ClCG06G015250 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G015250
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr06 : 28612708 .. 28613237 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAAAACAAGAAACAAACACACAAAGGCGAAGAGGTACCGAGCTCGAATGATAGCAAAACGGTTTAAAGTCAAGAAGCTGTCAATAAGGCAAAAGCTTGGCTTCACAGAGAAGCTTGAAAAAGCCACAAAGCAAAGAATGAGAGTTTTTTGTATCAGAAGAACTCTGCCTCAGATCAAATTTGGGATATCATTCACAATTCCAGACAGAATGGCTACAGAGATTAATGACAAGAAGATGATAAGTGGATTACACCCACTGAGAATCACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGAAATTGTAAAAGAAGCTGAGAAAGGTTCAGCTCCATTGAAGAACACGCAGCATGGCAAGCCACCAAATCCTAAAGCATCATATCACAGGAGCTGCTTGAATGAGTGGTGTCCTCAAGTGTTTCATTTCATATCTAATCATTTATTTTGAAATATGGGGTAGGGATATAGACCTCTAACCTCGAGGTCAATAACACAAGTCTTGTGCTAATTGAGCTATGTTGA

mRNA sequence

ATGACCAAAACAAGAAACAAACACACAAAGGCGAAGAGGTACCGAGCTCGAATGATAGCAAAACGGTTTAAAGTCAAGAAGCTGTCAATAAGGCAAAAGCTTGGCTTCACAGAGAAGCTTGAAAAAGCCACAAAGCAAAGAATGAGAGTTTTTTGTATCAGAAGAACTCTGCCTCAGATCAAATTTGGGATATCATTCACAATTCCAGACAGAATGGCTACAGAGATTAATGACAAGAAGATGATAAGTGGATTACACCCACTGAGAATCACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGAAATTGTAAAAGAAGCTGAGAAAGGTTCAGCTCCATTGAAGAACACGCAGCATGGCAAGCCACCAAATCCTAAAGCATCATATCACAGGAGCTGCTTGAATGAGTGGTGTCCTCAAACCTCTAACCTCGAGGTCAATAACACAAGTCTTGTGCTAATTGAGCTATGTTGA

Coding sequence (CDS)

ATGACCAAAACAAGAAACAAACACACAAAGGCGAAGAGGTACCGAGCTCGAATGATAGCAAAACGGTTTAAAGTCAAGAAGCTGTCAATAAGGCAAAAGCTTGGCTTCACAGAGAAGCTTGAAAAAGCCACAAAGCAAAGAATGAGAGTTTTTTGTATCAGAAGAACTCTGCCTCAGATCAAATTTGGGATATCATTCACAATTCCAGACAGAATGGCTACAGAGATTAATGACAAGAAGATGATAAGTGGATTACACCCACTGAGAATCACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGAAATTGTAAAAGAAGCTGAGAAAGGTTCAGCTCCATTGAAGAACACGCAGCATGGCAAGCCACCAAATCCTAAAGCATCATATCACAGGAGCTGCTTGAATGAGTGGTGTCCTCAAACCTCTAACCTCGAGGTCAATAACACAAGTCTTGTGCTAATTGAGCTATGTTGA

Protein sequence

MTKTRNKHTKAKRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNTQHGKPPNPKASYHRSCLNEWCPQTSNLEVNNTSLVLIELC
Homology
[Close]
BLAST of ClCG06G015250 vs. TrEMBL
Match: A0A0A0LRV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 110/150 (73.33%), Postives = 122/150 (81.33%), Query Frame = 1 

Query: 1   MTKTRNKHTKAK-RYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+ KAK R RAR IAKRF+V+  + RQKL  TEKLE+ +K+RM V    R L +
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERMEV----RALHE 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNTQ 120
           IKFGISFTIPDRMATEI+DKK ISGLHPLRITRVP GGPMEFHEIVKEAEKGSAPLKN Q
Sbjct: 61  IKFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQ 120

