CsaV3_3G036860 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G036860
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Phytosulfokine-beta
Location	chr3: 30509507 .. 30510572 (-)
RNA-Seq Expression	CsaV3_3G036860
Synteny	CsaV3_3G036860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAGATTGTTGGCATTTTTTAAGCCCATAACTGCCTTTGTTTTGGTGTCTCCATGTGACTTGAAAAAGGCAACAAACACACAATCTCTCTATTTTATTCTCCTCTCTATTTAATTTTCCTTTTTCCTTTTTTCTTTTCATTTTCTCCATTCCCATTAGACCTATTCCCCTCTTCTTCTTCTTCTTCTTCTAATAATAATAATCATTTCTCTCATTTTTCACCTCCAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAGAGAAAAAGAAACAGCATTAAGAAAAATGAACCACAATTCCCATGGCTTCTTCTTCTTCTTCTTCATCTCTTTTCTCTTCATTTTTCTTCTCTTTTCTTCACATTCTGCCTCTGCTAGTTTCCCTCCATCCAAACATGGTAAAACCCATTTCTAGAAACCCTTCCTTTTTTAATTTTTCTTCCCTCTTTTTCTTGTAAAAAAAAAAACTTCCATTATTTTCTCACTATTTCTTTCTGTTTCCCTTTCGATTTTCCTCGAAAATTTGCAGGTATAGAAGAAACCCACAGGAAGATCAGCTATGGATCAATGGTTCAATTAGGAGATTCATTGCCAGATTTCCCTCATGTAAATTAAATACCCTTTACTTTTTCATTTATTTATTTTTATTTTCTAATTTCCTTCTTTGGATTTTAATTTTAATTCTTTTTTTTTTTTTCTGGTAGATAAAGGGAGAGAAAGAAGTAGGAGAAGAAGAAGAAGGAGAGAAGAGGAAGATGATGTTAGAAGCTCACTTGGATTATGTTTACACACAAAATGAGAATCCTTGAATCAATATATGTTTTTATGTATATATCCAAATACTTAAACTAGAAGAAATTGTTGCTGTTTTCTTCGTATATTTATATATACAGTTTTATATTGTTTACATTTATTATCATTACTACACACTATTACTATTACTATTATTATATTCATTTCTTCTTCCCTTTTCTGGTCTCTTCTCAAGTCTATGATCTTATATTTAAGTTTTTATTATTATTACAAGGAAAATAAAGGCTTTAAGTAGATGTTAGGACCCCCTTTTCAT

mRNA sequence

ATGAACCACAATTCCCATGGCTTCTTCTTCTTCTTCTTCATCTCTTTTCTCTTCATTTTTCTTCTCTTTTCTTCACATTCTGCCTCTGCTAGTTTCCCTCCATCCAAACATGGTATAGAAGAAACCCACAGGAAGATCAGCTATGGATCAATGGTTCAATTAGGAGATTCATTGCCAGATTTCCCTCATATAAAGGGAGAGAAAGAAGTAGGAGAAGAAGAAGAAGGAGAGAAGAGGAAGATGATGTTAGAAGCTCACTTGGATTATGTTTACACACAAAATGAGAATCCTTGA

Coding sequence (CDS)

ATGAACCACAATTCCCATGGCTTCTTCTTCTTCTTCTTCATCTCTTTTCTCTTCATTTTTCTTCTCTTTTCTTCACATTCTGCCTCTGCTAGTTTCCCTCCATCCAAACATGGTATAGAAGAAACCCACAGGAAGATCAGCTATGGATCAATGGTTCAATTAGGAGATTCATTGCCAGATTTCCCTCATATAAAGGGAGAGAAAGAAGTAGGAGAAGAAGAAGAAGGAGAGAAGAGGAAGATGATGTTAGAAGCTCACTTGGATTATGTTTACACACAAAATGAGAATCCTTGA

Protein sequence

MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPDFPHIKGEKEVGEEEEGEKRKMMLEAHLDYVYTQNENP*

Homology

[Close]

BLAST of CsaV3_3G036860 vs. NCBI nr
Match: XP_011651990.1 (phytosulfokines 5 [Cucumis sativus] >KGN59245.2 hypothetical protein Csa_001722 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPD 60
          MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPD
Sbjct: 1  MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPD 60

Query: 61 FPHIKGEKEVGEEEEGEKRKMMLEAHLDYVYTQNENP 98
          FPHIKGEKEVGEEEEGEKRKMMLEAHLDYVYTQNENP
Sbjct: 61 FPHIKGEKEVGEEEEGEKRKMMLEAHLDYVYTQNENP 97

[Close]

BLAST of CsaV3_3G036860 vs. NCBI nr
Match: XP_016899647.1 (PREDICTED: uncharacterized protein LOC107990603 [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35
Identity = 85/103 (82.52%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 2   NHNSHG-----FFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGD 61
           N NSHG     FFFFFFISFLFI LLFSSHSASA FPPSKHGIEETH+KISYGSMVQ GD
Sbjct: 81  NRNSHGFFFFFFFFFFFISFLFILLLFSSHSASARFPPSKHGIEETHKKISYGSMVQSGD 140

Query: 62  SLPDFPHIKGEK--EVGEEEEGEKRKMMLEAHLDYVYTQNENP 98
           S PDFPH+K EK  E  EEEEGEKRKMMLEAHLDYVYTQ+ENP
Sbjct: 141 SWPDFPHVKREKDEEEVEEEEGEKRKMMLEAHLDYVYTQHENP 183

[Close]

BLAST of CsaV3_3G036860 vs. NCBI nr
Match: XP_038906014.1 (uncharacterized protein LOC120091917 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 3.6e-29
Identity = 79/109 (72.48%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPD 60
           MN NSHGFFFFFF+SFLFIFLLFSSHSASA FP SK GIEETH+KIS+G MVQ  DS PD
Sbjct: 1   MNQNSHGFFFFFFLSFLFIFLLFSSHSASARFPSSKQGIEETHKKISHG-MVQ-ADSWPD 60

Query: 61  FPHIKGEKEVG------------EEEEGEKRKMMLEAHLDYVYTQNENP 98
           FPHI G +E G            EEEE EK KMMLEAHLDYVYTQNE P
Sbjct: 61  FPHIMGGREKGGGGGGGGEEEEEEEEEWEKGKMMLEAHLDYVYTQNEKP 107

[Close]

BLAST of CsaV3_3G036860 vs. NCBI nr
Match: KAG6580671.1 (hypothetical protein SDJN03_20673, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-23
Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPD 60
          MN +SHGFFFFFF SFLFIFLLF S SASA FP +K G+ ETH K+++G +    DS PD
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLF-SQSASARFPAAKQGLGETHEKLTHGGV--QADSWPD 60

Query: 61 FPHIKGEKEVGEEEE--GEKRKMMLEAHLDYVYTQN 95
          FPHI G +E GEEEE   EKRKMMLEAHLDYVYTQN
Sbjct: 61 FPHIIGGREKGEEEEEGWEKRKMMLEAHLDYVYTQN 93

[Close]

BLAST of CsaV3_3G036860 vs. NCBI nr
Match: XP_022935155.1 (uncharacterized protein LOC111442110 [Cucurbita moschata])

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-23
Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPD 60
          MN +SHGFFFFFF SFLFIFLLF S SASA FP +K G+ ETH K+++G +    DS PD
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLF-SQSASARFPAAKQGLGETHEKLTHGGV--QADSWPD 60

Query: 61 FPHIKGEKEVGEEEE--GEKRKMMLEAHLDYVYTQN 95
          FPHI G +E GEEEE   EKRKMMLEAHLDYVYTQN
Sbjct: 61 FPHIIGGREKGEEEEEGWEKRKMMLEAHLDYVYTQN 93

[Close]

BLAST of CsaV3_3G036860 vs. ExPASy TrEMBL
Match: A0A1S4DUI1 (Phytosulfokine-beta OS=Cucumis melo OX=3656 GN=LOC107990603 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 85/103 (82.52%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 2   NHNSHG-----FFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGD 61
           N NSHG     FFFFFFISFLFI LLFSSHSASA FPPSKHGIEETH+KISYGSMVQ GD
Sbjct: 81  NRNSHGFFFFFFFFFFFISFLFILLLFSSHSASARFPPSKHGIEETHKKISYGSMVQSGD 140

Query: 62  SLPDFPHIKGEK--EVGEEEEGEKRKMMLEAHLDYVYTQNENP 98
           S PDFPH+K EK  E  EEEEGEKRKMMLEAHLDYVYTQ+ENP
Sbjct: 141 SWPDFPHVKREKDEEEVEEEEGEKRKMMLEAHLDYVYTQHENP 183

[Close]

