CSPI01G03080.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G03080.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 1939368 .. 1939838 (+)
Sequence length471
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCATTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGAAAAGTTTGGGGGATTTATAGATTGA

mRNA sequence

ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCATTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGAAAAGTTTGGGGGATTTATAGATTGA

Coding sequence (CDS)

ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCATTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGAAAAGTTTGGGGGATTTATAGATTGA
Homology
[Close]
BLAST of CSPI01G03080.1 vs. TrEMBL
Match: A0A0A0LRV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-82
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP
Sbjct: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPEKFGGFID 157
           NPKAAYHRSCLNEWHPQVFHFISNSYCP+KFGGFID
Sbjct: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 156

[Close]
BLAST of CSPI01G03080.1 vs. TrEMBL
Match: W9RJI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-22
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISF +PDR+  EI+DKK++ G HP+RITRVP GGP  FH IV+EA K S PLK    
Sbjct: 12  KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARKESQPLKKHCD 71

Query: 117 --GKPPNPKAAYHRSCLNEWHPQVFH 141
                PNPK AYHRS +N+WHPQVF+
Sbjct: 72  IVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]
BLAST of CSPI01G03080.1 vs. TrEMBL
Match: G7KP67_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.5e-19
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPL----- 116
           KFGI+FTIPDR+ +EI+DKKRI G +PLRITR+P GGP EFH +V+EAEKGS+ +     
Sbjct: 14  KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEKGSSTILTLKK 73

Query: 117 KNQQKGKPPNPKAAYHRSCLNEWHPQVFHFIS 144
           KN    K  + K AYHR+  N+W   VF+F S
Sbjct: 74  KNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

[Close]
BLAST of CSPI01G03080.1 vs. TrEMBL
Match: A0A0B2Q3Z7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISFT+PDR+  EI+DKKR+ G HPLRITR+P GGP EFH I++E EKG +     +K
Sbjct: 14  KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEKGPSSTLTLKK 73

Query: 117 GKP-----------PNPKAAYHRSCLNEWHPQVFHF 142
            K             + K AYHRS  N+W+ QVF+F
Sbjct: 74  RKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]
BLAST of CSPI01G03080.1 vs. TrEMBL
Match: K7MX31_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISFT+PDR+  EI+DKKR+ G HPLRITR+P GGP EFH I++E EKG +     +K
Sbjct: 14  KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEKGPSSTLTLKK 73

Query: 117 GKP-----------PNPKAAYHRSCLNEWHPQVFHF 142
            K             + K AYHRS  N+W+ QVF+F
Sbjct: 74  RKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]
BLAST of CSPI01G03080.1 vs. NCBI nr
Match: gi|700208653|gb|KGN63749.1| (hypothetical protein Csa_1G014460 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 2.0e-82
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP
Sbjct: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPEKFGGFID 157
           NPKAAYHRSCLNEWHPQVFHFISNSYCP+KFGGFID
Sbjct: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 156

[Close]
BLAST of CSPI01G03080.1 vs. NCBI nr
Match: gi|703108408|ref|XP_010099022.1| (hypothetical protein L484_005314 [Morus notabilis])

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISF +PDR+  EI+DKK++ G HP+RITRVP GGP  FH IV+EA K S PLK    
Sbjct: 12  KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARKESQPLKKHCD 71

Query: 117 --GKPPNPKAAYHRSCLNEWHPQVFH 141
                PNPK AYHRS +N+WHPQVF+
Sbjct: 72  IVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]
BLAST of CSPI01G03080.1 vs. NCBI nr
Match: gi|357497249|ref|XP_003618913.1| (hypothetical protein MTR_6g026830 [Medicago truncatula])

HSP 1 Score: 102.1 bits (253), Expect = 9.3e-19
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPL----- 116
           KFGI+FTIPDR+ +EI+DKKRI G +PLRITR+P GGP EFH +V+EAEKGS+ +     
Sbjct: 14  KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEKGSSTILTLKK 73

Query: 117 KNQQKGKPPNPKAAYHRSCLNEWHPQVFHFIS 144
           KN    K  + K AYHR+  N+W   VF+F S
Sbjct: 74  KNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

[Close]
BLAST of CSPI01G03080.1 vs. NCBI nr
Match: gi|734362704|gb|KHN16266.1| (hypothetical protein glysoja_048928 [Glycine soja])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISFT+PDR+  EI+DKKR+ G HPLRITR+P GGP EFH I++E EKG +     +K
Sbjct: 14  KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEKGPSSTLTLKK 73

Query: 117 GKP-----------PNPKAAYHRSCLNEWHPQVFHF 142
            K             + K AYHRS  N+W+ QVF+F
Sbjct: 74  RKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

The following BLAST results are available for this feature:
BLAST of CSPI01G03080.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G03080.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRV9_CUCSA1.4e-8299.36Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1[more]
W9RJI5_9ROSA2.8e-2261.63Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1[more]
G7KP67_MEDTR6.5e-1956.52Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1[more]
A0A0B2Q3Z7_GLYSO1.1e-1852.08Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1[more]
K7MX31_SOYBN1.1e-1852.08Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1[more]
BLAST of CSPI01G03080.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G03080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208653|gb|KGN63749.1|2.0e-8299.36hypothetical protein Csa_1G014460 [Cucumis sativus][more]
gi|703108408|ref|XP_010099022.1|4.0e-2261.63hypothetical protein L484_005314 [Morus notabilis][more]
gi|357497249|ref|XP_003618913.1|9.3e-1956.52hypothetical protein MTR_6g026830 [Medicago truncatula][more]
gi|734362704|gb|KHN16266.1|1.6e-1852.08hypothetical protein glysoja_048928 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G03080CSPI01G03080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G03080.1CSPI01G03080.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G03080.1.cds1CSPI01G03080.1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 26..46
scor