CsaV3_6G051600 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AGAAACTCTTCCAAATCCCCCCCGCGCACCCAATTCATTATTTAGGCATTTTCCTCACCATTTTCCTTTTTCTTTAGTATTGAACAGTGTTTAAAATATTGATATTGACTCGTAAGCCTCAAGCAAATGCCTCAACCTCCCACTTCCTCCTCTGTATAAATAAACAACCGTATTCAAACCGAGTTGATACCGAGTTCAAGAGAGAGAGAATCAGAAAGAGAGATTTTAGAGAGAGAACGGATGGATGATGCAATTGATAGGAAGAAAACAAAGACGATGAAGAAGAGAGTGTTCAGCTTCCAGAGGCTCAGAGATTCCTGGAAGTGGAAATTTCTTAAGAATTTCAAGTGGAAGCGATTGAATCTCCAGATGGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTTTGTTTGAGACTGTTGCGTTGGTAGGCATCGCCAGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGATTATTCGATATGAAACTAACCGAATTCTGTATGTATTTGTTAATTTGTTATAAAAATTTCCTTCCTCTTCAGTTTTTTTTTTCTCTTCGAGTCGTTATCAATTAATTCTCCTTTTGAATTGTGTTGATCTCTGTGGCTTTGAATATCTGTGACGACTGACGAAGTACCCATTAATCAATCAAGCAAAACTCTTGAGTGTTTTCGAATAGAATTCATTGGTTATAACATTGCGTTGAATATAATTTGGAAAGGGTTTAGAAGATTTTGAGTATAATTTTTCATGAGATGATCAGCGTGAGAGATAATGAATAAATTAGGTTAGAATAATTTTGATAAGTGAGAAGGCGGAGTTGGTCATCGACGGCGAAGAAGGAAGGGAAGAGTGATTGTGATGGAAGGATTGAATAATCTTTTTTCCAACTGTCTCGAACTATTATTCGAATATTAGAGCCTTTCACGTTTGTGTTTCTCTGGCAATATTCA ATGGATGATGCAATTGATAGGAAGAAAACAAAGACGATGAAGAAGAGAGTGTTCAGCTTCCAGAGGCTCAGAGATTCCTGGAAGTGGAAATTTCTTAAGAATTTCAAGTGGAAGCGATTGAATCTCCAGATGGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTTTGTTTGAGACTGTTGCGTTGGTAGGCATCGCCAGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGA ATGGATGATGCAATTGATAGGAAGAAAACAAAGACGATGAAGAAGAGAGTGTTCAGCTTCCAGAGGCTCAGAGATTCCTGGAAGTGGAAATTTCTTAAGAATTTCAAGTGGAAGCGATTGAATCTCCAGATGGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTTTGTTTGAGACTGTTGCGTTGGTAGGCATCGCCAGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGA MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIASFFFLCCGGCRF* Homology
BLAST of CsaV3_6G051600 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus]) HSP 1 Score: 160.6 bits (405), Expect = 5.6e-36 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 133.3 bits (334), Expect = 9.5e-28 Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21 Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. NCBI nr
Match: ESR62900.1 (hypothetical protein CICLE_v10017350mg [Citrus clementina]) HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09 Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. NCBI nr
Match: KDO78130.1 (hypothetical protein CISIN_1g036027mg [Citrus sinensis]) HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09 Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: A0A067GHI9 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 7.4e-10 Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: V4UFE9 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 7.4e-10 Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: A0A1R3FVP9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09 Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09 Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 0
BLAST of CsaV3_6G051600 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06 Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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