Query: 121 HGKPPNPKASYHRSCLNEWCPQTSNLEVNN 150
            GKPPNPKA+YHRSCLNEW PQ  +   N+
Sbjct: 121 KGKPPNPKAAYHRSCLNEWHPQVFHFISNS 145

[Close]
BLAST of ClCG06G015250 vs. TrEMBL
Match: W9RJI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R  P+ KFGISF +PDR+  EI DKK + G HP+RITRVP GGP  FH IV+EA K
Sbjct: 3   FCSVRAKPR-KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARK 62

Query: 111 GSAPLKNTQH--GKPPNPKASYHRSCLNEWCPQ 142
            S PLK         PNPK +YHRS +N+W PQ
Sbjct: 63  ESQPLKKHCDIVATRPNPKKAYHRSHMNDWHPQ 94

[Close]
BLAST of ClCG06G015250 vs. TrEMBL
Match: G7KP67_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-19
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R+ P+ KFGI+FTIPDR+ +EINDKK I G +PLRITR+P GGP EFH +V+EAEK
Sbjct: 5   FCTIRSRPR-KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEK 64

Query: 111 GSAPL-----KNTQHGKPPNPKASYHRSCLNEWC 140
           GS+ +     KN    K  + K +YHR+  N+WC
Sbjct: 65  GSSTILTLKKKNGVGNKLFSHKRAYHRNRFNDWC 97

[Close]
BLAST of ClCG06G015250 vs. TrEMBL
Match: K7MX31_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           +C  R+ P+ KFGISFT+PDR+  EINDKK + G HPLRITR+P GGP EFH I++E EK
Sbjct: 5   YCTIRSTPR-KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEK 64

Query: 111 GSAPL-----------KNTQHGKPPNPKASYHRSCLNEWCPQTSNLE 147
           G +              +T+     + K +YHRS  N+W  Q    E
Sbjct: 65  GPSSTLTLKKRKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYFE 110

[Close]
BLAST of ClCG06G015250 vs. TrEMBL
Match: A0A0B2Q3Z7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           +C  R+ P+ KFGISFT+PDR+  EINDKK + G HPLRITR+P GGP EFH I++E EK
Sbjct: 5   YCTIRSTPR-KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEK 64

Query: 111 GSAPL-----------KNTQHGKPPNPKASYHRSCLNEWCPQTSNLE 147
           G +              +T+     + K +YHRS  N+W  Q    E
Sbjct: 65  GPSSTLTLKKRKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYFE 110

[Close]
BLAST of ClCG06G015250 vs. NCBI nr
Match: gi|700208653|gb|KGN63749.1| (hypothetical protein Csa_1G014460 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.6e-50
Identity = 110/150 (73.33%), Postives = 122/150 (81.33%), Query Frame = 1 

Query: 1   MTKTRNKHTKAK-RYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+ KAK R RAR IAKRF+V+  + RQKL  TEKLE+ +K+RM V    R L +
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERMEV----RALHE 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKGSAPLKNTQ 120
           IKFGISFTIPDRMATEI+DKK ISGLHPLRITRVP GGPMEFHEIVKEAEKGSAPLKN Q
Sbjct: 61  IKFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKNQQ 120

Query: 121 HGKPPNPKASYHRSCLNEWCPQTSNLEVNN 150
            GKPPNPKA+YHRSCLNEW PQ  +   N+
Sbjct: 121 KGKPPNPKAAYHRSCLNEWHPQVFHFISNS 145

[Close]
BLAST of ClCG06G015250 vs. NCBI nr
Match: gi|703108408|ref|XP_010099022.1| (hypothetical protein L484_005314 [Morus notabilis])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R  P+ KFGISF +PDR+  EI DKK + G HP+RITRVP GGP  FH IV+EA K
Sbjct: 3   FCSVRAKPR-KFGISFIVPDRLVVEITDKKKVWGKHPMRITRVPSGGPAGFHNIVEEARK 62

Query: 111 GSAPLKNTQH--GKPPNPKASYHRSCLNEWCPQ 142
            S PLK         PNPK +YHRS +N+W PQ
Sbjct: 63  ESQPLKKHCDIVATRPNPKKAYHRSHMNDWHPQ 94

[Close]
BLAST of ClCG06G015250 vs. NCBI nr
Match: gi|357497249|ref|XP_003618913.1| (hypothetical protein MTR_6g026830 [Medicago truncatula])

HSP 1 Score: 103.2 bits (256), Expect = 4.2e-19
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R+ P+ KFGI+FTIPDR+ +EINDKK I G +PLRITR+P GGP EFH +V+EAEK
Sbjct: 5   FCTIRSRPR-KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEK 64

Query: 111 GSAPL-----KNTQHGKPPNPKASYHRSCLNEWC 140
           GS+ +     KN    K  + K +YHR+  N+WC
Sbjct: 65  GSSTILTLKKKNGVGNKLFSHKRAYHRNRFNDWC 97

[Close]
BLAST of ClCG06G015250 vs. NCBI nr
Match: gi|734362704|gb|KHN16266.1| (hypothetical protein glysoja_048928 [Glycine soja])

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           +C  R+ P+ KFGISFT+PDR+  EINDKK + G HPLRITR+P GGP EFH I++E EK
Sbjct: 5   YCTIRSTPR-KFGISFTVPDRVTAEINDKKRVIGKHPLRITRIPSGGPSEFHRIMQEVEK 64

Query: 111 GSAPL-----------KNTQHGKPPNPKASYHRSCLNEWCPQTSNLE 147
           G +              +T+     + K +YHRS  N+W  Q    E
Sbjct: 65  GPSSTLTLKKRKNYDDDDTKEEYLVSHKRAYHRSRFNDWYVQVFYFE 110

The following BLAST results are available for this feature:
BLAST of ClCG06G015250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRV9_CUCSA1.1e-5073.33Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014460 PE=4 SV=1[more]
W9RJI5_9ROSA1.0e-1956.99Uncharacterized protein OS=Morus notabilis GN=L484_005314 PE=4 SV=1[more]
G7KP67_MEDTR2.9e-1955.32Uncharacterized protein OS=Medicago truncatula GN=MTR_6g026830 PE=4 SV=1[more]
K7MX31_SOYBN1.8e-1645.79Uncharacterized protein OS=Glycine max GN=GLYMA_19G067600 PE=4 SV=1[more]
A0A0B2Q3Z7_GLYSO1.8e-1645.79Uncharacterized protein OS=Glycine soja GN=glysoja_048928 PE=4 SV=1[more]
BLAST of ClCG06G015250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208653|gb|KGN63749.1|1.6e-5073.33hypothetical protein Csa_1G014460 [Cucumis sativus][more]
gi|703108408|ref|XP_010099022.1|1.4e-1956.99hypothetical protein L484_005314 [Morus notabilis][more]
gi|357497249|ref|XP_003618913.1|4.2e-1955.32hypothetical protein MTR_6g026830 [Medicago truncatula][more]
gi|734362704|gb|KHN16266.1|2.6e-1645.79hypothetical protein glysoja_048928 [Glycine soja][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G015250.1ClCG06G015250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G015250Csa1G014460Cucumber (Chinese Long) v2cuwcgB068
ClCG06G015250Cla019018Watermelon (97103) v1wcgwmB344
ClCG06G015250Cla97C06G124770Watermelon (97103) v2wcgwmbB273
ClCG06G015250Bhi02G000027Wax gourdwcgwgoB542
ClCG06G015250CSPI01G03080Wild cucumber (PI 183967)cpiwcgB074
ClCG06G015250CmaCh10G002680Cucurbita maxima (Rimu)cmawcgB069
ClCG06G015250CmoCh10G002850Cucurbita moschata (Rifu)cmowcgB062
ClCG06G015250Cp4.1LG18g07320Cucurbita pepo (Zucchini)cpewcgB337
ClCG06G015250CsGy1G003070Cucumber (Gy14) v2cgybwcgB066
ClCG06G015250CsaV3_1G003140Cucumber (Chinese Long) v3cucwcgB077
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G015250Cucumber (Gy14) v2cgybwcgB080
ClCG06G015250Cucumber (Gy14) v2cgybwcgB365
ClCG06G015250Melon (DHL92) v3.6.1medwcgB063
ClCG06G015250Melon (DHL92) v3.6.1medwcgB150
ClCG06G015250Melon (DHL92) v3.6.1medwcgB246
ClCG06G015250Silver-seed gourdcarwcgB0388
ClCG06G015250Silver-seed gourdcarwcgB0451
ClCG06G015250Silver-seed gourdcarwcgB0500
ClCG06G015250Silver-seed gourdcarwcgB0581
ClCG06G015250Silver-seed gourdcarwcgB0817
ClCG06G015250Silver-seed gourdcarwcgB1017
ClCG06G015250Cucumber (Chinese Long) v3cucwcgB090
ClCG06G015250Cucumber (Chinese Long) v3cucwcgB420
ClCG06G015250Watermelon (97103) v2wcgwmbB263
ClCG06G015250Watermelon (97103) v2wcgwmbB266
ClCG06G015250Wax gourdwcgwgoB527
ClCG06G015250Wax gourdwcgwgoB534
ClCG06G015250Watermelon (Charleston Gray)wcgwcgB149
ClCG06G015250Watermelon (Charleston Gray)wcgwcgB155
ClCG06G015250Cucumber (Gy14) v1cgywcgB166
ClCG06G015250Cucumber (Gy14) v1cgywcgB366
ClCG06G015250Cucumber (Gy14) v1cgywcgB368
ClCG06G015250Cucumber (Gy14) v1cgywcgB499
ClCG06G015250Cucurbita maxima (Rimu)cmawcgB135
ClCG06G015250Cucurbita maxima (Rimu)cmawcgB208
ClCG06G015250Cucurbita maxima (Rimu)cmawcgB370
ClCG06G015250Cucurbita maxima (Rimu)cmawcgB371
ClCG06G015250Cucurbita maxima (Rimu)cmawcgB666
ClCG06G015250Cucurbita moschata (Rifu)cmowcgB119
ClCG06G015250Cucurbita moschata (Rifu)cmowcgB195
ClCG06G015250Cucurbita moschata (Rifu)cmowcgB364
ClCG06G015250Wild cucumber (PI 183967)cpiwcgB085
ClCG06G015250Wild cucumber (PI 183967)cpiwcgB417
ClCG06G015250Cucumber (Chinese Long) v2cuwcgB083
ClCG06G015250Cucumber (Chinese Long) v2cuwcgB400
ClCG06G015250Melon (DHL92) v3.5.1mewcgB064
ClCG06G015250Melon (DHL92) v3.5.1mewcgB159
ClCG06G015250Melon (DHL92) v3.5.1mewcgB254
ClCG06G015250Watermelon (97103) v1wcgwmB326
ClCG06G015250Watermelon (97103) v1wcgwmB339
ClCG06G015250Cucurbita pepo (Zucchini)cpewcgB048
ClCG06G015250Cucurbita pepo (Zucchini)cpewcgB049
ClCG06G015250Cucurbita pepo (Zucchini)cpewcgB401
ClCG06G015250Cucurbita pepo (Zucchini)cpewcgB475
ClCG06G015250Cucurbita pepo (Zucchini)cpewcgB616
ClCG06G015250Bottle gourd (USVL1VR-Ls)lsiwcgB201
ClCG06G015250Bottle gourd (USVL1VR-Ls)lsiwcgB293
ClCG06G015250Bottle gourd (USVL1VR-Ls)lsiwcgB372