Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGTCATGTCACCACGTATACCAGCAAACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGAACCAGTACCCGAGAGTGCAAACTGGAGCAGGAAATGAGCAATTTTTTTAGATCTGCACAGGAGGTAGGTAGGCCAGAGAGAGTAGGGCCTAGTGATCTAGAAAAGATGTATGGAATAGAACGG
mRNA sequence
GAGTCATGTCACCACGTATACCAGCAAACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGAACCAGTACCCGAGAGTGCAAACTGGAGCAGGAAATGAGCAATTTTTTTAGATCTGCACAGGAGGTAGGTAGGCCAGAGAGAGTAGGGCCTAGTGATCTAGAAAAGATGTATGGAATAGAACGG
Coding sequence (CDS)
GAGTCATGTCACCACGTATACCAGCAAACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGAACCAGTACCCGAGAGTGCAAACTGGAGCAGGAAATGAGCAATTTTTTTAGATCTGCACAGGAGGTAGGTAGGCCAGAGAGAGTAGGGCCTAGTGATCTAGAAAAGATGTATGGAATAGAACGG
Protein sequence
SHVTTYTSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMYGIER
Homology
BLAST of Bhi12G002166 vs. NCBI nr
Match:
TYK29162.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 90.1 bits (222), Expect = 8.1e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TSKR RQNQDGTQDPTQGQSERG+ST + E F RSAQE+GRPE+ GPSD EKMY
Sbjct: 5 TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 64
Query: 67 GIER 71
GIER
Sbjct: 65 GIER 68
BLAST of Bhi12G002166 vs. NCBI nr
Match:
KAA0056353.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 90.1 bits (222), Expect = 8.1e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TSKR RQNQDGTQDPTQGQSERG+ST + E F RSAQE+GRPE+ GPSD EKMY
Sbjct: 69 TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 128
Query: 67 GIER 71
GIER
Sbjct: 129 GIER 132
BLAST of Bhi12G002166 vs. NCBI nr
Match:
XP_016901625.1 (PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo])
HSP 1 Score: 90.1 bits (222), Expect = 8.1e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TSKR RQNQDGTQDPTQGQSERG+ST + E F RSAQE+GRPE+ GPSD EKMY
Sbjct: 5 TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 64
Query: 67 GIER 71
GIER
Sbjct: 65 GIER 68
BLAST of Bhi12G002166 vs. NCBI nr
Match:
KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 87.4 bits (215), Expect = 5.2e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TS+RRRQNQDGTQDPTQGQSERG+ST + E F RSAQE+GRPE+ GPSD EKMY
Sbjct: 228 TSRRRRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPEKAGPSDPEKMY 287
Query: 67 GIER 71
IER
Sbjct: 288 VIER 291
BLAST of Bhi12G002166 vs. NCBI nr
Match:
TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 87.4 bits (215), Expect = 5.2e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TS+RRRQNQDGTQDPTQGQSERG+ST + E F RSAQE+GRPE+ GPSD EKMY
Sbjct: 228 TSRRRRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPEKAGPSDPEKMY 287
Query: 67 GIER 71
IER
Sbjct: 288 VIER 291
BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match:
A0A5A7UKD3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G00860 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TSKR RQNQDGTQDPTQGQSERG+ST + E F RSAQE+GRPE+ GPSD EKMY
Sbjct: 69 TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 128
Query: 67 GIER 71
GIER
Sbjct: 129 GIER 132
BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match:
A0A5D3DZW6 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G003220 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TSKR RQNQDGTQDPTQGQSERG+ST + E F RSAQE+GRPE+ GPSD EKMY
Sbjct: 5 TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 64
Query: 67 GIER 71
GIER
Sbjct: 65 GIER 68
BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match:
A0A1S4E0X6 (uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TSKR RQNQDGTQDPTQGQSERG+ST + E F RSAQE+GRPE+ GPSD EKMY
Sbjct: 5 TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 64
Query: 67 GIER 71
GIER
Sbjct: 65 GIER 68
BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match:
A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TS+RRRQNQDGTQDPTQGQSERG+ST + E F RSAQE+GRPE+ GPSD EKMY
Sbjct: 228 TSRRRRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPEKAGPSDPEKMY 287
Query: 67 GIER 71
IER
Sbjct: 288 VIER 291
BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match:
A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 7 TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
TS+R +QNQD TQDPTQGQSERG+ST + E F RSAQE+GRPERVGPSD EKMY
Sbjct: 109 TSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDPEKMY 168
Query: 67 GIER 71
GIER
Sbjct: 169 GIER 172
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
TYK29162.1 | 8.1e-15 | 73.44 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
KAA0056353.1 | 8.1e-15 | 73.44 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
XP_016901625.1 | 8.1e-15 | 73.44 | PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo] | [more] |
KAA0042035.1 | 5.2e-14 | 71.88 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
TYK17971.1 | 5.2e-14 | 71.88 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UKD3 | 3.9e-15 | 73.44 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5D3DZW6 | 3.9e-15 | 73.44 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A1S4E0X6 | 3.9e-15 | 73.44 | uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=... | [more] |
A0A5A7TKT0 | 2.5e-14 | 71.88 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... | [more] |
A0A5D3BMJ4 | 2.5e-14 | 71.88 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |