Chy12G213140.1 (mRNA) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCTATCATCAACCAATATTGAACTGACTGAAGCACGGCGTTATCTCCCACAATTATTGCCTTCGCTTCCAATCTTCCATGACCTTTCACCCATTATCCCGAAAATTCCTTCATTGCCTTCGTTTCCGATCGTCCCTAACCTTTCACCCATTATCCCGGAAGTTCCTTCATTGCCTTCGCTTCCAATCGTCCCTAATCTTCCACCCATTATCCCGAAAGTTCCTTCATTGCCTTCGATTCCATTCATCCCTAAGATTGCTCCACCTACTAGTATCCCGCCGATCGTTCCTTCTATTCCATCCACCGATTTGCCTCCCCTTCCTAATATTCCAGTCCCCTAATATCCCGAGCATTGATTCCACTCCCTAGTACGCACCAAATACTATTATCCATTTCCTCCTTATATTTCCCTTAAATCCAATTTGTCTCCCCTCAGTATTCCACCTTTGACAATATACTTGTGTGCGTTATCAAAGTAGTGGAGCTTCTCTAGACTGGAACTTTAAAGCATGAGGTTTCCTGGTGGAATTTTAATTGCTTCAAGTTCTTTCTAATCAGTCATGTAAGCTACTATTATCATGTAACTTTAAAAAGTCATATATTTAAATAAAAAATTACTATGAGTGAAAATTATCAGTGTTATTTTGATAACTACCAGACAAATAAAGTTAAATCGAAGGAGAACATCACACATTAATAAAACGGCTTTGGTTATACGAACCAAATCCAAAAATTTGTTTTAAATTAATCAATAAAAACAAATGCGAGAACCAAGGATTGTTTTAAATAATTAAGTTCAATCATTTTGTTGTTGTTTTTTACAATTTAACTTCTTATAGACATTACTTCCATTACTAGCTTTCTTCCTTTCTTCTTTTGTTAGTTACTTTACCAAAACTGTAAAATAAAAATTTCTTTCAACCATAAATATATAGAAAATTATCCTAAAAATAAGAAGAAATAGGACTAACCTTCAAAATTGTTACCAAACAAAACTTTAAAACTATGAAATTACTAGAGACATCAACACGAGTACTTGTGAATCTGTCAATGACCAAGTTTCAAGAATCAAAAGCCTAATCTCACAAAACTATCTAAATTGGAGGAGGGGATCTATTCCAGCCGATTACAATTTGATTCTACGAATTCAAATATGAATTATTTGATAGGTTACCATACAACCCAACTTAGCTGAACCAACTGGTATTGAAAGCCAATCTGTTGAAAAAGTCTAACAAGCTTCCGAACTATTAATTAAACTAACATTATAATTAAACTAACATTATAATTAAACTAAATGTCAATCAACTAGGCACGATAGTGTTTCATGTAAATCTAAATATTTTTATTACTCTGATCAAGTGATACTACGTTCTATAATAATTAGATATGAAGATTGATATAGAGCTGGTTTGATAATTTTTGGTTTTTCTAATTAAGCCTAAAAACAACCATTCAACCTCTAAATTCTTTGTTTATTATCTACGTTTTTACCTTGTTTCATGTTAGCTCTAAAAAGTAGCTATTTACTACGAGAATTGGGAATTTGAGAAAATATTCAAGTATTGAGACAAAAAGAAGAACTACGAGATCAGAAGATAATGACGGCAATATTTAGATTTCTGTTTTCTAGTATATTTCATTCGTACATCGTAAACATTTTAGGTTTTTATATAACATGAAACCCTAGAATGAAGAGGGGCAGAAAAGACAATTTACATGCACATGGCAGAGTTTAATTATTGAATTTTATATGAAAATTAACATGCTCGTAACACCTTTTTTTTTTCATATTGCGAATATGGCAAAATTAATGATATCAAACGGCTATAAGACAATAATCATAGGGCTATCGGAGGGCTATCACGATTATTAGCTTTTAAATTTACTATTTTTGCAATTTAGAAAATATAGTGACATGAACTTTATTATCATACATTTTTTTTTGCTATTTTTCCAAGTTCTCCAATTTTATATAACATACATAATATTCCAAGGCATCCAATCACTATCTGCTTGTCGTGTCCACTATCCCATTCCGGTGCATTTTCTAACTCCTTCGCGTCGTCGTCAAGAAGATTTTCGACTTGAAAAACACAAAGTGAGTGAGACAAGGACTTAATTAGTGTGGCAGTCAACCACTTCATCCACATTAGAACGTAACGAATTTTCAGAGCACCCAGAGAATTTGATCATGTGATATGACTTGAAATGTATGTATTTTGTCTTTTAATTTAGAATGATTTTTTTAATTTAGTTAGGTTTAATGTCATTTGTTAGTGATTTCAAAATTATGTTTGAGATGTCGATTCAAGTGGAAGAGGAGAAAAAGTCCAAGGAGTGCCAAAAACAGGGTAGCGCTGCGATGCTTGCGCAGCAATAACCTTGACGCTTCTTCATGAAATTGAATGTTCCAATAGGTTGGGAAAGAGCACCGCAGTGCTCAGTAAAAAGTGCTGCTATGCTATGTGTAACACAACGGTGTGAAGCAACAAAGGGTCATAAGCGCTATAGCGCTGACTAG ATGGGTCTATCATCAACCAATATTGAACTGACTGAAGCACGGCGTTATCTCCCACAATTATTGCCTTCGCTTCCAATCTTCCATGACCTTTCACCCATTATCCCGAAAATTCCTTCATTGCCTTCGTTTCCGATCGTCCCTAACCTTTCACCCATTATCCCGGAAGTTCCTTCATTGCCTTCGCTTCCAATCGTCCCTAATCTTCCACCCATTATCCCGAAAGTTCCTTCATTGCCTTCGATTCCATTCATCCCTAAGATTGCTCCACCTACTAGTTGGGAAAGAGCACCGCAGTGCTCAGTAAAAAGTGCTGCTATGCTATGTGTAACACAACGGTGTGAAGCAACAAAGGGTCATAAGCGCTATAGCGCTGACTAG ATGGGTCTATCATCAACCAATATTGAACTGACTGAAGCACGGCGTTATCTCCCACAATTATTGCCTTCGCTTCCAATCTTCCATGACCTTTCACCCATTATCCCGAAAATTCCTTCATTGCCTTCGTTTCCGATCGTCCCTAACCTTTCACCCATTATCCCGGAAGTTCCTTCATTGCCTTCGCTTCCAATCGTCCCTAATCTTCCACCCATTATCCCGAAAGTTCCTTCATTGCCTTCGATTCCATTCATCCCTAAGATTGCTCCACCTACTAGTTGGGAAAGAGCACCGCAGTGCTCAGTAAAAAGTGCTGCTATGCTATGTGTAACACAACGGTGTGAAGCAACAAAGGGTCATAAGCGCTATAGCGCTGACTAG MGLSSTNIELTEARRYLPQLLPSLPIFHDLSPIIPKIPSLPSFPIVPNLSPIIPEVPSLPSLPIVPNLPPIIPKVPSLPSIPFIPKIAPPTSWERAPQCSVKSAAMLCVTQRCEATKGHKRYSAD* Homology
BLAST of Chy12G213140.1 vs. ExPASy TrEMBL
Match: A0A5D3CBA5 (Formin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2404G00010 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10 Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 0
BLAST of Chy12G213140.1 vs. ExPASy TrEMBL
Match: A0A1S4E3J0 (formin-2-like OS=Cucumis melo OX=3656 GN=LOC107991890 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10 Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 0
BLAST of Chy12G213140.1 vs. ExPASy TrEMBL
Match: A0A180H1P6 (Uncharacterized protein OS=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) OX=630390 GN=PTTG_02477 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07 Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 0
BLAST of Chy12G213140.1 vs. ExPASy TrEMBL
Match: A0A178WGX0 (Prolamin_like domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g40250 PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06 Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 0
BLAST of Chy12G213140.1 vs. ExPASy TrEMBL
Match: A0A3P9APD1 (EH domain-binding protein 1-like protein 1 OS=Esox lucius OX=8010 PE=4 SV=2) HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05 Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 0
BLAST of Chy12G213140.1 vs. NCBI nr
Match: KAE8652802.1 (hypothetical protein Csa_022842 [Cucumis sativus]) HSP 1 Score: 119 bits (297), Expect = 2.93e-29 Identity = 73/102 (71.57%), Postives = 77/102 (75.49%), Query Frame = 0
BLAST of Chy12G213140.1 vs. NCBI nr
Match: XP_016902796.1 (PREDICTED: formin-2-like [Cucumis melo] >KAA0038820.1 formin-2-like [Cucumis melo var. makuwa] >TYK08468.1 formin-2-like [Cucumis melo var. makuwa]) HSP 1 Score: 72.8 bits (177), Expect = 6.83e-13 Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 0
BLAST of Chy12G213140.1 vs. NCBI nr
Match: OAV98957.1 (hypothetical protein PTTG_02477 [Puccinia triticina 1-1 BBBD Race 1]) HSP 1 Score: 62.8 bits (151), Expect = 1.87e-08 Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of Chy12G213140.1 vs. NCBI nr
Match: KAG7648731.1 (Prolamin-like domain [Arabidopsis thaliana x Arabidopsis arenosa] >OAP17496.1 hypothetical protein AXX17_AT1G40250 [Arabidopsis thaliana]) HSP 1 Score: 59.3 bits (142), Expect = 1.45e-07 Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 0
BLAST of Chy12G213140.1 vs. NCBI nr
Match: XP_028976810.2 (titin isoform X10 [Esox lucius]) HSP 1 Score: 58.5 bits (140), Expect = 6.03e-07 Identity = 46/99 (46.46%), Postives = 59/99 (59.60%), Query Frame = 0
BLAST of Chy12G213140.1 vs. TAIR 10
Match: AT1G44224.1 (ECA1 gametogenesis related family protein ) HSP 1 Score: 58.2 bits (139), Expect = 5.7e-09 Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 0
BLAST of Chy12G213140.1 vs. TAIR 10
Match: AT5G15780.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04 Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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