Bhi12G000876 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G000876
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	RNA-binding protein 42
Location	chr12: 30512869 .. 30514978 (+)
RNA-Seq Expression	Bhi12G000876
Synteny	Bhi12G000876

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGTAGATCTGTAGAAAGAGAAAGAGGAAGACAAAGGAGTAGGGAAGCTGTTGTTCTACGGTTTGGCACTGCGATGTGGAGAAGAAGTTGCCCTTGCAAGAGATGAAATGGAGCACAAAGCAGAAACTAAAAGGAAAGCGATCCCTCGTAAAGTTGCTGAACAGAAATGGAAGGATCCTACACTTGCTGACTGGCTTGAAAGTATGTAATCTTTTCATTTCTTACCCGAATTTGTCTTATATGATTTAAAGTTATCTTTTATAGGAACCAAATCTTGACGTAGGAATGATAGCAACCACCATTTCAGAAATGGACATCATGAGTATTGGATTATTATGGTTAAACTACAAATTTTGTCCTCAAATGAGGTAATCTTGACAACTTTGCACATTCTTTGCATCTAGATTATGCAGATGATTATCGGCTGTTTTGTGGCGATCTTGGTAACGAGGTGAATGATGATGTTCTTTCTCGAGCGTTTTCACGATTTCCATCCTTTAACATGGCCAAGGTGAGTTTCTAACTTCATTCTTCTTGAACTCTATTCAGGCCTCATGTTTTTTACACAATCAATTGTATGGTGTAAACTTCTTTATTTCTTGTTCAGAATTTGATTTGAAGCCCAGATTTTTACACAATCAATTTGTATGGTGTAAACTTCTTTATTATTATGGATTTATGAGTTTTGGTAATTAGTGCATCAGATCTGTTCCAATCTTCGAGCTCTGGGTCAAATTCGTTCAATCTTTGATTTCCTTATTGCTTTCCATTCTTTGCACTTTTTCTTTTTGTTTTGATAAACTAGGTTATTTTTCATTTGTAGATCTATAAAGTGTCAACGGCAAAATTAGGGTATGTAGATCTAGGTTAGTTTTTCTATTTCTTTTTTTACGCAAGTCATACTCACTCACACACATTTGCTTATAATTATGGAATATGCAGTTGGGAGAGAACTTTTTGGAAAAATATGCAATGTCGGAAGATTTAATGAAGATGAGGTAAATTAGATTACTATGTGGCAACTATCGCTTTTATATTTTTGTATTTGGTAAAATAAATTTCTAAAATAAAGTATTTTTCAAGACTATACTTTGGTTAGTTGATGACATTTGTAGATTTCTTAAATAAAGCATTTTTCAAGGCTATACTTTAGATGTTTATGAGAAATGCAAGAAGAGAGAGGTATTTTCTTAACTTAGTTATGTGTAAATCTTGATCTATTGATTGATTGTTGGTTGTTTAGATCTTTTTATTGCTCCATAGAACTACATGTTAAATTTGGATAGAGAAAGTACTTAAGCTATTCAAGTCTTGTTCTCTTTGTGGTAATCGAATTTTAGTTTGAAGTTCTGATTTTCCCTTGGATCATCCTATTGCATTCTCCCCTTCTTTCTTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTCTTTCTAGTTTGCTTTGATCTTACTTGGAATTTAGTTTAGGGATAAATCTCCGCATTTCTTGTAGGCACTCTTGCTTGGTGTATTTTTTTGGAAACAAGAAATTGTTGAAAAATGATCAAGTTCAAACTTTTGTAAAAGCTAGTAGAAGTAGCGTTCCATTTTCCAAAGGAAGGTTCACTTTACCCATTTTGAAGCAAGCAAAATAAGATTATATTGCATTTATTAACCACAAGCAACTTGGTATGAGTGATTTCCTTCATGGCATACACTTGTGCATGATCTATTTTCCTCTTAAACTTGTTTAGTTAATATGATTGGTCTAGTTGCCTAAGAAATCTAAAATGAAAAAAGAACTCCTTTGCTGAATTTATTGTTTGGATTCTTTATAAGATTTAAATGAAGTTGCAAGTTTGTTTACTAATTTTTAAGTTTTGGATTTATATTTTGAAGTTATTCTTTTTTTACTCTTGCAAATCTTGATATTTATCATATTTTTCTCAACTATGTTGTTAATTGTTGTCATACTTAAAAATTTCTCAAGGTCCTGGTGGAAGGTCGAGTTTTGGCAATGGAGTTGGTAGCTATGGCAGAGGAGCAACAACTCAAACTTTACTTGGAAAGTATCGTTTTACACGCAATTCAATTAATTTTTAGTGGAATGAGTTACGAGCTTGATTGA

mRNA sequence

ATGGGTCGTAGATCTGTAGAAAGAGAAAGAGGAAGACAAAGGAGTAGGGAAGCTGTTGTTCTACGGTTTGGCACTGCGATAGATGAAATGGAGCACAAAGCAGAAACTAAAAGGAAAGCGATCCCTCGTAAAGTTGCTGAACAGAAATGGAAGGATCCTACACTTGCTGACTGGCTTGAAAATTATGCAGATGATTATCGGCTGTTTTGTGGCGATCTTGGTAACGAGGTGAATGATGATGTTCTTTCTCGAGCGTTTTCACGATTTCCATCCTTTAACATGGCCAAGATCTATAAAGTGTCAACGGCAAAATTAGGGTATGTAGATCTAGTTGGGAGAGAACTTTTTGGAAAAATATGCAATGTCGGAAGATTTAATGAAGATGAGGTCCTGGTGGAAGGTCGAGTTTTGGCAATGGAGTTGGTAGCTATGGCAGAGGAGCAACAACTCAAACTTTACTTGGAAAGTATCGTTTTACACGCAATTCAATTAATTTTTAGTGGAATGAGTTACGAGCTTGATTGA

Coding sequence (CDS)

ATGGGTCGTAGATCTGTAGAAAGAGAAAGAGGAAGACAAAGGAGTAGGGAAGCTGTTGTTCTACGGTTTGGCACTGCGATAGATGAAATGGAGCACAAAGCAGAAACTAAAAGGAAAGCGATCCCTCGTAAAGTTGCTGAACAGAAATGGAAGGATCCTACACTTGCTGACTGGCTTGAAAATTATGCAGATGATTATCGGCTGTTTTGTGGCGATCTTGGTAACGAGGTGAATGATGATGTTCTTTCTCGAGCGTTTTCACGATTTCCATCCTTTAACATGGCCAAGATCTATAAAGTGTCAACGGCAAAATTAGGGTATGTAGATCTAGTTGGGAGAGAACTTTTTGGAAAAATATGCAATGTCGGAAGATTTAATGAAGATGAGGTCCTGGTGGAAGGTCGAGTTTTGGCAATGGAGTTGGTAGCTATGGCAGAGGAGCAACAACTCAAACTTTACTTGGAAAGTATCGTTTTACACGCAATTCAATTAATTTTTAGTGGAATGAGTTACGAGCTTGATTGA

Protein sequence

MGRRSVERERGRQRSREAVVLRFGTAIDEMEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMAKIYKVSTAKLGYVDLVGRELFGKICNVGRFNEDEVLVEGRVLAMELVAMAEEQQLKLYLESIVLHAIQLIFSGMSYELD

Homology

[Close]

BLAST of Bhi12G000876 vs. TAIR 10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 114.8 bits (286), Expect = 7.1e-26
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRA 85
           A  E EHKAETK++AIPRK A Q W+DPTL++W EN   DYRLFCGDLGNEVNDDVLS+A
Sbjct: 100 ASSETEHKAETKKRAIPRKAAGQSWEDPTLSEWPEN---DYRLFCGDLGNEVNDDVLSKA 159

Query: 86  FSRFPSFNMAKIYK 100
           F+RFP+FNMAK+ +
Sbjct: 160 FARFPTFNMAKVIR 170

[Close]

BLAST of Bhi12G000876 vs. ExPASy Swiss-Prot
Match: Q0P5L0 (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.4e-15
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKV-------AEQKWKDPTLADWLENYADDYRLFCGDLGNEVN 85
           A++  E  +E K+K  P K+       A   W+DP+L +W    ADD+R+FCGDLGNEVN
Sbjct: 305 ALEVPEPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW---DADDFRIFCGDLGNEVN 364

Query: 86  DDVLSRAFSRFPSFNMAKIYK 100
           DD+L+RAFSRFPSF  AK+ +
Sbjct: 365 DDILARAFSRFPSFLKAKVIR 382

[Close]

BLAST of Bhi12G000876 vs. ExPASy Swiss-Prot
Match: Q9BTD8 (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKV-------AEQKWKDPTLADWLENYADDYRLFCGDLGNEVN 85
           A++  E   E K+K  P K+       A   W+DP+L +W    ADD+R+FCGDLGNEVN
Sbjct: 337 ALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW---DADDFRIFCGDLGNEVN 396

Query: 86  DDVLSRAFSRFPSFNMAKIYK 100
           DD+L+RAFSRFPSF  AK+ +
Sbjct: 397 DDILARAFSRFPSFLKAKVIR 414

[Close]

BLAST of Bhi12G000876 vs. ExPASy Swiss-Prot
Match: Q91V81 (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKV-------AEQKWKDPTLADWLENYADDYRLFCGDLGNEVN 85
           A++  E   E K+K  P K+       A   W+DP+L +W    ADD+R+FCGDLGNEVN
Sbjct: 335 ALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW---DADDFRIFCGDLGNEVN 394

Query: 86  DDVLSRAFSRFPSFNMAKIYK 100
           DD+L+RAFSRFPSF  AK+ +
Sbjct: 395 DDILARAFSRFPSFLKAKVIR 412

[Close]

BLAST of Bhi12G000876 vs. ExPASy Swiss-Prot
Match: Q6AXT7 (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKV-------AEQKWKDPTLADWLENYADDYRLFCGDLGNEVN 85
           A++  E   E K+K  P K+       A   W+DP+L +W    ADD+R+FCGDLGNEVN
Sbjct: 335 ALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEW---DADDFRIFCGDLGNEVN 394

Query: 86  DDVLSRAFSRFPSFNMAKIYK 100
           DD+L+RAFSRFPSF  AK+ +
Sbjct: 395 DDILARAFSRFPSFLKAKVIR 412

[Close]

BLAST of Bhi12G000876 vs. ExPASy Swiss-Prot
Match: A2VDB3 (RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.7e-13
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 30  MEHKAETKRKAIPRKV-------AEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVL 89
           +E   E K+KA P K+       A   W+D +L +W     DD+R+FCGDLGNEVNDD+L
Sbjct: 253 LEPVQEDKKKAKPEKLKRCIRTAAGTSWEDQSLLEW---EPDDFRIFCGDLGNEVNDDIL 312

Query: 90  SRAFSRFPSFNMAKIYK 100
           +RAFSR+PSF  AK+ +
Sbjct: 313 ARAFSRYPSFLRAKVIR 326

[Close]

BLAST of Bhi12G000876 vs. NCBI nr
Match: XP_038875474.1 (RNA-binding protein 42-like isoform X1 [Benincasa hispida])

HSP 1 Score: 205.7 bits (522), Expect = 3.3e-49
Identity = 112/145 (77.24%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 30  MEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRF 89
           MEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRF
Sbjct: 1   MEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRF 60

Query: 90  PSFNMAKIYKVSTAKLGYVDLVGRELFGKICNVGRFNEDEVLVEGRVLAMELVAMAEEQQ 149
           PSFNMAK                                 VLVEGRVLAMELVAMAEEQQ
Sbjct: 61  PSFNMAK---------------------------------VLVEGRVLAMELVAMAEEQQ 112

