 (37.01%), Postives = 151/308 (49.03%), Query Frame = 1


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRGP- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 59  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118

Query: 74  --------STAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 178

Query: 134 FEPYVKDEEVYDTYGSG------YRQVAANPEKLK-LPNQHSGVTGETHRIGSEDIARRP 193
           FE ++ DEE  D    G         + +   KL+        +     +   + I  RP
Sbjct: 179 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRP 238

Query: 194 PSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSR 253
             +K        +   H    R  SP R +L P  S R +     RS S     +G  S 
Sbjct: 239 RKIKKDGKEGIEEIDRHVERRRSRSP-RRSLSPRRSPRRS-----RSRSHHREGHGSSSF 298

Query: 254 DRDHDRER--------SSDRDHDRKRS------------------RDRDHNRDSRGKDRD 270
           DR+ +RE+        + +R+ +R+RS                  R R  +RD +G  RD
Sbjct: 299 DRELEREKERQRLEREAKEREKERRRSRSIDRGLDRRRSRSRERHRSRSRSRDRKGDRRD 358

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BLAST of CmaCh04G022770 vs. Swiss-Prot
Match: PR38B_RAT (Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-29
Identity = 114/308 (37.01%), Postives = 151/308 (49.03%), Query Frame = 1


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRGP- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  --------STAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

Query: 134 FEPYVKDEEVYDTYGSG------YRQVAANPEKLK-LPNQHSGVTGETHRIGSEDIARRP 193
           FE ++ DEE  D    G         + +   KL+        +     +   + I  RP
Sbjct: 178 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRP 237

Query: 194 PSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSR 253
             +K        +   H    R  SP R +L P  S R +     RS S     +G  S 
Sbjct: 238 RKIKKDGKEGVEEIDRHIERRRSRSP-RRSLSPRRSPRRS-----RSRSHHRDGHGSSSF 297

Query: 254 DRDHDRER--------SSDRDHDRKRS------------------RDRDHNRDSRGKDRD 270
           DR+ +RE+        + +R+ +R+RS                  R R  +RD +G  RD
Sbjct: 298 DRELEREKERQRLEREAKEREKERRRSRSLDRGLDRRRSRSRERHRSRSRSRDRKGDRRD 357

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BLAST of CmaCh04G022770 vs. Swiss-Prot
Match: PR38B_HUMAN (Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-29
Identity = 114/308 (37.01%), Postives = 151/308 (49.03%), Query Frame = 1


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRGP- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  --------STAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

Query: 134 FEPYVKDEEVYDTYGSG------YRQVAANPEKLK-LPNQHSGVTGETHRIGSEDIARRP 193
           FE ++ DEE  D    G         + +   KL+        +     +   + I  RP
Sbjct: 178 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRP 237

Query: 194 PSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSR 253
             +K        +   H    R  SP R +L P  S R +     RS S     +G  S 
Sbjct: 238 RKIKKDGKEGAEEIDRHVERRRSRSP-RRSLSPRRSPRRS-----RSRSHHREGHGSSSF 297

Query: 254 DRDHDRER--------SSDRDHDRKRS------------------RDRDHNRDSRGKDRD 270
           DR+ +RE+        + +R+ +R+RS                  R R  +RD +G  RD
Sbjct: 298 DRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGDRRD 357

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BLAST of CmaCh04G022770 vs. TrEMBL
Match: A0A0D2QSW4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G064700 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 2.0e-100
Identity = 206/290 (71.03%), Postives = 226/290 (77.93%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+TCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRAIGFLYLRY AD KTLW+WFEPY+K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYAADPKTLWSWFEPYIK 120

Query: 121 DEEVYDTYGSG-------------YRQVAANPEKLKLPNQHSGVTGETHRIGSEDIARRP 180
           DEE +    SG               QV +N EK+KLP + SG TG+ +R GS+D ARRP
Sbjct: 121 DEEEFSPGSSGRMTTMGVYVRDLLLGQVTSNLEKMKLPTKPSGSTGDNNRHGSDDTARRP 180

Query: 181 PSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHP------- 240
           PSVKA+L+VSFGQRAPHRASTRDSSPVR TLPPS  DR + DD +RSPS R         
Sbjct: 181 PSVKAALSVSFGQRAPHRASTRDSSPVRRTLPPSPYDRSSGDDARRSPSHRRSQSRDREY 240

Query: 241 DNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRD-SRGKDRDRDRDRDRE 270
            + +R R+RD DRER   RD DR   RDRD  RD SR +DRDRD DR+RE
Sbjct: 241 SDKDRDRNRDRDRERERSRDQDRGWGRDRDRERDRSRDRDRDRDWDRNRE 290

[Close]

BLAST of CmaCh04G022770 vs. TrEMBL
Match: A0A151S0K7_CAJCA (Pre-mRNA-splicing factor 38B OS=Cajanus cajan GN=KK1_029949 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 2.2e-99
Identity = 203/298 (68.12%), Postives = 227/298 (76.17%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+TCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRY AD KTLWNWFEPY+K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYCADPKTLWNWFEPYIK 120

Query: 121 DEEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSG 180
           D+E +    +G                               RQV ++ EK+KLP  HSG
Sbjct: 121 DDEEFSPGSNGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSHLEKMKLPTTHSG 180

Query: 181 VTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
            TGE+ R GS+D ARRPPSVKA+L+VSFGQRAPHRASTRDSSP+R TLP    +R+  DD
Sbjct: 181 STGESTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPS--HERNGSDD 240

Query: 241 LQRSPSSRHPDNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRDSRGKDRDRDRDRDR 269
           ++RSP+SR   + E   DRD DRERS  RD +R R RDRDH+RD   +DRDRDRDRDR
Sbjct: 241 IRRSPTSRRSQSREYP-DRDRDRERSRSRDRERDRDRDRDHDRD---RDRDRDRDRDR 292

[Close]

BLAST of CmaCh04G022770 vs. TrEMBL
Match: F6HI04_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0043g00270 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 2.2e-99
Identity = 210/314 (66.88%), Postives = 231/314 (73.57%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+T GK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTSGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRY  D KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYAGDPKTLWNWFEPYVK 120

Query: 121 DEEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSG 180
           DEE +    +G                               RQ+ AN EK+KLP++H+G
Sbjct: 121 DEEEFSPGSTGRMTTMGAYVRDLLLGQYYFDTLFPRIPVPIMRQIVANLEKMKLPSKHAG 180

Query: 181 VTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVS--DRDNR 240
           VTG+T R GS+D ARRPPSVKA+L+VSFGQRAPHRASTRDSSPVR TLPP     DR++ 
Sbjct: 181 VTGDTTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRTLPPPPPSYDRNSS 240

Query: 241 DDLQRSPSSRHPDNGE--------RSRDRDHDRERSSDRDHDRKRSRDRD--HNRD---S 270
           DDL+RSPSSR   + E        R RDR   RE   DRDHDR+R R+RD   NRD    
Sbjct: 241 DDLRRSPSSRRSQSRELSDREYSDRDRDRGKSRELDRDRDHDRERDRERDRTRNRDKDRD 300

[Close]

BLAST of CmaCh04G022770 vs. TrEMBL
Match: A0A0D2R045_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G064700 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.9e-99
Identity = 207/307 (67.43%), Postives = 227/307 (73.94%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+TCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRAIGFLYLRY AD KTLW+WFEPY+K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYAADPKTLWSWFEPYIK 120

Query: 121 DEEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSG 180
           DEE +    SG                               RQV +N EK+KLP + SG
Sbjct: 121 DEEEFSPGSSGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVTSNLEKMKLPTKPSG 180

Query: 181 VTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
            TG+ +R GS+D ARRPPSVKA+L+VSFGQRAPHRASTRDSSPVR TLPPS  DR + DD
Sbjct: 181 STGDNNRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRTLPPSPYDRSSGDD 240

Query: 241 LQRSPSSRHP-------DNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRD-SRGKDRDR 270
            +RSPS R          + +R R+RD DRER   RD DR   RDRD  RD SR +DRDR
Sbjct: 241 ARRSPSHRRSQSRDREYSDKDRDRNRDRDRERERSRDQDRGWGRDRDRERDRSRDRDRDR 300

[Close]

BLAST of CmaCh04G022770 vs. TrEMBL
Match: A0A0S3RL76_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G098000 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 3.2e-98
Identity = 203/303 (67.00%), Postives = 227/303 (74.92%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEI+TCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRY  D KTLW+WFEPY+K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYCGDPKTLWSWFEPYIK 120

Query: 121 DEEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSG 180
           DEE +    +G                               RQV +N EKLKLP  HSG
Sbjct: 121 DEEEFSPGSNGRMTTMGVYIRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPTTHSG 180

Query: 181 VTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
            TGE+ R GS+D ARRPPSVKA+L+VSFGQRAPHRASTRDSSP+R TLP    +R+  DD
Sbjct: 181 STGESTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPIRRTLPS--HERNGSDD 240

Query: 241 LQRSPSSRHPDNGE---RSRDRDHDRERSSDRDHDRKRSRDRDHNRD-SRGKDRDRDRDR 270
           ++RSPSSR   + E   R RDR+  R R  DRDHDR R R+R+ +RD  R +DR RDRDR
Sbjct: 241 IRRSPSSRRSQSREYPDRDRDRERSRSRDRDRDHDRDRDRERERDRDRERDRDRYRDRDR 300

[Close]

BLAST of CmaCh04G022770 vs. TAIR10
Match: AT5G37370.1 (AT5G37370.1 PRP38 family protein)

HSP 1 Score: 310.8 bits (795), Expect = 8.0e-85
Identity = 179/297 (60.27%), Postives = 212/297 (71.38%), Query Frame = 1


Query: 2   EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+A +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W+EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSGV 181
           +E +    +G                               RQ+ +N EK+ LP + SG 
Sbjct: 123 DEEFSPGSNGRMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGS 182

Query: 182 TGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDL 241
           TG+  R GSED ARRPPSVKASL+VSFGQRAPHRASTR SSPVR   PP+  DR+  D++
Sbjct: 183 TGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVR-RPPPTGYDRNGGDEV 242

Query: 242 -QRSPSSRHPDNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRDSRGKDRDRDRDRD 268
            QRSP         RS+ RD+  +R SDR  +R+R +DR+     RG+DR R+R+RD
Sbjct: 243 QQRSP--------RRSQSRDYYSDRDSDRQREREREKDRER---ERGRDRYRERERD 286

[Close]

BLAST of CmaCh04G022770 vs. TAIR10
Match: AT2G40650.1 (AT2G40650.1 PRP38 family protein)

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-07
Identity = 73/264 (27.65%), Postives = 114/264 (43.18%), Query Frame = 1


Query: 12  SLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYK 71
           +L+EK++   I    ++KE     T   +VD+   ++DH+     G+ R P+   CL+ K
Sbjct: 19  NLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAM-ELDHLGGTFGGS-RKPTPFLCLILK 78

Query: 72  FFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKDEEVYDTYGSG 131
              ++   + +   +K++D  Y+R +G  YLR       ++ + EP   D          
Sbjct: 79  MLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYLEPLYND---------- 138

Query: 132 YRQVAA--NPEKLKLPNQHSGVTGETHRIGSEDIARRPPSVKASLTVSF-GQRAPHRAST 191
           YR+V    +  K  L +    +     +  S DIA   P +K   T+   G   P ++  
Sbjct: 139 YRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAM--PRLKKRWTLEQNGLLEPRKSVL 198

Query: 192 RDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSRDRDHDRERSSDRDHDRKRSRD 251
            D          +    D  +D             ER RDR  D  R  DRD+DR    D
Sbjct: 199 EDDFEEEEEKEENEGIADGSEDEMDQRRKSPERERERDRDRRRDSHRHRDRDYDRDYDMD 258

Query: 252 RDHNRD---SRGKDRDRDRDRDRE 270
           RDH+RD    RG  RDRDR+RDR+
Sbjct: 259 RDHDRDYERERGHGRDRDRERDRD 268

[Close]

BLAST of CmaCh04G022770 vs. NCBI nr
Match: gi|659126372|ref|XP_008463149.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X4 [Cucumis melo])

HSP 1 Score: 417.5 bits (1072), Expect = 1.7e-113
Identity = 228/306 (74.51%), Postives = 248/306 (81.05%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSG 180
           D+E +     G                               RQV +N EKLKLP++HSG
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSED ARRPPSVKASL+VSFGQRAPHRASTRDSSPVR TLP SV+DRD  DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRD-SRGKDRDRD 270
           L+RSPS+R      HPD+ ERSRDR++DRERS DRD+DR+RSRDRD++R+ SR +D DR+
Sbjct: 241 LRRSPSNRRSQSREHPDSRERSRDREYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRE 300

[Close]

BLAST of CmaCh04G022770 vs. NCBI nr
Match: gi|659126368|ref|XP_008463147.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X2 [Cucumis melo])

HSP 1 Score: 417.5 bits (1072), Expect = 1.7e-113
Identity = 228/306 (74.51%), Postives = 248/306 (81.05%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSG 180
           D+E +     G                               RQV +N EKLKLP++HSG
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSED ARRPPSVKASL+VSFGQRAPHRASTRDSSPVR TLP SV+DRD  DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRD-SRGKDRDRD 270
           L+RSPS+R      HPD+ ERSRDR++DRERS DRD+DR+RSRDRD++R+ SR +D DR+
Sbjct: 241 LRRSPSNRRSQSREHPDSRERSRDREYDRERSRDRDYDRERSRDRDYDRERSRDRDYDRE 300

[Close]

BLAST of CmaCh04G022770 vs. NCBI nr
Match: gi|659126374|ref|XP_008463150.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X5 [Cucumis melo])

HSP 1 Score: 416.0 bits (1068), Expect = 5.0e-113
Identity = 227/306 (74.18%), Postives = 248/306 (81.05%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSG 180
           D+E +     G                               RQV +N EKLKLP++HSG
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSED ARRPPSVKASL+VSFGQRAPHRASTRDSSPVR TLP SV+DRD  DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRD-SRGKDRDRD 270
           L+RSPS+R      HPD+ ERSRDR++DRERS DR++DR+RSRDRD++R+ SR +D DR+
Sbjct: 241 LRRSPSNRRSQSREHPDSRERSRDREYDRERSRDREYDRERSRDRDYDRERSRDRDYDRE 300

[Close]

BLAST of CmaCh04G022770 vs. NCBI nr
Match: gi|659126362|ref|XP_008463144.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Cucumis melo])

HSP 1 Score: 416.0 bits (1068), Expect = 5.0e-113
Identity = 227/306 (74.18%), Postives = 248/306 (81.05%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSG 180
           D+E +     G                               RQV +N EKLKLP++HSG
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSED ARRPPSVKASL+VSFGQRAPHRASTRDSSPVR TLP SV+DRD  DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRD-SRGKDRDRD 270
           L+RSPS+R      HPD+ ERSRDR++DRERS DR++DR+RSRDRD++R+ SR +D DR+
Sbjct: 241 LRRSPSNRRSQSREHPDSRERSRDREYDRERSRDREYDRERSRDRDYDRERSRDRDYDRE 300

[Close]

BLAST of CmaCh04G022770 vs. NCBI nr
Match: gi|659126370|ref|XP_008463148.1| (PREDICTED: pre-mRNA-splicing factor 38B isoform X3 [Cucumis melo])

HSP 1 Score: 416.0 bits (1068), Expect = 5.0e-113
Identity = 227/306 (74.18%), Postives = 248/306 (81.05%), Query Frame = 1


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEVYDTYGSG------------------------------YRQVAANPEKLKLPNQHSG 180
           D+E +     G                               RQV +N EKLKLP++HSG
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDIARRPPSVKASLTVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSED ARRPPSVKASL+VSFGQRAPHRASTRDSSPVR TLP SV+DRD  DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHDRKRSRDRDHNRD-SRGKDRDRD 270
           L+RSPS+R      HPD+ ERSRDR++DRERS DR++DR+RSRDRD++R+ SR +D DR+
Sbjct: 241 LRRSPSNRRSQSREHPDSRERSRDREYDRERSRDREYDRERSRDRDYDRERSRDRDYDRE 300

The following BLAST results are available for this feature:

BLAST of CmaCh04G022770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PR38B_DANRE	1.1e-30	38.87	Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1	[more]
PR38B_MOUSE	9.1e-30	37.01	Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1	[more]
PR38B_RAT	1.2e-29	37.01	Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=1 SV=1	[more]
PR38B_HUMAN	1.5e-29	37.01	Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1	[more]

BLAST of CmaCh04G022770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2QSW4_GOSRA	2.0e-100	71.03	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G064700 PE=4 SV=1	[more]
A0A151S0K7_CAJCA	2.2e-99	68.12	Pre-mRNA-splicing factor 38B OS=Cajanus cajan GN=KK1_029949 PE=4 SV=1	[more]
F6HI04_VITVI	2.2e-99	66.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0043g00270 PE=4 SV=...	[more]
A0A0D2R045_GOSRA	2.9e-99	67.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G064700 PE=4 SV=1	[more]
A0A0S3RL76_PHAAN	3.2e-98	67.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G098000 PE=...	[more]

BLAST of CmaCh04G022770 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37370.1	8.0e-85	60.27	PRP38 family protein	[more]
AT2G40650.1	8.8e-07	27.65	PRP38 family protein	[more]

BLAST of CmaCh04G022770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126372\|ref\|XP_008463149.1\|	1.7e-113	74.51	PREDICTED: pre-mRNA-splicing factor 38B isoform X4 [Cucumis melo]	[more]
gi\|659126368\|ref\|XP_008463147.1\|	1.7e-113	74.51	PREDICTED: pre-mRNA-splicing factor 38B isoform X2 [Cucumis melo]	[more]
gi\|659126374\|ref\|XP_008463150.1\|	5.0e-113	74.18	PREDICTED: pre-mRNA-splicing factor 38B isoform X5 [Cucumis melo]	[more]
gi\|659126362\|ref\|XP_008463144.1\|	5.0e-113	74.18	PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Cucumis melo]	[more]
gi\|659126370\|ref\|XP_008463148.1\|	5.0e-113	74.18	PREDICTED: pre-mRNA-splicing factor 38B isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005037	PRP38
IPR024767	PRP38_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G022770.1	CmaCh04G022770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 1..269 score: 8.1E
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 11..123 score: 1.7
IPR024767	Pre-mRNA-splicing factor 38, C-terminal	PFAM	PF12871	PRP38_assoc	coord: 157..239 score: 2.
None	No IPR available	PANTHER	PTHR23142:SF3	SUBFAMILY NOT NAMED	coord: 1..269 score: 8.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G022770	Cla009142	Watermelon (97103) v1	cmawmB711
CmaCh04G022770	Csa5G348070	Cucumber (Chinese Long) v2	cmacuB731
CmaCh04G022770	MELO3C025080	Melon (DHL92) v3.5.1	cmameB635
CmaCh04G022770	ClCG01G008650	Watermelon (Charleston Gray)	cmawcgB634
CmaCh04G022770	CSPI05G13720	Wild cucumber (PI 183967)	cmacpiB746
CmaCh04G022770	CmoCh15G007870	Cucurbita moschata (Rifu)	cmacmoB693
CmaCh04G022770	CmoCh04G023810	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G022770	Lsi09G009050	Bottle gourd (USVL1VR-Ls)	cmalsiB622
CmaCh04G022770	Cp4.1LG13g05370	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G022770	Cp4.1LG01g19710	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G022770	MELO3C025080.2	Melon (DHL92) v3.6.1	cmamedB721
CmaCh04G022770	CsaV3_5G020660	Cucumber (Chinese Long) v3	cmacucB0868
CmaCh04G022770	Cla97C01G008890	Watermelon (97103) v2	cmawmbB705
CmaCh04G022770	Bhi12G001044	Wax gourd	cmawgoB0827
CmaCh04G022770	CsGy5G013630	Cucumber (Gy14) v2	cgybcmaB654
CmaCh04G022770	Carg01445	Silver-seed gourd	carcmaB1150
CmaCh04G022770	Carg18286	Silver-seed gourd	carcmaB0738

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G022770	CmaCh15G007610	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G022770	Cucumber (Gy14) v1	cgycmaB0749
CmaCh04G022770	Melon (DHL92) v3.5.1	cmameB625
CmaCh04G022770	Melon (DHL92) v3.6.1	cmamedB711
CmaCh04G022770	Melon (DHL92) v3.6.1	cmamedB722
CmaCh04G022770	Cucumber (Chinese Long) v3	cmacucB0887