Chy5G097880.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy5G097880.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH05: 10297124 .. 10300704 (+)
Sequence length247
RNA-Seq ExpressionChy5G097880.1
SyntenyChy5G097880.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGACATGCAGAGAGAATTTTCAATTTTCGATCGCGGTATTCATCAAACCTTCAAAAGGATTTTCCCCTTTTGATATTCTCCCAAAAATTCCCAATTTTCCCACGAAATTTGGGATTAATTTTATTTTTAGATTATAATGAAACCAATCGCTTGGATTTTCCTGCCATTCGCGTTGGTTTTGATTCAATCTCTAGTGTCAGCAGCTTCTTCATCTTCTTCTTCCGGATCACAGTCTTCCGATGAAGCTTATGTTACCCTTTTGTATGGCGATGAATTTCTTTTGGGTGTTCGAGTTCTTGGGAAATCGATTCGCGACACTGGCTCCAACAAGGACATGGTGGCCTTGATTTCTGATGGGGTTTCTGAGTATGCTAAGAGGCTACTAGAGGTTAGCTTCTAGTTTGCTTTTTGTTTCCAACAAATTCGAGCTATTACTACAACTTATCCACGAGTACTTCTCTTTGTTTTTTTTCTTTTCTTCTGAAATTATAGTCTTGAAGTTAAATCTGTTGGATACTTCGAATTCAACGTATATGTTGATTTATTCTGCAAGTGTGTGGATCCTTATATAATTAGAGTAATTAGTGATCCTTTGAATGGAGATAAGGGAGATTTCTTGAGCACTTTCCCCCCACTGGCTGATAACTTAATGGAAATGGGAGTATCTGCGATGAAAAATAGTTTGATAGTAGAAGTCTGTGGAGAACGCCTACTTAGAACATTCTAATTTTAAGTGTAATCTAACGACCAAATTGTTGTGGAGTTGACAGGTCTAACTTTGAGATTAGTTTGTGTGAACAAGGTATCCTAAACATTTACAACTATCAAATTTAGAAATTTTTTGAAAGTGTTGAATTAAAATCCCTCCTCCGTGATCTGTTCCGATGTGAATAATGGATGTATGACCTCATTTTATCTGATTTTCTTTAGGAGTTCAGGTGTGCATGCGTCTCTGCCCTGTCTCTTCCTGATCGGTGTGGGCATGTTAAGTAGAATCATACCTAGAGGGGAGGAACATAATGTCCTTGAAGGTTACAAAGTTGGTAGGGATAGTTCGCAGTGAAAAGTCATTTTTTAACTTGAATACATCCAATAAAAACCCTTGGAAAGGCATCGTTGAGGAGTTTCCTTGGTCCTCTCTTTTTGTTAGTTGCTCAGTTGTGGATGAGAGGAACATTTTTTTCTGGGAGGATAAGCAGTTGGGGATAATCTTCTTTCCTCTTTGTTTCCTTGTTTATTCTAGTCATCCTTGTTGACAAACCACTTGGTTGTAGTTGTTTTGATTTTGGCTTAACTTATGTCCTCTCGTTTATTGAGGTTATAACGTGCTTTGTTCAATGGGGAAACATCAAACATTGTCCCTTGCTCGATTGTCCTCATGTAAAGATGGGGAAACCCTAAGCACCTAAAGGTGATTACAAAAAAAGCGTCAATTGGAAACTAAGACAGTTAAGCTAAAGTTCATAAAAGGGTGCCCAATTTTGCACCAATAAAAAGCCGTGGACAATAAATGTCAAAAAGAAATAAAAGAGGAAAAGGAGTTGTGAAAGAGACGCCTATTTTGATCGCCCCATAATATCCAAAAGTAAGCCCGAATAATAGCCAGCAAAATACTCTCCTTGCAACCAAAAACTTGAGCATGTCAAAATATTGTTGGAAAGAGCTGTAGACCAACCAAAAACTTCCAAAATGAGATCCCAAGACGTTTCTTCTAGGAATTCAATTCACAATCATTCCAAGAGAAGATCCTGATTGGATAGCCTCGGAACCCTTCCTATTGTCTAAAGATGATGTTTTATCATAACAAATTGATGATCGAAGAGTTTGTAATTTCCTTTGAAGTTTATTTCGTTTGTTGTTGTCAGTGCAAGGCTTCTTAGCCTTTGTTAGGGGAAGAGAAGGGATGGCCATGACACATAAACCGCGTTGCAATAAAATAGAAGCCATATCACGAAGGCTGATTGGGTTGGCTGTAGATGAAGATGGAATGTCACCAGGTGATGGTTTTGTCAAAGGGATAGATTGTTGTATTGGACTGTGCAAATCAGTTGGGACTGGGGTAGGATAGGAAGTGGGAGATTTGATTCTTTGGGATTTCCCCCCAAAACAGCTGCTTCCAACGTATGAGTGACAAATCATCTTTTTGAGAGATGGGCTGGTAAGGTAGCTTCCGAGTCAGAGAATGTTTGTGGCTGATTTTTTGGAGTTGCCATGTGTTTTGATCCTTCCCGCAAGTTGGAAAAACCATTTTGAAAAGTAACCATTGCCATTGATGGCTGATTAAAAGAAGGTGAAGGGGATTTTGTGGGGCCCAAGAGGATATTAGGAAAGGTCAATGCGGGTGTATGGGAGGGAAATGTGTCATGAGAAGAATTATTTTCCACCAGATTAGGAAAATCTGTTGAAAGTTCAAATGGCTGAGAATCCGGGGAATGTGAGTAAATCGGCTGGTTTAATAAGGAAACAGTAGGTGATTTTTCTTTTCTTTCTTTTTTTTTTTTCGTGTGGATGCCCTAAATTCATAACTGTCGAATTAACTTCCATATGTGCTGCTGTCGGTTCTGTGGAGTCCTTCACCGCCCCATTAGATTTCGCCGCCATTGTCCCCAATTGGTTTGTGGTGTCGGAACGTTGACCACACAAATATTCACTATAATTTCTGATCCACCAAGCTTCTTTGGTAGAATCAGATGAGCGGGTATGAGACCATGATTGTTTGTATTAACCTTCAACCTAGCAGCTTGTAGATTTAATCCTCTATCAGTTTGGTTGAAGCTTCCAATAAATCTCCACAATGGTTACCACTGAACTGGAAAATCTGCTCATTCCATAAAATTGGTGGGAGGTCAAAAACATCAATCCAACCTCCATAAGATGCAGTTTGCTGGCAAAGATATGAAGAAATAAGAGATGCATCAAGAAACGTAGGTTGAATTTCCGAATCAATTCCCAGTCCTCATGGCTGTATAAGAATTGAGCAACCGTAGTATCATAAACATGTATGAGGGTCTTGTTGTCAAGGAAGGGATTGATTGTGCACCGAGATGAGAATGTCAATTGTATAGCTTCGCATATTTCCAGCCAGGAGTCTTGGAGTTGTTGGCGTTGGATCACAACCATAGATTTCCAATCAGTGTGGGGGGAGAGCTTTGATCAATTCTGTTGGGAATAAGCTTGACCACTTCATTTTTTGATGGTTCGTTGGGTTGTGATTGTGCCGCCGCCTTGTAGGTTTTAGTTGGAGGTGGGGAGGGGGCAGTCATAATCTGAGAGAAGGGAGTAAAAGAAGAACCATCCTTGTTTATTTTCCTCCGATGGAATAAAGAGTTTCGTCCGCCATCCTGAGTGGTATAGGAGTGTGAATTCAACAATGTATCCATTTTTGTTGTGTAGTTTTTCCAGCTAGAAGGTTGCTCCATTATCAATCCAAGAATTTTTTGAAGAATTTGTAGTTGAAGGGTTCATAGAATAATATATGGAAGGAGGAAGACAGCCAAGAAAGGGCTTTCCAAGAAATGCAAATGGATTGTGATGAAGTTTTCCCTTTCTCTGATAATTTCACAAGTTGGCCATTACTAG

mRNA sequence

GTCCTTCACCGCCCCATTAGATTTCGCCGCCATTGTCCCCAATTGTTTGGTTGAAGCTTCCAATAAATCTCCACAATGGTTACCACTGAACTGGAAAATCTGCTCATTCCATAAAATTGGTGGGAGGGTTCATAGAATAATATATGGAAGGAGGAAGACAGCCAAGAAAGGGCTTTCCAAGAAATGCAAATGGATTGTGATGAAGTTTTCCCTTTCTCTGATAATTTCACAAGTTGGCCATTACTAG

Coding sequence (CDS)

GTCCTTCACCGCCCCATTAGATTTCGCCGCCATTGTCCCCAATTGTTTGGTTGAAGCTTCCAATAAATCTCCACAATGGTTACCACTGAACTGGAAAATCTGCTCATTCCATAAAATTGGTGGGAGGGTTCATAGAATAATATATGGAAGGAGGAAGACAGCCAAGAAAGGGCTTTCCAAGAAATGCAAATGGATTGTGATGAAGTTTTCCCTTTCTCTGATAATTTCACAAGTTGGCCATTACTAG

Protein sequence

VLHRPIRFRRHCPQLFG*SFQ*ISTMVTTELENLLIP*NWWEGS*NNIWKEEDSQERAFQEMQMDCDEVFPFSDNFTSWPLLX
Homology
[Close]
BLAST of Chy5G097880.1 vs. NCBI nr
Match: TYK27244.1 (inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 5.48e-04
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 0 

Query: 62 MQMDCDEVFPFSDNFTSWPLL 82
          MQMDCDEVFPFS NFTSWPLL
Sbjct: 1  MQMDCDEVFPFSANFTSWPLL 21

The following BLAST results are available for this feature:
BLAST of Chy5G097880.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G097880.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G097880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27244.15.48e-0495.24inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo var. makuwa][more]
BLAST of Chy5G097880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy5G097880Chy5G097880gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy5G097880.1.exon1Chy5G097880.1.exon1exon
Chy5G097880.1.exon2Chy5G097880.1.exon2exon
Chy5G097880.1.exon3Chy5G097880.1.exon3exon
Chy5G097880.1.exon4Chy5G097880.1.exon4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy5G097880.1.cds1Chy5G097880.1.cds1CDS
Chy5G097880.1.cds2Chy5G097880.1.cds2CDS
Chy5G097880.1.cds3Chy5G097880.1.cds3CDS
Chy5G097880.1.cds4Chy5G097880.1.cds4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy5G097880.1Chy5G097880.1-proteinpolypeptide