BLAST of CsaV3_3G036860 vs. ExPASy TrEMBL
Match: A0A0A0LEF2 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_3G750390 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.1e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 38 GIEETHRKISYGSMVQLGDSLPDFPHIKGEKEVGEEEEGEKRKMMLEAHLDYVYTQNENP 97
          GIEETHRKISYGSMVQLGDSLPDFPHIKGEKEVGEEEEGEKRKMMLEAHLDYVYTQNENP
Sbjct: 8  GIEETHRKISYGSMVQLGDSLPDFPHIKGEKEVGEEEEGEKRKMMLEAHLDYVYTQNENP 67

[Close]

BLAST of CsaV3_3G036860 vs. ExPASy TrEMBL
Match: A0A6J1F9T2 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111442110 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPD 60
          MN +SHGFFFFFF SFLFIFLLF S SASA FP +K G+ ETH K+++G +    DS PD
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLF-SQSASARFPAAKQGLGETHEKLTHGGV--QADSWPD 60

Query: 61 FPHIKGEKEVGEEEE--GEKRKMMLEAHLDYVYTQN 95
          FPHI G +E GEEEE   EKRKMMLEAHLDYVYTQN
Sbjct: 61 FPHIIGGREKGEEEEEGWEKRKMMLEAHLDYVYTQN 93

[Close]

BLAST of CsaV3_3G036860 vs. ExPASy TrEMBL
Match: A0A6J1IYI6 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111481800 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.7e-21
Identity = 66/97 (68.04%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1  MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPD 60
          MN +SHGFFFFFF SFLFIFLLF S S SA FP +K G+ ETH K+++G  V   DS  D
Sbjct: 1  MNQSSHGFFFFFF-SFLFIFLLF-SQSTSARFPAAKQGLGETHEKLTHG--VVQADSWAD 60

Query: 61 FPHIKGEKEVGEEEE---GEKRKMMLEAHLDYVYTQN 95
          FPHI G +E GEEEE    EKRKMMLEAHLDYVYTQN
Sbjct: 61 FPHIIGGREKGEEEEEEGWEKRKMMLEAHLDYVYTQN 93

[Close]

BLAST of CsaV3_3G036860 vs. ExPASy TrEMBL
Match: A0A6J1KTY7 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111498637 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 61/97 (62.89%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 1  MNHNSHGFFFFFFISFLFIFLLFSSHSASASFPPSKHGIEETHRKISYGSMVQLGDSLPD 60
          MN +SHGF  FF   + FIFLL  S SA+A F P+K G EETH K+S+G M+Q  DS PD
Sbjct: 1  MNQSSHGFSSFF---YFFIFLLL-SQSATARFLPTKQGFEETHNKLSHG-MIQ-ADSWPD 60

Query: 61 FPHIKGEKEVGEEEEGEKRKMMLEAHLDYVYTQNENP 98
          FP I  E+E  E+EE EKR+MMLEAHLDYVYTQNE P
Sbjct: 61 FPQIIREEE-EEDEEWEKRRMMLEAHLDYVYTQNEKP 90

The following BLAST results are available for this feature:

BLAST of CsaV3_3G036860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651990.1	1.5e-46	100.00	phytosulfokines 5 [Cucumis sativus] >KGN59245.2 hypothetical protein Csa_001722 ...	[more]
XP_016899647.1	2.6e-35	82.52	PREDICTED: uncharacterized protein LOC107990603 [Cucumis melo]	[more]
XP_038906014.1	3.6e-29	72.48	uncharacterized protein LOC120091917 [Benincasa hispida]	[more]
KAG6580671.1	2.3e-23	69.79	hypothetical protein SDJN03_20673, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935155.1	2.3e-23	69.79	uncharacterized protein LOC111442110 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G036860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G036860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUI1	1.3e-35	82.52	Phytosulfokine-beta OS=Cucumis melo OX=3656 GN=LOC107990603 PE=3 SV=1	[more]
A0A0A0LEF2	3.1e-26	100.00	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_3G750390 PE=3 SV=1	[more]
A0A6J1F9T2	1.1e-23	69.79	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111442110 PE=3 SV=1	[more]
A0A6J1IYI6	6.7e-21	68.04	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111481800 PE=3 SV=1	[more]
A0A6J1KTY7	2.0e-17	62.89	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111498637 PE=3 SV=1	[more]

BLAST of CsaV3_3G036860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 20..96 e-value: 1.2E-8 score: 35.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G036860.1	CsaV3_3G036860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell population proliferation
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity