Bhi09M001162 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi09M001162
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Photosystem II CP47 reaction center protein
Location	chr9: 35406538 .. 35406887 (-)
Sequence length	350
RNA-Seq Expression	Bhi09M001162
Synteny	Bhi09M001162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAGGATTCCCCGAATATTGGGTAGTTGTTGTTAAACCAGGTAGAATACTGTATGAAATGAATGGAGTAGCCAAAAATATAGCCATAAAAGCTATTTCAATAACAGCATATAAAGGAATTGGTAAATTCTATTTAGACTTATGGAGAAATAGCCCCGCAACTTTGGGAGAACGGGTGCCTCCTCATAAAGGGGGTCGCAGTGACCAGCCTGGAGGTCCGGGAATATGGGTATTTGATCCTTATGGATTAATCGGAAGCATACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGAAATAGCCTCGCATCATATTCCAGTAGAATAG

mRNA sequence

GGAAAGGATTCCCCGAATATTGGGTAGTTGTTGTTAAACCAGGTAGAATACTGTATGAAATGAATGGAGTAGCCAAAAATATAGCCATAAAAGCTATTTCAATAACAGCATATAAAGGAATTGGTAAATTCTATTTAGACTTATGGAGAAATAGCCCCGCAACTTTGGGAGAACGGGTGCCTCCTCATAAAGGGGGTCGCAGTGACCAGCCTGGAGGTCCGGGAATATGGGTATTTGATCCTTATGGATTAATCGGAAGCATACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGAAATAGCCTCGCATCATATTCCAGTAGAATAG

Coding sequence (CDS)

GGAAAGGATTCCCCGAATATTGGGTAGTTGTTGTTAAACCAGGTAGAATACTGTATGAAATGAATGGAGTAGCCAAAAATATAGCCATAAAAGCTATTTCAATAACAGCATATAAAGGAATTGGTAAATTCTATTTAGACTTATGGAGAAATAGCCCCGCAACTTTGGGAGAACGGGTGCCTCCTCATAAAGGGGGTCGCAGTGACCAGCCTGGAGGTCCGGGAATATGGGTATTTGATCCTTATGGATTAATCGGAAGCATACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGAAATAGCCTCGCATCATATTCCAGTAGAATAG

Protein sequence

KGFPEYWVVVVKPGRILYEMNGVAKNIAIKAISITAYKGIGKFYLDLWRNSPATLGERVPPHKGGRSDQPGGPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHIPVE

Homology

[Close]

BLAST of Bhi09M001162 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 84.0 bits (206), Expect = 8.9e-17
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL G +Q VNPAWGVEGFDPFVPG IASHHI
Sbjct: 163 GPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHI 203

[Close]

BLAST of Bhi09M001162 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-10
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   KGFPEYWVVVVKPGRILYEMNGVAKNIAIKAISITAYK 39
           KG PEYWV VVKPG+ILYEM GV +NIA KAISI A K
Sbjct: 87  KGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASK 124

[Close]

BLAST of Bhi09M001162 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1   KGFPEYWVVVVKPGRILYEMNGVAKNIAIKAISITAYK 39
           KG P +WV VVKPG+I+YEM GV++ +A +AISI A K
Sbjct: 914 KGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIAASK 951

[Close]

BLAST of Bhi09M001162 vs. ExPASy Swiss-Prot
Match: Q2QD63 (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-16
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL G +QAVNPAWGVEGFDPFVPG IASHHI
Sbjct: 163 GPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

[Close]

BLAST of Bhi09M001162 vs. ExPASy Swiss-Prot
Match: Q09WZ1 (Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-16
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL G +QAVNPAWGVEGFDPFVPG IASHHI
Sbjct: 163 GPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

[Close]

BLAST of Bhi09M001162 vs. ExPASy Swiss-Prot
Match: A6MM62 (Photosystem II CP47 reaction center protein OS=Buxus microphylla OX=153571 GN=psbB PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-16
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL G +Q+VNPAWGVEGFDPFVPG IASHHI
Sbjct: 163 GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHI 203

[Close]

BLAST of Bhi09M001162 vs. ExPASy Swiss-Prot
Match: Q09MF1 (Photosystem II CP47 reaction center protein OS=Citrus sinensis OX=2711 GN=psbB PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-16
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL G +Q+VNPAWGVEGFDPFVPG IASHHI
Sbjct: 163 GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHI 203

[Close]

BLAST of Bhi09M001162 vs. ExPASy Swiss-Prot
Match: Q0G9T6 (Photosystem II CP47 reaction center protein OS=Daucus carota OX=4039 GN=psbB PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-16
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL G +Q+VNPAWGVEGFDPFVPG IASHHI
Sbjct: 163 GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHI 203

[Close]

BLAST of Bhi09M001162 vs. ExPASy TrEMBL
Match: A0A7S6VG91 (Photosystem II 47 kDa protein OS=Celtis julianae OX=1817789 GN=psbB PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.2e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL GS+QAVNPAWGVEGFDPFVPG IASHHI
Sbjct: 163 GPGIWVSDPYGLTGSVQAVNPAWGVEGFDPFVPGGIASHHI 203

[Close]

BLAST of Bhi09M001162 vs. ExPASy TrEMBL
Match: A0A6H0N615 (Photosystem II CP47 reaction center protein OS=Celtis sinensis OX=63053 GN=psbB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.2e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL GS+QAVNPAWGVEGFDPFVPG IASHHI
Sbjct: 163 GPGIWVSDPYGLTGSVQAVNPAWGVEGFDPFVPGGIASHHI 203

[Close]

BLAST of Bhi09M001162 vs. ExPASy TrEMBL
Match: A9XVA7 (Photosystem II CP47 reaction center protein (Fragment) OS=Celtis occidentalis OX=228587 GN=psbB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.2e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL GS+QAVNPAWGVEGFDPFVPG IASHHI
Sbjct: 127 GPGIWVSDPYGLTGSVQAVNPAWGVEGFDPFVPGGIASHHI 167

[Close]

BLAST of Bhi09M001162 vs. ExPASy TrEMBL
Match: A0A7D0H387 (Photosystem II CP47 reaction center protein OS=Celtis tetrandra OX=1037060 GN=psbB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.2e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL GS+QAVNPAWGVEGFDPFVPG IASHHI
Sbjct: 163 GPGIWVSDPYGLTGSVQAVNPAWGVEGFDPFVPGGIASHHI 203

[Close]

BLAST of Bhi09M001162 vs. ExPASy TrEMBL
Match: F8TRE6 (Photosystem II CP47 reaction center protein (Fragment) OS=Celtis tetrandra OX=1037060 GN=psbB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.2e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 72  GPGIWVFDPYGLIGSIQAVNPAWGVEGFDPFVPGEIASHHI 113
           GPGIWV DPYGL GS+QAVNPAWGVEGFDPFVPG IASHHI
Sbjct: 133 GPGIWVSDPYGLTGSVQAVNPAWGVEGFDPFVPGGIASHHI 173

The following BLAST results are available for this feature:

BLAST of Bhi09M001162 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	8.9e-17	85.37	photosystem II reaction center protein B	[more]
ATCG00790.1	8.0e-10	76.32	ribosomal protein L16	[more]
AT2G28830.1	2.2e-07	60.53	PLANT U-BOX 12	[more]

BLAST of Bhi09M001162 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD63	4.3e-16	87.80	Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB P...	[more]
Q09WZ1	4.3e-16	87.80	Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE...	[more]
A6MM62	7.3e-16	85.37	Photosystem II CP47 reaction center protein OS=Buxus microphylla OX=153571 GN=ps...	[more]
Q09MF1	7.3e-16	85.37	Photosystem II CP47 reaction center protein OS=Citrus sinensis OX=2711 GN=psbB P...	[more]
Q0G9T6	7.3e-16	85.37	Photosystem II CP47 reaction center protein OS=Daucus carota OX=4039 GN=psbB PE=...	[more]

BLAST of Bhi09M001162 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7S6VG91	4.2e-14	90.24	Photosystem II 47 kDa protein OS=Celtis julianae OX=1817789 GN=psbB PE=4 SV=1	[more]
A0A6H0N615	4.2e-14	90.24	Photosystem II CP47 reaction center protein OS=Celtis sinensis OX=63053 GN=psbB ...	[more]
A9XVA7	4.2e-14	90.24	Photosystem II CP47 reaction center protein (Fragment) OS=Celtis occidentalis OX...	[more]
A0A7D0H387	4.2e-14	90.24	Photosystem II CP47 reaction center protein OS=Celtis tetrandra OX=1037060 GN=ps...	[more]
F8TRE6	4.2e-14	90.24	Photosystem II CP47 reaction center protein (Fragment) OS=Celtis tetrandra OX=10...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 72..113 e-value: 3.5E-9 score: 35.9
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 72..112
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..51 e-value: 1.5E-8 score: 36.6
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..38
None	No IPR available	PANTHER	PTHR33180:SF20	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 72..112
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 72..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G001162	Bhi09G001162	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M001162.exon1	Bhi09M001162.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M001162	cds.Bhi09M001162	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M001162	Bhi09M001162-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0006412	translation
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity