CmoCh10G002850 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G002850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr10 : 1268934 .. 1269380 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAACAAGAGGTAAACACTCAAAGACAAAGAGGGGTCAAGCTCGAGCAATAGCGAAGCAGTTCGAAGTGAAGAATCTGTCGATAAGGCAAAAACTTGGCCTCACAGAGAAGCCTGCAAAGGTCTCAAAGGAAGGAATGGGGTTTTTCATTAGAAGAACTCTGCCTCGGAAGTTTGGTATATCATTCACAATTCCAGACCGAATGGCCACAGAGATCAATGACAAGAGGAGGATAAGTGGCTTACACCCTCTGAGAATCACCAGAGTCCCATCTGGTGGACCGATGGAGTTTCATGCAGTTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAGCAAGGCAGGCCACCAAATCCTAAAGTAGCATATCATAGGAGCCGCTTGAATGAGTGGCATCCCCAAGTGTTTCATTTCATCTCTGATTATTGTTAA

mRNA sequence

ATGGCCAAAACAAGAGGTAAACACTCAAAGACAAAGAGGGGTCAAGCTCGAGCAATAGCGAAGCAGTTCGAAGTGAAGAATCTGTCGATAAGGCAAAAACTTGGCCTCACAGAGAAGCCTGCAAAGGTCTCAAAGGAAGGAATGGGGTTTTTCATTAGAAGAACTCTGCCTCGGAAGTTTGGTATATCATTCACAATTCCAGACCGAATGGCCACAGAGATCAATGACAAGAGGAGGATAAGTGGCTTACACCCTCTGAGAATCACCAGAGTCCCATCTGGTGGACCGATGGAGTTTCATGCAGTTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAGCAAGGCAGGCCACCAAATCCTAAAGTAGCATATCATAGGAGCCGCTTGAATGAGTGGCATCCCCAAGTGTTTCATTTCATCTCTGATTATTGTTAA

Coding sequence (CDS)

ATGGCCAAAACAAGAGGTAAACACTCAAAGACAAAGAGGGGTCAAGCTCGAGCAATAGCGAAGCAGTTCGAAGTGAAGAATCTGTCGATAAGGCAAAAACTTGGCCTCACAGAGAAGCCTGCAAAGGTCTCAAAGGAAGGAATGGGGTTTTTCATTAGAAGAACTCTGCCTCGGAAGTTTGGTATATCATTCACAATTCCAGACCGAATGGCCACAGAGATCAATGACAAGAGGAGGATAAGTGGCTTACACCCTCTGAGAATCACCAGAGTCCCATCTGGTGGACCGATGGAGTTTCATGCAGTTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAGCAAGGCAGGCCACCAAATCCTAAAGTAGCATATCATAGGAGCCGCTTGAATGAGTGGCATCCCCAAGTGTTTCATTTCATCTCTGATTATTGTTAA
Homology
[Close]
BLAST of CmoCh10G002850 vs. TrEMBL
Match: A0A0A0LRV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49
Identity = 110/150 (73.33%), Postives = 123/150 (82.00%), Query Frame = 1 

Query: 1   MAKTRGKHSKTK-RGQARAIAKQFEVKNLSIRQKLGLTEKPAKVSKEGMGFFIRRTLPRK 60
           MAKTR K+ K K R +AR IAK+F V+N + RQKL LTEK  + SKE M   +R     K
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERME--VRALHEIK 60

Query: 61  FGISFTIPDRMATEINDKRRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQG 120
           FGISFTIPDRMATEI+DK+RISGLHPLRITRVP GGPMEFH +VKEAEKGSAPLKNQQ+G
Sbjct: 61  FGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKG 120

Query: 121 RPPNPKVAYHRSRLNEWHPQVFHFISD-YC 149
           +PPNPK AYHRS LNEWHPQVFHFIS+ YC
Sbjct: 121 KPPNPKAAYHRSCLNEWHPQVFHFISNSYC 147

[Close]
BLAST of CmoCh10G002850 vs. TrEMBL
Match: W9RJI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-24
Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 1 

Query: 48  MGFFIRRTLPRKFGISFTIPDRMATEINDKRRISGLHPLRITRVPSGGPMEFHAVVKEAE 107
           M F   R  PRKFGISF +PDR+  EI DK+++ G HP+RITRVPSGGP  FH +V+EA 
Sbjct: 1   MDFCSVRAKPRKFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEAR 60

Query: 108 KGSAPLKNQQQ--GRPPNPKVAYHRSRLNEWHPQVFH 143
           K S PLK         PNPK AYHRS +N+WHPQVF+
Sbjct: 61  KESQPLKKHCDIVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]
BLAST of CmoCh10G002850 vs. TrEMBL
Match: K7MX31_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.9e-22
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 1 

Query: 48  MGFFIRRTLPRKFGISFTIPDRMATEINDKRRISGLHPLRITRVPSGGPMEFHAVVKEAE 107
           +G+   R+ PRKFGISFT+PDR+  EINDK+R+ G HPLRITR+PSGGP EFH +++E E
Sbjct: 3   LGYCTIRSTPRKFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVE 62

Query: 108 KG---SAPLKNQQQGRPPNPKV--------AYHRSRLNEWHPQVFHF 144
           KG   +  LK ++     + K         AYHRSR N+W+ QVF+F
Sbjct: 63  KGPSSTLTLKKRKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]
BLAST of CmoCh10G002850 vs. TrEMBL
Match: A0A0B2Q3Z7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.9e-22
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 1 

Query: 48  MGFFIRRTLPRKFGISFTIPDRMATEINDKRRISGLHPLRITRVPSGGPMEFHAVVKEAE 107
           +G+   R+ PRKFGISFT+PDR+  EINDK+R+ G HPLRITR+PSGGP EFH +++E E
Sbjct: 3   LGYCTIRSTPRKFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVE 62

Query: 108 KG---SAPLKNQQQGRPPNPKV--------AYHRSRLNEWHPQVFHF 144
           KG   +  LK ++     + K         AYHRSR N+W+ QVF+F
Sbjct: 63  KGPSSTLTLKKRKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]
BLAST of CmoCh10G002850 vs. TrEMBL
Match: G7KP67_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 1 

Query: 54  RTLPRKFGISFTIPDRMATEINDKRRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPL 113
           R+ PRKFGI+FTIPDR+ +EINDK+RI G +PLRITR+PSGGP EFH +V+EAEKGS+ +
Sbjct: 9   RSRPRKFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEKGSSTI 68

Query: 114 -----KNQQQGRPPNPKVAYHRSRLNEWHPQVFHFIS 146
                KN    +  + K AYHR+R N+W   VF+F S
Sbjct: 69  LTLKKKNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

[Close]
BLAST of CmoCh10G002850 vs. NCBI nr
Match: gi|700208653|gb|KGN63749.1| (hypothetical protein Csa_1G014460 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 2.1e-49
Identity = 110/150 (73.33%), Postives = 123/150 (82.00%), Query Frame = 1 

Query: 1   MAKTRGKHSKTK-RGQARAIAKQFEVKNLSIRQKLGLTEKPAKVSKEGMGFFIRRTLPRK 60
           MAKTR K+ K K R +AR IAK+F V+N + RQKL LTEK  + SKE M   +R     K
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERME--VRALHEIK 60

Query: 61  FGISFTIPDRMATEINDKRRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKNQQQG 120
           FGISFTIPDRMATEI+DK+RISGLHPLRITRVP GGPMEFH +VKEAEKGSAPLKNQQ+G
Sbjct: 61  FGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKG 120

Query: 121 RPPNPKVAYHRSRLNEWHPQVFHFISD-YC 149
           +PPNPK AYHRS LNEWHPQVFHFIS+ YC
Sbjct: 121 KPPNPKAAYHRSCLNEWHPQVFHFISNSYC 147

[Close]
BLAST of CmoCh10G002850 vs. NCBI nr
Match: gi|703108408|ref|XP_010099022.1| (hypothetical protein L484_005314 [Morus notabilis])

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 1 

Query: 48  MGFFIRRTLPRKFGISFTIPDRMATEINDKRRISGLHPLRITRVPSGGPMEFHAVVKEAE 107
           M F   R  PRKFGISF +PDR+  EI DK+++ G HP+RITRVPSGGP  FH +V+EA 
Sbjct: 1   MDFCSVRAKPRKFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEAR 60

Query: 108 KGSAPLKNQQQ--GRPPNPKVAYHRSRLNEWHPQVFH 143
           K S PLK         PNPK AYHRS +N+WHPQVF+
Sbjct: 61  KESQPLKKHCDIVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]
BLAST of CmoCh10G002850 vs. NCBI nr
Match: gi|734362704|gb|KHN16266.1| (hypothetical protein glysoja_048928 [Glycine soja])

HSP 1 Score: 112.1 bits (279), Expect = 8.5e-22
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 1 

Query: 48  MGFFIRRTLPRKFGISFTIPDRMATEINDKRRISGLHPLRITRVPSGGPMEFHAVVKEAE 107
           +G+   R+ PRKFGISFT+PDR+  EINDK+R+ G HPLRITR+PSGGP EFH +++E E
Sbjct: 3   LGYCTIRSTPRKFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVE 62

Query: 108 KG---SAPLKNQQQGRPPNPKV--------AYHRSRLNEWHPQVFHF 144
           KG   +  LK ++     + K         AYHRSR N+W+ QVF+F
Sbjct: 63  KGPSSTLTLKKRKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]
BLAST of CmoCh10G002850 vs. NCBI nr
Match: gi|357497249|ref|XP_003618913.1| (hypothetical protein MTR_6g026830 [Medicago truncatula])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 1 

Query: 54  RTLPRKFGISFTIPDRMATEINDKRRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPL 113
           R+ PRKFGI+FTIPDR+ +EINDK+RI G +PLRITR+PSGGP EFH +V+EAEKGS+ +
Sbjct: 9   RSRPRKFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEKGSSTI 68

Query: 114 -----KNQQQGRPPNPKVAYHRSRLNEWHPQVFHFIS 146
                KN    +  + K AYHR+R N+W   VF+F S
Sbjct: 69  LTLKKKNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

The following BLAST results are available for this feature:
BLAST of CmoCh10G002850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh10G002850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRV9_CUCSA1.5e-4973.33Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1[more]
W9RJI5_9ROSA1.7e-2458.76Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1[more]
K7MX31_SOYBN5.9e-2251.40Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1[more]
A0A0B2Q3Z7_GLYSO5.9e-2251.40Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1[more]
G7KP67_MEDTR1.0e-2157.73Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1[more]
BLAST of CmoCh10G002850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh10G002850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208653|gb|KGN63749.1|2.1e-4973.33hypothetical protein Csa_1G014460 [Cucumis sativus][more]
gi|703108408|ref|XP_010099022.1|2.4e-2458.76hypothetical protein L484_005314 [Morus notabilis][more]
gi|734362704|gb|KHN16266.1|8.5e-2251.40hypothetical protein glysoja_048928 [Glycine soja][more]
gi|357497249|ref|XP_003618913.1|1.4e-2157.73hypothetical protein MTR_6g026830 [Medicago truncatula][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G002850.1CmoCh10G002850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G002850CmaCh10G002680Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G002850Cla019018Watermelon (97103) v1cmowmB061
CmoCh10G002850Csa1G014460Cucumber (Chinese Long) v2cmocuB040
CmoCh10G002850ClCG06G015250Watermelon (Charleston Gray)cmowcgB062
CmoCh10G002850CSPI01G03080Wild cucumber (PI 183967)cmocpiB043
CmoCh10G002850Cp4.1LG18g07320Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G002850CsaV3_1G003140Cucumber (Chinese Long) v3cmocucB0047
CmoCh10G002850Cla97C06G124770Watermelon (97103) v2cmowmbB067
CmoCh10G002850Bhi02G000027Wax gourdcmowgoB0071
CmoCh10G002850CsGy1G003070Cucumber (Gy14) v2cgybcmoB008
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G002850Cucurbita pepo (Zucchini)cmocpeB046
CmoCh10G002850Cucurbita pepo (Zucchini)cmocpeB059
CmoCh10G002850Cucurbita pepo (Zucchini)cmocpeB063
CmoCh10G002850Bottle gourd (USVL1VR-Ls)cmolsiB046
CmoCh10G002850Bottle gourd (USVL1VR-Ls)cmolsiB042
CmoCh10G002850Bottle gourd (USVL1VR-Ls)cmolsiB051
CmoCh10G002850Cucumber (Gy14) v2cgybcmoB024
CmoCh10G002850Cucumber (Gy14) v2cgybcmoB555
CmoCh10G002850Melon (DHL92) v3.6.1cmomedB041
CmoCh10G002850Melon (DHL92) v3.6.1cmomedB046
CmoCh10G002850Melon (DHL92) v3.6.1cmomedB054
CmoCh10G002850Silver-seed gourdcarcmoB0522
CmoCh10G002850Silver-seed gourdcarcmoB0622
CmoCh10G002850Silver-seed gourdcarcmoB0805
CmoCh10G002850Cucumber (Chinese Long) v3cmocucB0063
CmoCh10G002850Cucumber (Chinese Long) v3cmocucB0085
CmoCh10G002850Watermelon (97103) v2cmowmbB058
CmoCh10G002850Watermelon (97103) v2cmowmbB062
CmoCh10G002850Wax gourdcmowgoB0056
CmoCh10G002850Wax gourdcmowgoB0062
CmoCh10G002850Cucurbita moschata (Rifu)cmocmoB045
CmoCh10G002850Cucurbita moschata (Rifu)cmocmoB052
CmoCh10G002850Cucurbita moschata (Rifu)cmocmoB063
CmoCh10G002850Cucumber (Gy14) v1cgycmoB0257
CmoCh10G002850Cucumber (Gy14) v1cgycmoB0576
CmoCh10G002850Cucumber (Gy14) v1cgycmoB0577
CmoCh10G002850Cucurbita maxima (Rimu)cmacmoB106
CmoCh10G002850Cucurbita maxima (Rimu)cmacmoB209
CmoCh10G002850Cucurbita maxima (Rimu)cmacmoB386
CmoCh10G002850Wild cucumber (PI 183967)cmocpiB060
CmoCh10G002850Cucumber (Chinese Long) v2cmocuB059
CmoCh10G002850Melon (DHL92) v3.5.1cmomeB042
CmoCh10G002850Melon (DHL92) v3.5.1cmomeB051
CmoCh10G002850Watermelon (Charleston Gray)cmowcgB056
CmoCh10G002850Watermelon (97103) v1cmowmB055