CSPI01G03080 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G03080
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 1939368 .. 1939838 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCATTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGAAAAGTTTGGGGGATTTATAGATTGA

mRNA sequence

ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCATTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGAAAAGTTTGGGGGATTTATAGATTGA

Coding sequence (CDS)

ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCATTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGAAAAGTTTGGGGGATTTATAGATTGA

Homology

[Close]

BLAST of CSPI01G03080 vs. TrEMBL
Match: A0A0A0LRV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-82
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP
Sbjct: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPEKFGGFID 157
           NPKAAYHRSCLNEWHPQVFHFISNSYCP+KFGGFID
Sbjct: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 156

[Close]

BLAST of CSPI01G03080 vs. TrEMBL
Match: W9RJI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-22
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISF +PDR+  EI+DKK++ G HP+RITRVP GGP  FH IV+EA K S PLK    
Sbjct: 12  KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARKESQPLKKHCD 71

Query: 117 --GKPPNPKAAYHRSCLNEWHPQVFH 141
                PNPK AYHRS +N+WHPQVF+
Sbjct: 72  IVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]

BLAST of CSPI01G03080 vs. TrEMBL
Match: G7KP67_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.5e-19
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPL----- 116
           KFGI+FTIPDR+ +EI+DKKRI G +PLRITR+P GGP EFH +V+EAEKGS+ +     
Sbjct: 14  KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEKGSSTILTLKK 73

Query: 117 KNQQKGKPPNPKAAYHRSCLNEWHPQVFHFIS 144
           KN    K  + K AYHR+  N+W   VF+F S
Sbjct: 74  KNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

[Close]

BLAST of CSPI01G03080 vs. TrEMBL
Match: A0A0B2Q3Z7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISFT+PDR+  EI+DKKR+ G HPLRITR+P GGP EFH I++E EKG +     +K
Sbjct: 14  KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEKGPSSTLTLKK 73

Query: 117 GKP-----------PNPKAAYHRSCLNEWHPQVFHF 142
            K             + K AYHRS  N+W+ QVF+F
Sbjct: 74  RKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]

BLAST of CSPI01G03080 vs. TrEMBL
Match: K7MX31_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISFT+PDR+  EI+DKKR+ G HPLRITR+P GGP EFH I++E EKG +     +K
Sbjct: 14  KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEKGPSSTLTLKK 73

Query: 117 GKP-----------PNPKAAYHRSCLNEWHPQVFHF 142
            K             + K AYHRS  N+W+ QVF+F
Sbjct: 74  RKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]

BLAST of CSPI01G03080 vs. NCBI nr
Match: gi|700208653|gb|KGN63749.1| (hypothetical protein Csa_1G014460 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 2.0e-82
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP
Sbjct: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPEKFGGFID 157
           NPKAAYHRSCLNEWHPQVFHFISNSYCP+KFGGFID
Sbjct: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 156

[Close]

BLAST of CSPI01G03080 vs. NCBI nr
Match: gi|703108408|ref|XP_010099022.1| (hypothetical protein L484_005314 [Morus notabilis])

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISF +PDR+  EI+DKK++ G HP+RITRVP GGP  FH IV+EA K S PLK    
Sbjct: 12  KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARKESQPLKKHCD 71

Query: 117 --GKPPNPKAAYHRSCLNEWHPQVFH 141
                PNPK AYHRS +N+WHPQVF+
Sbjct: 72  IVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]

BLAST of CSPI01G03080 vs. NCBI nr
Match: gi|357497249|ref|XP_003618913.1| (hypothetical protein MTR_6g026830 [Medicago truncatula])

HSP 1 Score: 102.1 bits (253), Expect = 9.3e-19
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPL----- 116
           KFGI+FTIPDR+ +EI+DKKRI G +PLRITR+P GGP EFH +V+EAEKGS+ +     
Sbjct: 14  KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEKGSSTILTLKK 73

Query: 117 KNQQKGKPPNPKAAYHRSCLNEWHPQVFHFIS 144
           KN    K  + K AYHR+  N+W   VF+F S
Sbjct: 74  KNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

[Close]

BLAST of CSPI01G03080 vs. NCBI nr
Match: gi|734362704|gb|KHN16266.1| (hypothetical protein glysoja_048928 [Glycine soja])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISFT+PDR+  EI+DKKR+ G HPLRITR+P GGP EFH I++E EKG +     +K
Sbjct: 14  KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEKGPSSTLTLKK 73

Query: 117 GKP-----------PNPKAAYHRSCLNEWHPQVFHF 142
            K             + K AYHRS  N+W+ QVF+F
Sbjct: 74  RKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

The following BLAST results are available for this feature:

BLAST of CSPI01G03080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G03080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRV9_CUCSA	1.4e-82	99.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1	[more]
W9RJI5_9ROSA	2.8e-22	61.63	Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1	[more]
G7KP67_MEDTR	6.5e-19	56.52	Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1	[more]
A0A0B2Q3Z7_GLYSO	1.1e-18	52.08	Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1	[more]
K7MX31_SOYBN	1.1e-18	52.08	Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1	[more]

BLAST of CSPI01G03080 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G03080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208653\|gb\|KGN63749.1\|	2.0e-82	99.36	hypothetical protein Csa_1G014460 [Cucumis sativus]	[more]
gi\|703108408\|ref\|XP_010099022.1\|	4.0e-22	61.63	hypothetical protein L484_005314 [Morus notabilis]	[more]
gi\|357497249\|ref\|XP_003618913.1\|	9.3e-19	56.52	hypothetical protein MTR_6g026830 [Medicago truncatula]	[more]
gi\|734362704\|gb\|KHN16266.1\|	1.6e-18	52.08	hypothetical protein glysoja_048928 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G03080.1	CSPI01G03080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 26..46 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G03080	Cla019018	Watermelon (97103) v1	cpiwmB089
CSPI01G03080	Csa1G014460	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G03080	ClCG06G015250	Watermelon (Charleston Gray)	cpiwcgB074
CSPI01G03080	CsaV3_1G003140	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G03080	Cla97C06G124770	Watermelon (97103) v2	cpiwmbB071
CSPI01G03080	Bhi02G000027	Wax gourd	cpiwgoB082
CSPI01G03080	CmaCh10G002680	Cucurbita maxima (Rimu)	cmacpiB052
CSPI01G03080	CmoCh10G002850	Cucurbita moschata (Rifu)	cmocpiB043
CSPI01G03080	Cp4.1LG18g07320	Cucurbita pepo (Zucchini)	cpecpiB364
CSPI01G03080	CsGy1G003070	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G03080	Cucurbita pepo (Zucchini)	cpecpiB029
CSPI01G03080	Cucurbita pepo (Zucchini)	cpecpiB353
CSPI01G03080	Cucurbita pepo (Zucchini)	cpecpiB512
CSPI01G03080	Cucurbita pepo (Zucchini)	cpecpiB642
CSPI01G03080	Bottle gourd (USVL1VR-Ls)	cpilsiB024
CSPI01G03080	Bottle gourd (USVL1VR-Ls)	cpilsiB042
CSPI01G03080	Bottle gourd (USVL1VR-Ls)	cpilsiB062
CSPI01G03080	Melon (DHL92) v3.6.1	cpimedB019
CSPI01G03080	Melon (DHL92) v3.6.1	cpimedB040
CSPI01G03080	Melon (DHL92) v3.6.1	cpimedB049
CSPI01G03080	Cucumber (Gy14) v2	cgybcpiB004
CSPI01G03080	Silver-seed gourd	carcpiB0420
CSPI01G03080	Silver-seed gourd	carcpiB0497
CSPI01G03080	Silver-seed gourd	carcpiB0500
CSPI01G03080	Silver-seed gourd	carcpiB0550
CSPI01G03080	Silver-seed gourd	carcpiB0626
CSPI01G03080	Silver-seed gourd	carcpiB0628
CSPI01G03080	Cucumber (Chinese Long) v3	cpicucB003
CSPI01G03080	Watermelon (97103) v2	cpiwmbB054
CSPI01G03080	Watermelon (97103) v2	cpiwmbB056
CSPI01G03080	Wax gourd	cpiwgoB043
CSPI01G03080	Wild cucumber (PI 183967)	cpicpiB000
CSPI01G03080	Wild cucumber (PI 183967)	cpicpiB004
CSPI01G03080	Cucumber (Gy14) v1	cgycpiB138
CSPI01G03080	Cucumber (Gy14) v1	cgycpiB140
CSPI01G03080	Cucumber (Gy14) v1	cgycpiB310
CSPI01G03080	Cucurbita maxima (Rimu)	cmacpiB070
CSPI01G03080	Cucurbita maxima (Rimu)	cmacpiB086
CSPI01G03080	Cucurbita maxima (Rimu)	cmacpiB101
CSPI01G03080	Cucurbita maxima (Rimu)	cmacpiB397
CSPI01G03080	Cucurbita moschata (Rifu)	cmocpiB079
CSPI01G03080	Cucurbita moschata (Rifu)	cmocpiB093
CSPI01G03080	Cucurbita moschata (Rifu)	cmocpiB203
CSPI01G03080	Cucurbita moschata (Rifu)	cmocpiB388
CSPI01G03080	Cucumber (Chinese Long) v2	cpicuB005
CSPI01G03080	Cucumber (Chinese Long) v2	cpicuB011
CSPI01G03080	Melon (DHL92) v3.5.1	cpimeB020
CSPI01G03080	Melon (DHL92) v3.5.1	cpimeB046
CSPI01G03080	Watermelon (Charleston Gray)	cpiwcgB058
CSPI01G03080	Watermelon (Charleston Gray)	cpiwcgB060
CSPI01G03080	Watermelon (97103) v1	cpiwmB065
CSPI01G03080	Watermelon (97103) v1	cpiwmB067