Chy5G097880 (gene) Cucumber (hystrix) v1

Overview
NameChy5G097880
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH05: 10297124 .. 10300704 (+)
RNA-Seq ExpressionChy5G097880
SyntenyChy5G097880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGACATGCAGAGAGAATTTTCAATTTTCGATCGCGGTATTCATCAAACCTTCAAAAGGATTTTCCCCTTTTGATATTCTCCCAAAAATTCCCAATTTTCCCACGAAATTTGGGATTAATTTTATTTTTAGATTATAATGAAACCAATCGCTTGGATTTTCCTGCCATTCGCGTTGGTTTTGATTCAATCTCTAGTGTCAGCAGCTTCTTCATCTTCTTCTTCCGGATCACAGTCTTCCGATGAAGCTTATGTTACCCTTTTGTATGGCGATGAATTTCTTTTGGGTGTTCGAGTTCTTGGGAAATCGATTCGCGACACTGGCTCCAACAAGGACATGGTGGCCTTGATTTCTGATGGGGTTTCTGAGTATGCTAAGAGGCTACTAGAGGTTAGCTTCTAGTTTGCTTTTTGTTTCCAACAAATTCGAGCTATTACTACAACTTATCCACGAGTACTTCTCTTTGTTTTTTTTCTTTTCTTCTGAAATTATAGTCTTGAAGTTAAATCTGTTGGATACTTCGAATTCAACGTATATGTTGATTTATTCTGCAAGTGTGTGGATCCTTATATAATTAGAGTAATTAGTGATCCTTTGAATGGAGATAAGGGAGATTTCTTGAGCACTTTCCCCCCACTGGCTGATAACTTAATGGAAATGGGAGTATCTGCGATGAAAAATAGTTTGATAGTAGAAGTCTGTGGAGAACGCCTACTTAGAACATTCTAATTTTAAGTGTAATCTAACGACCAAATTGTTGTGGAGTTGACAGGTCTAACTTTGAGATTAGTTTGTGTGAACAAGGTATCCTAAACATTTACAACTATCAAATTTAGAAATTTTTTGAAAGTGTTGAATTAAAATCCCTCCTCCGTGATCTGTTCCGATGTGAATAATGGATGTATGACCTCATTTTATCTGATTTTCTTTAGGAGTTCAGGTGTGCATGCGTCTCTGCCCTGTCTCTTCCTGATCGGTGTGGGCATGTTAAGTAGAATCATACCTAGAGGGGAGGAACATAATGTCCTTGAAGGTTACAAAGTTGGTAGGGATAGTTCGCAGTGAAAAGTCATTTTTTAACTTGAATACATCCAATAAAAACCCTTGGAAAGGCATCGTTGAGGAGTTTCCTTGGTCCTCTCTTTTTGTTAGTTGCTCAGTTGTGGATGAGAGGAACATTTTTTTCTGGGAGGATAAGCAGTTGGGGATAATCTTCTTTCCTCTTTGTTTCCTTGTTTATTCTAGTCATCCTTGTTGACAAACCACTTGGTTGTAGTTGTTTTGATTTTGGCTTAACTTATGTCCTCTCGTTTATTGAGGTTATAACGTGCTTTGTTCAATGGGGAAACATCAAACATTGTCCCTTGCTCGATTGTCCTCATGTAAAGATGGGGAAACCCTAAGCACCTAAAGGTGATTACAAAAAAAGCGTCAATTGGAAACTAAGACAGTTAAGCTAAAGTTCATAAAAGGGTGCCCAATTTTGCACCAATAAAAAGCCGTGGACAATAAATGTCAAAAAGAAATAAAAGAGGAAAAGGAGTTGTGAAAGAGACGCCTATTTTGATCGCCCCATAATATCCAAAAGTAAGCCCGAATAATAGCCAGCAAAATACTCTCCTTGCAACCAAAAACTTGAGCATGTCAAAATATTGTTGGAAAGAGCTGTAGACCAACCAAAAACTTCCAAAATGAGATCCCAAGACGTTTCTTCTAGGAATTCAATTCACAATCATTCCAAGAGAAGATCCTGATTGGATAGCCTCGGAACCCTTCCTATTGTCTAAAGATGATGTTTTATCATAACAAATTGATGATCGAAGAGTTTGTAATTTCCTTTGAAGTTTATTTCGTTTGTTGTTGTCAGTGCAAGGCTTCTTAGCCTTTGTTAGGGGAAGAGAAGGGATGGCCATGACACATAAACCGCGTTGCAATAAAATAGAAGCCATATCACGAAGGCTGATTGGGTTGGCTGTAGATGAAGATGGAATGTCACCAGGTGATGGTTTTGTCAAAGGGATAGATTGTTGTATTGGACTGTGCAAATCAGTTGGGACTGGGGTAGGATAGGAAGTGGGAGATTTGATTCTTTGGGATTTCCCCCCAAAACAGCTGCTTCCAACGTATGAGTGACAAATCATCTTTTTGAGAGATGGGCTGGTAAGGTAGCTTCCGAGTCAGAGAATGTTTGTGGCTGATTTTTTGGAGTTGCCATGTGTTTTGATCCTTCCCGCAAGTTGGAAAAACCATTTTGAAAAGTAACCATTGCCATTGATGGCTGATTAAAAGAAGGTGAAGGGGATTTTGTGGGGCCCAAGAGGATATTAGGAAAGGTCAATGCGGGTGTATGGGAGGGAAATGTGTCATGAGAAGAATTATTTTCCACCAGATTAGGAAAATCTGTTGAAAGTTCAAATGGCTGAGAATCCGGGGAATGTGAGTAAATCGGCTGGTTTAATAAGGAAACAGTAGGTGATTTTTCTTTTCTTTCTTTTTTTTTTTTCGTGTGGATGCCCTAAATTCATAACTGTCGAATTAACTTCCATATGTGCTGCTGTCGGTTCTGTGGAGTCCTTCACCGCCCCATTAGATTTCGCCGCCATTGTCCCCAATTGGTTTGTGGTGTCGGAACGTTGACCACACAAATATTCACTATAATTTCTGATCCACCAAGCTTCTTTGGTAGAATCAGATGAGCGGGTATGAGACCATGATTGTTTGTATTAACCTTCAACCTAGCAGCTTGTAGATTTAATCCTCTATCAGTTTGGTTGAAGCTTCCAATAAATCTCCACAATGGTTACCACTGAACTGGAAAATCTGCTCATTCCATAAAATTGGTGGGAGGTCAAAAACATCAATCCAACCTCCATAAGATGCAGTTTGCTGGCAAAGATATGAAGAAATAAGAGATGCATCAAGAAACGTAGGTTGAATTTCCGAATCAATTCCCAGTCCTCATGGCTGTATAAGAATTGAGCAACCGTAGTATCATAAACATGTATGAGGGTCTTGTTGTCAAGGAAGGGATTGATTGTGCACCGAGATGAGAATGTCAATTGTATAGCTTCGCATATTTCCAGCCAGGAGTCTTGGAGTTGTTGGCGTTGGATCACAACCATAGATTTCCAATCAGTGTGGGGGGAGAGCTTTGATCAATTCTGTTGGGAATAAGCTTGACCACTTCATTTTTTGATGGTTCGTTGGGTTGTGATTGTGCCGCCGCCTTGTAGGTTTTAGTTGGAGGTGGGGAGGGGGCAGTCATAATCTGAGAGAAGGGAGTAAAAGAAGAACCATCCTTGTTTATTTTCCTCCGATGGAATAAAGAGTTTCGTCCGCCATCCTGAGTGGTATAGGAGTGTGAATTCAACAATGTATCCATTTTTGTTGTGTAGTTTTTCCAGCTAGAAGGTTGCTCCATTATCAATCCAAGAATTTTTTGAAGAATTTGTAGTTGAAGGGTTCATAGAATAATATATGGAAGGAGGAAGACAGCCAAGAAAGGGCTTTCCAAGAAATGCAAATGGATTGTGATGAAGTTTTCCCTTTCTCTGATAATTTCACAAGTTGGCCATTACTAG

mRNA sequence

GTCCTTCACCGCCCCATTAGATTTCGCCGCCATTGTCCCCAATTGTTTGGTTGAAGCTTCCAATAAATCTCCACAATGGTTACCACTGAACTGGAAAATCTGCTCATTCCATAAAATTGGTGGGAGGGTTCATAGAATAATATATGGAAGGAGGAAGACAGCCAAGAAAGGGCTTTCCAAGAAATGCAAATGGATTGTGATGAAGTTTTCCCTTTCTCTGATAATTTCACAAGTTGGCCATTACTAG

Coding sequence (CDS)

GTCCTTCACCGCCCCATTAGATTTCGCCGCCATTGTCCCCAATTGTTTGGTTGAAGCTTCCAATAAATCTCCACAATGGTTACCACTGAACTGGAAAATCTGCTCATTCCATAAAATTGGTGGGAGGGTTCATAGAATAATATATGGAAGGAGGAAGACAGCCAAGAAAGGGCTTTCCAAGAAATGCAAATGGATTGTGATGAAGTTTTCCCTTTCTCTGATAATTTCACAAGTTGGCCATTACTAG

Protein sequence

VLHRPIRFRRHCPQLFG*SFQ*ISTMVTTELENLLIP*NWWEGS*NNIWKEEDSQERAFQEMQMDCDEVFPFSDNFTSWPLLX
Homology
[Close]
BLAST of Chy5G097880 vs. NCBI nr
Match: TYK27244.1 (inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 5.48e-04
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 0 

Query: 62 MQMDCDEVFPFSDNFTSWPLL 82
          MQMDCDEVFPFS NFTSWPLL
Sbjct: 1  MQMDCDEVFPFSANFTSWPLL 21

The following BLAST results are available for this feature:
BLAST of Chy5G097880 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G097880 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G097880 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27244.15.48e-0495.24inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo var. makuwa][more]
BLAST of Chy5G097880 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G097880.1Chy5G097880.1mRNA