Cla019018 (gene) Watermelon (97103) v1

Overview
NameCla019018
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 24359712 .. 24360167 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAAAACAAGAAACAAACACACAAAGGCGAAGAGGTACCGAGCTCGAATGATAGCAAAACGGTTTAAAGTCAAGAAGCTGTCAATAAGGCAAAAGCTTGGCTTCACAGAGAAGCTTGAAAAAGCCACAAAGCAAAGAATGAGGGTTTTTTGTATCAGAAGAACTCTGCCTCAGATCAAATTTGGGATATCATTCACAATTCCAGACAGAATGGCTACAGAGATTAATGACAAGAAGATGATAAGTGGATTACACCCACTGAGAATCACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGAAATTGTAAAAGAAGCTGAGAAAGGTTCAGCTCCATTGAAGAACACGCAGCATGGCAAGCCACCAAATCCTAAAGCATCATATCACAGGAGCTGCTTGAATGAGTGGTGTCCTCAAGTGTTTCATTTCATATCTAATCATTTATTTTGA

mRNA sequence

ATGACCAAAACAAGAAACAAACACACAAAGGCGAAGAGGTACCGAGCTCGAATGATAGCAAAACGGTTTAAAGTCAAGAAGCTGTCAATAAGGCAAAAGCTTGGCTTCACAGAGAAGCTTGAAAAAGCCACAAAGCAAAGAATGAGGGTTTTTTGTATCAGAAGAACTCTGCCTCAGATCAAATTTGGGATATCATTCACAATTCCAGACAGAATGGCTACAGAGATTAATGACAAGAAGATGATAAGTGGATTACACCCACTGAGAATCACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGAAATTGTAAAAGAAGCTGAGAAAGGTTCAGCTCCATTGAAGAACACGCAGCATGGCAAGCCACCAAATCCTAAAGCATCATATCACAGGAGCTGCTTGAATGAGTGGTGTCCTCAAGTGTTTCATTTCATATCTAATCATTTATTTTGA

Coding sequence (CDS)

ATGACCAAAACAAGAAACAAACACACAAAGGCGAAGAGGTACCGAGCTCGAATGATAGCAAAACGGTTTAAAGTCAAGAAGCTGTCAATAAGGCAAAAGCTTGGCTTCACAGAGAAGCTTGAAAAAGCCACAAAGCAAAGAATGAGGGTTTTTTGTATCAGAAGAACTCTGCCTCAGATCAAATTTGGGATATCATTCACAATTCCAGACAGAATGGCTACAGAGATTAATGACAAGAAGATGATAAGTGGATTACACCCACTGAGAATCACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGAAATTGTAAAAGAAGCTGAGAAAGGTTCAGCTCCATTGAAGAACACGCAGCATGGCAAGCCACCAAATCCTAAAGCATCATATCACAGGAGCTGCTTGAATGAGTGGTGTCCTCAAGTGTTTCATTTCATATCTAATCATTTATTTTGA

Protein sequence

MTKTRNKHTKAKRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNTQHGKPPNPKASYHRSCLNEWCPQVFHFISNHLF
Homology
[Close]
BLAST of Cla019018 vs. TrEMBL
Match: A0A0A0LRV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.4e-55
Identity = 116/149 (77.85%), Postives = 126/149 (84.56%), Query Frame = 1 

Query: 1   MTKTRNKHTKAK-RYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+ KAK R RAR IAKRF+V+  + RQKL  TEKLE+ +K+RM V    R L +
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERMEV----RALHE 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNTQ 120
           IKFGISFTIPDRMATEI+DKK ISGLHPLRITRVP GGPMEFHEIVKEAEKGSAPLKN Q
Sbjct: 61  IKFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQ 120

Query: 121 HGKPPNPKASYHRSCLNEWCPQVFHFISN 149
            GKPPNPKA+YHRSCLNEW PQVFHFISN
Sbjct: 121 KGKPPNPKAAYHRSCLNEWHPQVFHFISN 144

[Close]
BLAST of Cla019018 vs. TrEMBL
Match: G7KP67_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-21
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R+ P+ KFGI+FTIPDR+ +EINDKK I G +PLRITR+P GGP EFH +V+EAEK
Sbjct: 5   FCTIRSRPR-KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEK 64

Query: 111 GSAPL-----KNTQHGKPPNPKASYHRSCLNEWCPQVFHFIS 148
           GS+ +     KN    K  + K +YHR+  N+WC  VF+F S
Sbjct: 65  GSSTILTLKKKNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

[Close]
BLAST of Cla019018 vs. TrEMBL
Match: W9RJI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-21
Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R  P+ KFGISF +PDR+  EI DKK + G HP+RITRVP GGP  FH IV+EA K
Sbjct: 3   FCSVRAKPR-KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARK 62

Query: 111 GSAPLKNTQH--GKPPNPKASYHRSCLNEWCPQVFH 145
            S PLK         PNPK +YHRS +N+W PQVF+
Sbjct: 63  ESQPLKKHCDIVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]
BLAST of Cla019018 vs. TrEMBL
Match: K7MX31_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           +C  R+ P+ KFGISFT+PDR+  EINDKK + G HPLRITR+P GGP EFH I++E EK
Sbjct: 5   YCTIRSTPR-KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEK 64

Query: 111 GSAPL-----------KNTQHGKPPNPKASYHRSCLNEWCPQVFHF 146
           G +              +T+     + K +YHRS  N+W  QVF+F
Sbjct: 65  GPSSTLTLKKRKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]
BLAST of Cla019018 vs. TrEMBL
Match: A0A0B2Q3Z7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           +C  R+ P+ KFGISFT+PDR+  EINDKK + G HPLRITR+P GGP EFH I++E EK
Sbjct: 5   YCTIRSTPR-KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEK 64

Query: 111 GSAPL-----------KNTQHGKPPNPKASYHRSCLNEWCPQVFHF 146
           G +              +T+     + K +YHRS  N+W  QVF+F
Sbjct: 65  GPSSTLTLKKRKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]
BLAST of Cla019018 vs. NCBI nr
Match: gi|700208653|gb|KGN63749.1| (hypothetical protein Csa_1G014460 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 7.8e-55
Identity = 116/149 (77.85%), Postives = 126/149 (84.56%), Query Frame = 1 

Query: 1   MTKTRNKHTKAK-RYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+ KAK R RAR IAKRF+V+  + RQKL  TEKLE+ +K+RM V    R L +
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERMEV----RALHE 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNTQ 120
           IKFGISFTIPDRMATEI+DKK ISGLHPLRITRVP GGPMEFHEIVKEAEKGSAPLKN Q
Sbjct: 61  IKFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQ 120

Query: 121 HGKPPNPKASYHRSCLNEWCPQVFHFISN 149
            GKPPNPKA+YHRSCLNEW PQVFHFISN
Sbjct: 121 KGKPPNPKAAYHRSCLNEWHPQVFHFISN 144

[Close]
BLAST of Cla019018 vs. NCBI nr
Match: gi|357497249|ref|XP_003618913.1| (hypothetical protein MTR_6g026830 [Medicago truncatula])

HSP 1 Score: 109.8 bits (273), Expect = 4.3e-21
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R+ P+ KFGI+FTIPDR+ +EINDKK I G +PLRITR+P GGP EFH +V+EAEK
Sbjct: 5   FCTIRSRPR-KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEK 64

Query: 111 GSAPL-----KNTQHGKPPNPKASYHRSCLNEWCPQVFHFIS 148
           GS+ +     KN    K  + K +YHR+  N+WC  VF+F S
Sbjct: 65  GSSTILTLKKKNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

[Close]
BLAST of Cla019018 vs. NCBI nr
Match: gi|703108408|ref|XP_010099022.1| (hypothetical protein L484_005314 [Morus notabilis])

HSP 1 Score: 109.4 bits (272), Expect = 5.6e-21
Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R  P+ KFGISF +PDR+  EI DKK + G HP+RITRVP GGP  FH IV+EA K
Sbjct: 3   FCSVRAKPR-KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARK 62

Query: 111 GSAPLKNTQH--GKPPNPKASYHRSCLNEWCPQVFH 145
            S PLK         PNPK +YHRS +N+W PQVF+
Sbjct: 63  ESQPLKKHCDIVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]
BLAST of Cla019018 vs. NCBI nr
Match: gi|734362704|gb|KHN16266.1| (hypothetical protein glysoja_048928 [Glycine soja])

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           +C  R+ P+ KFGISFT+PDR+  EINDKK + G HPLRITR+P GGP EFH I++E EK
Sbjct: 5   YCTIRSTPR-KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEK 64

Query: 111 GSAPL-----------KNTQHGKPPNPKASYHRSCLNEWCPQVFHF 146
           G +              +T+     + K +YHRS  N+W  QVF+F
Sbjct: 65  GPSSTLTLKKRKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

The following BLAST results are available for this feature:
BLAST of Cla019018 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRV9_CUCSA5.4e-5577.85Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1[more]
G7KP67_MEDTR3.0e-2154.90Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1[more]
W9RJI5_9ROSA3.9e-2157.29Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1[more]
K7MX31_SOYBN1.8e-1848.11Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1[more]
A0A0B2Q3Z7_GLYSO1.8e-1848.11Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1[more]
BLAST of Cla019018 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208653|gb|KGN63749.1|7.8e-5577.85hypothetical protein Csa_1G014460 [Cucumis sativus][more]
gi|357497249|ref|XP_003618913.1|4.3e-2154.90hypothetical protein MTR_6g026830 [Medicago truncatula][more]
gi|703108408|ref|XP_010099022.1|5.6e-2157.29hypothetical protein L484_005314 [Morus notabilis][more]
gi|734362704|gb|KHN16266.1|2.6e-1848.11hypothetical protein glysoja_048928 [Glycine soja][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019018Cla019018.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla019018Cla97C06G124770Watermelon (97103) v2wmwmbB406
Cla019018Csa1G014460Cucumber (Chinese Long) v2cuwmB082
Cla019018ClCG06G015250Watermelon (Charleston Gray)wcgwmB344
Cla019018CSPI01G03080Wild cucumber (PI 183967)cpiwmB089
Cla019018CmaCh10G002680Cucurbita maxima (Rimu)cmawmB069
Cla019018CmoCh10G002850Cucurbita moschata (Rifu)cmowmB061
Cla019018Cp4.1LG18g07320Cucurbita pepo (Zucchini)cpewmB374
Cla019018CsGy1G003070Cucumber (Gy14) v2cgybwmB082
Cla019018CsaV3_1G003140Cucumber (Chinese Long) v3cucwmB094
Cla019018Bhi02G000027Wax gourdwgowmB679
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla019018Watermelon (97103) v1wmwmB136
Cla019018Watermelon (97103) v1wmwmB156
Cla019018Cucumber (Gy14) v1cgywmB168
Cla019018Cucumber (Gy14) v1cgywmB389
Cla019018Cucumber (Gy14) v1cgywmB390
Cla019018Cucumber (Gy14) v1cgywmB530
Cla019018Cucurbita maxima (Rimu)cmawmB143
Cla019018Cucurbita maxima (Rimu)cmawmB214
Cla019018Cucurbita maxima (Rimu)cmawmB402
Cla019018Cucurbita maxima (Rimu)cmawmB404
Cla019018Cucurbita maxima (Rimu)cmawmB746
Cla019018Cucurbita moschata (Rifu)cmowmB128
Cla019018Cucurbita moschata (Rifu)cmowmB202
Cla019018Cucurbita moschata (Rifu)cmowmB396
Cla019018Melon (DHL92) v3.5.1mewmB081
Cla019018Melon (DHL92) v3.5.1mewmB180
Cla019018Melon (DHL92) v3.5.1mewmB289
Cla019018Watermelon (Charleston Gray)wcgwmB267
Cla019018Watermelon (Charleston Gray)wcgwmB308
Cla019018Cucumber (Chinese Long) v2cuwmB096
Cla019018Cucumber (Chinese Long) v2cuwmB441
Cla019018Cucurbita pepo (Zucchini)cpewmB058
Cla019018Cucurbita pepo (Zucchini)cpewmB059
Cla019018Cucurbita pepo (Zucchini)cpewmB470
Cla019018Cucurbita pepo (Zucchini)cpewmB529
Cla019018Cucurbita pepo (Zucchini)cpewmB679
Cla019018Bottle gourd (USVL1VR-Ls)lsiwmB223
Cla019018Bottle gourd (USVL1VR-Ls)lsiwmB341
Cla019018Bottle gourd (USVL1VR-Ls)lsiwmB414
Cla019018Cucumber (Gy14) v2cgybwmB096
Cla019018Cucumber (Gy14) v2cgybwmB412
Cla019018Melon (DHL92) v3.6.1medwmB079
Cla019018Melon (DHL92) v3.6.1medwmB177
Cla019018Melon (DHL92) v3.6.1medwmB283
Cla019018Silver-seed gourdcarwmB0391
Cla019018Silver-seed gourdcarwmB0461
Cla019018Silver-seed gourdcarwmB0511
Cla019018Silver-seed gourdcarwmB0594
Cla019018Silver-seed gourdcarwmB0846
Cla019018Cucumber (Chinese Long) v3cucwmB107
Cla019018Cucumber (Chinese Long) v3cucwmB466
Cla019018Watermelon (97103) v2wmwmbB397
Cla019018Watermelon (97103) v2wmwmbB400
Cla019018Wax gourdwgowmB523
Cla019018Wax gourdwgowmB574