Bhi12G002166 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G002166
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr12: 76714428 .. 76714638 (-)
RNA-Seq Expression	Bhi12G002166
Synteny	Bhi12G002166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTCATGTCACCACGTATACCAGCAAACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGAACCAGTACCCGAGAGTGCAAACTGGAGCAGGAAATGAGCAATTTTTTTAGATCTGCACAGGAGGTAGGTAGGCCAGAGAGAGTAGGGCCTAGTGATCTAGAAAAGATGTATGGAATAGAACGG

mRNA sequence

GAGTCATGTCACCACGTATACCAGCAAACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGAACCAGTACCCGAGAGTGCAAACTGGAGCAGGAAATGAGCAATTTTTTTAGATCTGCACAGGAGGTAGGTAGGCCAGAGAGAGTAGGGCCTAGTGATCTAGAAAAGATGTATGGAATAGAACGG

Coding sequence (CDS)

GAGTCATGTCACCACGTATACCAGCAAACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGAACCAGTACCCGAGAGTGCAAACTGGAGCAGGAAATGAGCAATTTTTTTAGATCTGCACAGGAGGTAGGTAGGCCAGAGAGAGTAGGGCCTAGTGATCTAGAAAAGATGTATGGAATAGAACGG

Protein sequence

SHVTTYTSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMYGIER

Homology

[Close]

BLAST of Bhi12G002166 vs. NCBI nr
Match: TYK29162.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.1e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7  TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
          TSKR RQNQDGTQDPTQGQSERG+ST   + E     F RSAQE+GRPE+ GPSD EKMY
Sbjct: 5  TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 64

Query: 67 GIER 71
          GIER
Sbjct: 65 GIER 68

[Close]

BLAST of Bhi12G002166 vs. NCBI nr
Match: KAA0056353.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.1e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7   TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
           TSKR RQNQDGTQDPTQGQSERG+ST   + E     F RSAQE+GRPE+ GPSD EKMY
Sbjct: 69  TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 128

Query: 67  GIER 71
           GIER
Sbjct: 129 GIER 132

[Close]

BLAST of Bhi12G002166 vs. NCBI nr
Match: XP_016901625.1 (PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 8.1e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7  TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
          TSKR RQNQDGTQDPTQGQSERG+ST   + E     F RSAQE+GRPE+ GPSD EKMY
Sbjct: 5  TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 64

Query: 67 GIER 71
          GIER
Sbjct: 65 GIER 68

[Close]

BLAST of Bhi12G002166 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 5.2e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7   TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
           TS+RRRQNQDGTQDPTQGQSERG+ST   + E     F RSAQE+GRPE+ GPSD EKMY
Sbjct: 228 TSRRRRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPEKAGPSDPEKMY 287

Query: 67  GIER 71
            IER
Sbjct: 288 VIER 291

[Close]

BLAST of Bhi12G002166 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 5.2e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7   TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
           TS+RRRQNQDGTQDPTQGQSERG+ST   + E     F RSAQE+GRPE+ GPSD EKMY
Sbjct: 228 TSRRRRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPEKAGPSDPEKMY 287

Query: 67  GIER 71
            IER
Sbjct: 288 VIER 291

[Close]

BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match: A0A5A7UKD3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G00860 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7   TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
           TSKR RQNQDGTQDPTQGQSERG+ST   + E     F RSAQE+GRPE+ GPSD EKMY
Sbjct: 69  TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 128

Query: 67  GIER 71
           GIER
Sbjct: 129 GIER 132

[Close]

BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match: A0A5D3DZW6 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G003220 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7  TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
          TSKR RQNQDGTQDPTQGQSERG+ST   + E     F RSAQE+GRPE+ GPSD EKMY
Sbjct: 5  TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 64

Query: 67 GIER 71
          GIER
Sbjct: 65 GIER 68

[Close]

BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match: A0A1S4E0X6 (uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7  TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
          TSKR RQNQDGTQDPTQGQSERG+ST   + E     F RSAQE+GRPE+ GPSD EKMY
Sbjct: 5  TSKRHRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFSRSAQEIGRPEKAGPSDPEKMY 64

Query: 67 GIER 71
          GIER
Sbjct: 65 GIER 68

[Close]

BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7   TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
           TS+RRRQNQDGTQDPTQGQSERG+ST   + E     F RSAQE+GRPE+ GPSD EKMY
Sbjct: 228 TSRRRRQNQDGTQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPEKAGPSDPEKMY 287

Query: 67  GIER 71
            IER
Sbjct: 288 VIER 291

[Close]

BLAST of Bhi12G002166 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 7   TSKRRRQNQDGTQDPTQGQSERGTSTRECKLEQEMSNFFRSAQEVGRPERVGPSDLEKMY 66
           TS+R +QNQD TQDPTQGQSERG+ST   + E     F RSAQE+GRPERVGPSD EKMY
Sbjct: 109 TSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDPEKMY 168

Query: 67  GIER 71
           GIER
Sbjct: 169 GIER 172

The following BLAST results are available for this feature:

BLAST of Bhi12G002166 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G002166 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G002166 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29162.1	8.1e-15	73.44	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0056353.1	8.1e-15	73.44	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
XP_016901625.1	8.1e-15	73.44	PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo]	[more]
KAA0042035.1	5.2e-14	71.88	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK17971.1	5.2e-14	71.88	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Bhi12G002166 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKD3	3.9e-15	73.44	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DZW6	3.9e-15	73.44	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S4E0X6	3.9e-15	73.44	uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=...	[more]
A0A5A7TKT0	2.5e-14	71.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3BMJ4	2.5e-14	71.88	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M002166	Bhi12M002166	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding