Csa1G014460 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G014460
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 1923585 .. 1924065 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCGTTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGACAAGTTTGGGGGATTTATAGATTGAAAGGGAATTA

mRNA sequence

ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCGTTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGACAAGTTTGGGGGATTTATAGATTGA

Coding sequence (CDS)

ATGGCCAAAACAAGAAACAAAAACATAAAGGCGAAGAAGAGGGACCGAGCTCGAACGATAGCAAAACGATTTAGAGTCGAGAACTTTACAAGGCAAAAACTTGTTCTGACAGAGAAGCTTGAAGAGACCTCAAAGGAAAGAATGGAGGTAAGAGCTTTGCATGAAATCAAGTTTGGGATATCATTCACAATTCCTGATAGAATGGCTACAGAAATTAGTGATAAGAAAAGGATAAGTGGATTACACCCGTTGAGGATCACAAGAGTTCCATATGGAGGGCCAATGGAGTTTCATGAGATTGTAAAAGAGGCTGAGAAAGGTTCAGCTCCATTGAAGAATCAGCAAAAAGGGAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTGAATGAATGGCATCCTCAAGTGTTTCATTTCATCTCTAATTCTTATTGTCCTGACAAGTTTGGGGGATTTATAGATTGA

Protein sequence

MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPPNPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID*
Homology
[Close]
BLAST of Csa1G014460 vs. TrEMBL
Match: A0A0A0LRV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.0e-85
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP
Sbjct: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 157
           NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID
Sbjct: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 156

[Close]
BLAST of Csa1G014460 vs. TrEMBL
Match: W9RJI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-22
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISF +PDR+  EI+DKK++ G HP+RITRVP GGP  FH IV+EA K S PLK    
Sbjct: 12  KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARKESQPLKKHCD 71

Query: 117 --GKPPNPKAAYHRSCLNEWHPQVFH 141
                PNPK AYHRS +N+WHPQVF+
Sbjct: 72  IVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]
BLAST of Csa1G014460 vs. TrEMBL
Match: G7KP67_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.5e-19
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPL----- 116
           KFGI+FTIPDR+ +EI+DKKRI G +PLRITR+P GGP EFH +V+EAEKGS+ +     
Sbjct: 14  KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEKGSSTILTLKK 73

Query: 117 KNQQKGKPPNPKAAYHRSCLNEWHPQVFHFIS 144
           KN    K  + K AYHR+  N+W   VF+F S
Sbjct: 74  KNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

[Close]
BLAST of Csa1G014460 vs. TrEMBL
Match: A0A0B2Q3Z7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISFT+PDR+  EI+DKKR+ G HPLRITR+P GGP EFH I++E EKG +     +K
Sbjct: 14  KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEKGPSSTLTLKK 73

Query: 117 GKP-----------PNPKAAYHRSCLNEWHPQVFHF 142
            K             + K AYHRS  N+W+ QVF+F
Sbjct: 74  RKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]
BLAST of Csa1G014460 vs. TrEMBL
Match: K7MX31_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISFT+PDR+  EI+DKKR+ G HPLRITR+P GGP EFH I++E EKG +     +K
Sbjct: 14  KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEKGPSSTLTLKK 73

Query: 117 GKP-----------PNPKAAYHRSCLNEWHPQVFHF 142
            K             + K AYHRS  N+W+ QVF+F
Sbjct: 74  RKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

[Close]
BLAST of Csa1G014460 vs. NCBI nr
Match: gi|700208653|gb|KGN63749.1| (hypothetical protein Csa_1G014460 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 5.7e-85
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60
           MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFTRQKLVLTEKLEETSKERMEVRALHEIKFGI 60

Query: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120
           SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP
Sbjct: 61  SFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQKGKPP 120

Query: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 157
           NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID
Sbjct: 121 NPKAAYHRSCLNEWHPQVFHFISNSYCPDKFGGFID 156

[Close]
BLAST of Csa1G014460 vs. NCBI nr
Match: gi|703108408|ref|XP_010099022.1| (hypothetical protein L484_005314 [Morus notabilis])

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISF +PDR+  EI+DKK++ G HP+RITRVP GGP  FH IV+EA K S PLK    
Sbjct: 12  KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARKESQPLKKHCD 71

Query: 117 --GKPPNPKAAYHRSCLNEWHPQVFH 141
                PNPK AYHRS +N+WHPQVF+
Sbjct: 72  IVATRPNPKKAYHRSHMNDWHPQVFY 97

[Close]
BLAST of Csa1G014460 vs. NCBI nr
Match: gi|357497249|ref|XP_003618913.1| (hypothetical protein MTR_6g026830 [Medicago truncatula])

HSP 1 Score: 102.1 bits (253), Expect = 9.3e-19
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPL----- 116
           KFGI+FTIPDR+ +EI+DKKRI G +PLRITR+P GGP EFH +V+EAEKGS+ +     
Sbjct: 14  KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEKGSSTILTLKK 73

Query: 117 KNQQKGKPPNPKAAYHRSCLNEWHPQVFHFIS 144
           KN    K  + K AYHR+  N+W   VF+F S
Sbjct: 74  KNGVGNKLFSHKRAYHRNRFNDWCVDVFYFES 105

[Close]
BLAST of Csa1G014460 vs. NCBI nr
Match: gi|734362704|gb|KHN16266.1| (hypothetical protein glysoja_048928 [Glycine soja])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 57  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQK 116
           KFGISFT+PDR+  EI+DKKR+ G HPLRITR+P GGP EFH I++E EKG +     +K
Sbjct: 14  KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEKGPSSTLTLKK 73

Query: 117 GKP-----------PNPKAAYHRSCLNEWHPQVFHF 142
            K             + K AYHRS  N+W+ QVF+F
Sbjct: 74  RKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYF 109

The following BLAST results are available for this feature:
BLAST of Csa1G014460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRV9_CUCSA4.0e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1[more]
W9RJI5_9ROSA2.8e-2261.63Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1[more]
G7KP67_MEDTR6.5e-1956.52Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1[more]
A0A0B2Q3Z7_GLYSO1.1e-1852.08Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1[more]
K7MX31_SOYBN1.1e-1852.08Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1[more]
BLAST of Csa1G014460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208653|gb|KGN63749.1|5.7e-85100.00hypothetical protein Csa_1G014460 [Cucumis sativus][more]
gi|703108408|ref|XP_010099022.1|4.0e-2261.63hypothetical protein L484_005314 [Morus notabilis][more]
gi|357497249|ref|XP_003618913.1|9.3e-1956.52hypothetical protein MTR_6g026830 [Medicago truncatula][more]
gi|734362704|gb|KHN16266.1|1.6e-1852.08hypothetical protein glysoja_048928 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G014460.1Csa1G014460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 26..46
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G014460Cla019018Watermelon (97103) v1cuwmB082
Csa1G014460ClCG06G015250Watermelon (Charleston Gray)cuwcgB068
Csa1G014460Cla97C06G124770Watermelon (97103) v2cuwmbB068
Csa1G014460Bhi02G000027Wax gourdcuwgoB080
Csa1G014460CSPI01G03080Wild cucumber (PI 183967)cpicuB000
Csa1G014460CmaCh10G002680Cucurbita maxima (Rimu)cmacuB051
Csa1G014460CmoCh10G002850Cucurbita moschata (Rifu)cmocuB040
Csa1G014460Cp4.1LG18g07320Cucurbita pepo (Zucchini)cpecuB364
Csa1G014460CsGy1G003070Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G014460Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G014460Bottle gourd (USVL1VR-Ls)culsiB042
Csa1G014460Bottle gourd (USVL1VR-Ls)culsiB061
Csa1G014460Cucumber (Gy14) v2cgybcuB005
Csa1G014460Cucumber (Gy14) v2cgybcuB015
Csa1G014460Melon (DHL92) v3.6.1cumedB019
Csa1G014460Melon (DHL92) v3.6.1cumedB036
Csa1G014460Melon (DHL92) v3.6.1cumedB046
Csa1G014460Silver-seed gourdcarcuB0416
Csa1G014460Silver-seed gourdcarcuB0491
Csa1G014460Silver-seed gourdcarcuB0494
Csa1G014460Silver-seed gourdcarcuB0543
Csa1G014460Silver-seed gourdcarcuB0620
Csa1G014460Silver-seed gourdcarcuB0622
Csa1G014460Watermelon (97103) v2cuwmbB053
Csa1G014460Watermelon (97103) v2cuwmbB055
Csa1G014460Wax gourdcuwgoB043
Csa1G014460Cucumber (Chinese Long) v2cucuB000
Csa1G014460Cucumber (Chinese Long) v2cucuB003
Csa1G014460Cucumber (Gy14) v1cgycuB138
Csa1G014460Cucumber (Gy14) v1cgycuB140
Csa1G014460Cucumber (Gy14) v1cgycuB299
Csa1G014460Cucurbita maxima (Rimu)cmacuB070
Csa1G014460Cucurbita maxima (Rimu)cmacuB087
Csa1G014460Cucurbita maxima (Rimu)cmacuB101
Csa1G014460Cucurbita maxima (Rimu)cmacuB221
Csa1G014460Cucurbita maxima (Rimu)cmacuB393
Csa1G014460Cucurbita moschata (Rifu)cmocuB076
Csa1G014460Cucurbita moschata (Rifu)cmocuB089
Csa1G014460Cucurbita moschata (Rifu)cmocuB201
Csa1G014460Cucurbita moschata (Rifu)cmocuB210
Csa1G014460Cucurbita moschata (Rifu)cmocuB385
Csa1G014460Melon (DHL92) v3.5.1cumeB023
Csa1G014460Melon (DHL92) v3.5.1cumeB044
Csa1G014460Watermelon (Charleston Gray)cuwcgB058
Csa1G014460Watermelon (97103) v1cuwmB061
Csa1G014460Watermelon (97103) v1cuwmB063
Csa1G014460Cucurbita pepo (Zucchini)cpecuB033
Csa1G014460Cucurbita pepo (Zucchini)cpecuB352
Csa1G014460Cucurbita pepo (Zucchini)cpecuB509
Csa1G014460Cucurbita pepo (Zucchini)cpecuB638