Query: 150 LKLYLESIVLHAIQLIFSGMSYELD 175
           LKLYLESIVLHAIQLIFSGMSYELD
Sbjct: 121 LKLYLESIVLHAIQLIFSGMSYELD 112

[Close]

BLAST of Bhi12G000876 vs. NCBI nr
Match: XP_038875476.1 (RNA-binding protein 42-like isoform X3 [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 30  MEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRF 89
           MEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRF
Sbjct: 1   MEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRF 60

Query: 90  PSFNMAKIYKVSTAKLGY 108
           PSFNMAKIYKVSTAKLG+
Sbjct: 61  PSFNMAKIYKVSTAKLGW 78

[Close]

BLAST of Bhi12G000876 vs. NCBI nr
Match: XP_038875475.1 (RNA-binding protein 42-like isoform X2 [Benincasa hispida])

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 30 MEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRF 89
          MEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRF
Sbjct: 1  MEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRAFSRF 60

Query: 90 PSFNMAKI 98
          PSFNMAK+
Sbjct: 61 PSFNMAKL 68

[Close]

BLAST of Bhi12G000876 vs. NCBI nr
Match: XP_038877084.1 (RNA-binding protein 42-like [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 21  LRFGTAIDEMEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDD 80
           ++   A DEMEHKAETKRKAIPRK A QKW+DPTLADW EN   DYRLFCGDLGNEVNDD
Sbjct: 82  VKVALARDEMEHKAETKRKAIPRKAAGQKWEDPTLADWPEN---DYRLFCGDLGNEVNDD 141

Query: 81  VLSRAFSRFPSFNMAKIYK 100
           VLSRAFS+FPSFNMA++ +
Sbjct: 142 VLSRAFSQFPSFNMARVVR 157

[Close]

BLAST of Bhi12G000876 vs. NCBI nr
Match: XP_031282055.1 (RNA-binding protein 42 [Pistacia vera])

HSP 1 Score: 121.3 bits (303), Expect = 8.1e-24
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRA 85
           A  E+EHKAETK+KAIPRK A Q W+DPTLADW EN   DYRLFCGDLGNEVNDDVLS+A
Sbjct: 103 ASSEIEHKAETKKKAIPRKAAGQTWEDPTLADWPEN---DYRLFCGDLGNEVNDDVLSKA 162

Query: 86  FSRFPSFNMAKIYK 100
           FSRFPSFNMAK+ +
Sbjct: 163 FSRFPSFNMAKVVR 173

[Close]

BLAST of Bhi12G000876 vs. ExPASy TrEMBL
Match: F6HBY9 (RRM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_09s0018g01710 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.7e-24
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRA 85
           A  E+EHKAETK++AIPRKVA Q W+DPTLADW EN   DYRLFCGDLGNEVNDDVLS+A
Sbjct: 112 ASSEIEHKAETKKRAIPRKVAGQTWEDPTLADWPEN---DYRLFCGDLGNEVNDDVLSKA 171

Query: 86  FSRFPSFNMAKIYK 100
           FSRFPSFNMA++ +
Sbjct: 172 FSRFPSFNMARVVR 182

[Close]

BLAST of Bhi12G000876 vs. ExPASy TrEMBL
Match: A0A5C7IBH3 (RRM domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_007317 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-24
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRA 85
           A  E+EHKAETK+KAIPRK A Q W+DPTLADW EN   DYRLFCGDLGNEVNDDVLS+A
Sbjct: 105 ASSEIEHKAETKKKAIPRKAAGQAWEDPTLADWPEN---DYRLFCGDLGNEVNDDVLSKA 164

Query: 86  FSRFPSFNMAKIYK 100
           FSRFP+FNMAK+ +
Sbjct: 165 FSRFPTFNMAKVVR 175

[Close]

BLAST of Bhi12G000876 vs. ExPASy TrEMBL
Match: A0A2I0HKE8 (RNA-binding protein 42 OS=Punica granatum OX=22663 GN=LOC116207169 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRA 85
           A  E+EHKAETK+KA+PRK A Q W+DPTLA+W EN   DYRLFCGDLGNEVNDDVLS+A
Sbjct: 101 ASSEIEHKAETKKKAVPRKAAGQSWEDPTLAEWPEN---DYRLFCGDLGNEVNDDVLSKA 160

Query: 86  FSRFPSFNMAKIYK 100
           FSRFPSFNMAK+ +
Sbjct: 161 FSRFPSFNMAKVVR 171

[Close]

BLAST of Bhi12G000876 vs. ExPASy TrEMBL
Match: A0A5B7AWH2 (Putative RNA-binding protein 42 OS=Davidia involucrata OX=16924 GN=Din_030508 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRA 85
           A  E+EHKAETK+KAIPRK A Q W+DPTLA+W EN   DYRLFCGDLGNEVNDDVLS+A
Sbjct: 117 ASSEIEHKAETKKKAIPRKAAGQTWEDPTLAEWPEN---DYRLFCGDLGNEVNDDVLSKA 176

Query: 86  FSRFPSFNMAKIYK 100
           FSRFPSFNMAK+ +
Sbjct: 177 FSRFPSFNMAKVVR 187

[Close]

BLAST of Bhi12G000876 vs. ExPASy TrEMBL
Match: A0A5B7AYN4 (Putative RNA-binding protein 42 OS=Davidia involucrata OX=16924 GN=Din_030507 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 26  AIDEMEHKAETKRKAIPRKVAEQKWKDPTLADWLENYADDYRLFCGDLGNEVNDDVLSRA 85
           A  E+EHKAETK+KAIPRK A Q W+DPTLA+W EN   DYRLFCGDLGNEVNDDVLS+A
Sbjct: 119 ASSEIEHKAETKKKAIPRKAAGQTWEDPTLAEWPEN---DYRLFCGDLGNEVNDDVLSKA 178

Query: 86  FSRFPSFNMAKIYK 100
           FSRFPSFNMAK+ +
Sbjct: 179 FSRFPSFNMAKVVR 189

The following BLAST results are available for this feature:

BLAST of Bhi12G000876 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04500.1	7.1e-26	71.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Bhi12G000876 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0P5L0	9.4e-15	50.62	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1	[more]
Q9BTD8	1.2e-14	50.62	RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1	[more]
Q91V81	1.2e-14	50.62	RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2	[more]
Q6AXT7	1.2e-14	50.62	RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2	[more]
A2VDB3	6.7e-13	49.35	RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1	[more]

BLAST of Bhi12G000876 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875474.1	3.3e-49	77.24	RNA-binding protein 42-like isoform X1 [Benincasa hispida]	[more]
XP_038875476.1	1.9e-36	98.72	RNA-binding protein 42-like isoform X3 [Benincasa hispida]	[more]
XP_038875475.1	6.9e-31	98.53	RNA-binding protein 42-like isoform X2 [Benincasa hispida]	[more]
XP_038877084.1	1.1e-25	77.22	RNA-binding protein 42-like [Benincasa hispida]	[more]
XP_031282055.1	8.1e-24	78.38	RNA-binding protein 42 [Pistacia vera]	[more]

BLAST of Bhi12G000876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
F6HBY9	6.7e-24	77.03	RRM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_09s0018g01710 PE...	[more]
A0A5C7IBH3	8.8e-24	77.03	RRM domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_007317 PE=4...	[more]
A0A2I0HKE8	1.1e-23	75.68	RNA-binding protein 42 OS=Punica granatum OX=22663 GN=LOC116207169 PE=4 SV=1	[more]
A0A5B7AWH2	1.1e-23	77.03	Putative RNA-binding protein 42 OS=Davidia involucrata OX=16924 GN=Din_030508 PE...	[more]
A0A5B7AYN4	1.1e-23	77.03	Putative RNA-binding protein 42 OS=Davidia involucrata OX=16924 GN=Din_030507 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47640:SF43	RNA-BINDING PROTEIN 42-LIKE	coord: 26..99
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 26..99
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 50..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000876	Bhi12M000876	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding