Bhi08G000744 (gene) Wax gourd (B227) v1

Overview
NameBhi08G000744
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr8: 28651349 .. 28651540 (-)
RNA-Seq ExpressionBhi08G000744
SyntenyBhi08G000744
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTAGTGGACTAAGGCTAGGTACAAGCACTTTCAACACTTTGATAAAAGGATATGGCATTGCCGGTAAGCCTGAAGAAACTATAGAACTGCTGGACTTGATGTACAAAGAGGAAAATTTGAAACTCAATCTGAGAACTTGTAATGTACCCGTCAAAGCATGGTGTAAGAAGAAGAAAATAGCATAG

mRNA sequence

ATGAAGGCTAGTGGACTAAGGCTAGGTACAAGCACTTTCAACACTTTGATAAAAGGATATGGCATTGCCGGTAAGCCTGAAGAAACTATAGAACTGCTGGACTTGATGTACAAAGAGGAAAATTTGAAACTCAATCTGAGAACTTGTAATGTACCCGTCAAAGCATGGTGTAAGAAGAAGAAAATAGCATAG

Coding sequence (CDS)

ATGAAGGCTAGTGGACTAAGGCTAGGTACAAGCACTTTCAACACTTTGATAAAAGGATATGGCATTGCCGGTAAGCCTGAAGAAACTATAGAACTGCTGGACTTGATGTACAAAGAGGAAAATTTGAAACTCAATCTGAGAACTTGTAATGTACCCGTCAAAGCATGGTGTAAGAAGAAGAAAATAGCATAG

Protein sequence

MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKKKIA
Homology
BLAST of Bhi08G000744 vs. TAIR 10
Match: AT5G25630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-16
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKL--NLRTCNVPVKAWCK 60
           MK  GL   TST+NTLIKGYGIAGKPE + ELLDLM +E N+ +  N+RT NV V+AWCK
Sbjct: 141 MKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCK 200

Query: 61  KKKI 63
           KKK+
Sbjct: 201 KKKV 204

BLAST of Bhi08G000744 vs. TAIR 10
Match: AT5G25630.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-16
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKL--NLRTCNVPVKAWCK 60
           MK  GL   TST+NTLIKGYGIAGKPE + ELLDLM +E N+ +  N+RT NV V+AWCK
Sbjct: 141 MKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCK 200

Query: 61  KKKI 63
           KKK+
Sbjct: 201 KKKV 204

BLAST of Bhi08G000744 vs. TAIR 10
Match: AT5G21222.1 (protein kinase family protein )

HSP 1 Score: 74.3 bits (181), Expect = 3.8e-14
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
           MK SG +   STFNTLIKGYG  GK EE+  LLD+M ++E L+ N RTCN+ V+AWC ++
Sbjct: 415 MKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQR 474

Query: 61  KI 63
           KI
Sbjct: 475 KI 476

BLAST of Bhi08G000744 vs. ExPASy Swiss-Prot
Match: Q8GZ63 (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-15
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKL--NLRTCNVPVKAWCK 60
           MK  GL   TST+NTLIKGYGIAGKPE + ELLDLM +E N+ +  N+RT NV V+AWCK
Sbjct: 141 MKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCK 200

Query: 61  KKKI 63
           KKK+
Sbjct: 201 KKKV 204

BLAST of Bhi08G000744 vs. ExPASy Swiss-Prot
Match: Q8S9D1 (Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX=3702 GN=ATC401 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.4e-13
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
           MK SG +   STFNTLIKGYG  GK EE+  LLD+M ++E L+ N RTCN+ V+AWC ++
Sbjct: 415 MKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQR 474

Query: 61  KI 63
           KI
Sbjct: 475 KI 476

BLAST of Bhi08G000744 vs. ExPASy TrEMBL
Match: A0A6J1CJL5 (pentatricopeptide repeat-containing protein At5g25630 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011746 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.6e-22
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
           MKASGLR  TSTFNTLIKGYGIAGKPEETIELLDLMY+EE LK NLRTCNV V+AWCKKK
Sbjct: 98  MKASGLRPSTSTFNTLIKGYGIAGKPEETIELLDLMYREETLKPNLRTCNVLVRAWCKKK 157

Query: 61  KI 63
           KI
Sbjct: 158 KI 159

BLAST of Bhi08G000744 vs. ExPASy TrEMBL
Match: A0A6J1CHS1 (pentatricopeptide repeat-containing protein At5g25630 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011746 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.6e-22
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
           MKASGLR  TSTFNTLIKGYGIAGKPEETIELLDLMY+EE LK NLRTCNV V+AWCKKK
Sbjct: 169 MKASGLRPSTSTFNTLIKGYGIAGKPEETIELLDLMYREETLKPNLRTCNVLVRAWCKKK 228

Query: 61  KI 63
           KI
Sbjct: 229 KI 230

BLAST of Bhi08G000744 vs. ExPASy TrEMBL
Match: A0A5D3E700 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006310 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
           MKASGLR  TSTFNTLIKGYGIAGKPEET++LLDLMY+EENLK NLRTCNV V+AWCKKK
Sbjct: 168 MKASGLRPITSTFNTLIKGYGIAGKPEETVQLLDLMYREENLKPNLRTCNVLVRAWCKKK 227

Query: 61  KIA 64
           KI+
Sbjct: 228 KIS 230

BLAST of Bhi08G000744 vs. ExPASy TrEMBL
Match: A0A1S4E5M4 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g25630 OS=Cucumis melo OX=3656 GN=LOC103503718 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
           MKASGLR  TSTFNTLIKGYGIAGKPEET++LLDLMY+EENLK NLRTCNV V+AWCKKK
Sbjct: 168 MKASGLRPITSTFNTLIKGYGIAGKPEETVQLLDLMYREENLKPNLRTCNVLVRAWCKKK 227

Query: 61  KIA 64
           KI+
Sbjct: 228 KIS 230

BLAST of Bhi08G000744 vs. ExPASy TrEMBL
Match: A0A314U9Z6 (Pentatricopeptide repeat-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_29559 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-15
Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 1   MKASGLRLGTSTFNTLIKGYGIAGKPEETIELLDLMYKEENLKLNLRTCNVPVKAWCKKK 60
           MK SGL+  TST+NTLIKGYGI+GKPE++++LL++M +EEN+K N+RT NV V+AWCKKK
Sbjct: 168 MKQSGLKPTTSTYNTLIKGYGISGKPEDSLQLLEMMSQEENVKPNIRTFNVLVRAWCKKK 227

Query: 61  KI 63
            I
Sbjct: 228 NI 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G25630.12.4e-1665.63Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G25630.22.4e-1665.63Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G21222.13.8e-1458.06protein kinase family protein [more]
Match NameE-valueIdentityDescription
Q8GZ633.4e-1565.63Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX... [more]
Q8S9D15.4e-1358.06Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1CJL58.6e-2288.71pentatricopeptide repeat-containing protein At5g25630 isoform X2 OS=Momordica ch... [more]
A0A6J1CHS18.6e-2288.71pentatricopeptide repeat-containing protein At5g25630 isoform X1 OS=Momordica ch... [more]
A0A5D3E7001.1e-2185.71Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4E5M41.1e-2185.71LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g25630 OS=Cu... [more]
A0A314U9Z66.0e-1566.13Pentatricopeptide repeat-containing protein OS=Prunus yedoensis var. nudiflora O... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 10..58
e-value: 3.4E-8
score: 33.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 12..45
e-value: 9.2E-8
score: 29.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..39
score: 8.944478
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..63
e-value: 3.7E-11
score: 45.0
NoneNo IPR availablePANTHERPTHR47931OS01G0228400 PROTEINcoord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000744Bhi08M000744mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding