CmaCh10G010530 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G010530
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionLate embryogenesis abundant D-like protein
LocationCma_Chr10: 6512736 .. 6513097 (-)
RNA-Seq ExpressionCmaCh10G010530
SyntenyCmaCh10G010530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTAACTTAGCATTTCAAATTACTTTTCTCTTTGATATTGTCCACTTTAAGATAAACTAAGCTAAAAGCTTAAAAAGCTTAAGATCATTTTCTAAATTAGTTAAAGTTGGGAGTTAGGATGCTCGATAGAAGTTGCCAGTGGATAACCGGTTACGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCTCCATGGCGGCCGCCGCTAGGCTGAACGAGACCAACAACTAG

mRNA sequence

ATGAAGAAGTTGCCAGTGGATAACCGGTTACGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCTCCATGGCGGCCGCCGCTAGGCTGAACGAGACCAACAACTAG

Coding sequence (CDS)

ATGAAGAAGTTGCCAGTGGATAACCGGTTACGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCTCCATGGCGGCCGCCGCTAGGCTGAACGAGACCAACAACTAG

Protein sequence

MKKLPVDNRLRRKMRRRWPELRCEMTRFSRHILRVLPPQDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN
Homology
[Close]
BLAST of CmaCh10G010530 vs. ExPASy Swiss-Prot
Match: Q8GWT7 (Late embryogenesis abundant protein 47 OS=Arabidopsis thaliana OX=3702 GN=At5g27980 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.8e-08
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNET 76
           +DAE V GAEMRNDP LTT+PTGVAAS+AAAAR+N++
Sbjct: 155 KDAEGVTGAEMRNDPHLTTYPTGVAASVAAAARINQS 191

[Close]
BLAST of CmaCh10G010530 vs. ExPASy Swiss-Prot
Match: P09444 (Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum OX=3635 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-07
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           QDAE V  AE+RN+P + THP GVAASMAAAARLNE  N
Sbjct: 225 QDAEGVVSAELRNNPNVATHPGGVAASMAAAARLNENVN 263

[Close]
BLAST of CmaCh10G010530 vs. ExPASy Swiss-Prot
Match: Q9LJ97 (Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana OX=3702 GN=RAB28 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-06
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           QDAE V  AE+RN+P L+THP GVAAS+ AAARLNE
Sbjct: 223 QDAEGVVSAELRNNPNLSTHPGGVAASITAAARLNE 258

[Close]
BLAST of CmaCh10G010530 vs. ExPASy Swiss-Prot
Match: Q9LJ95 (Late embryogenesis abundant protein 32 OS=Arabidopsis thaliana OX=3702 GN=ECP31 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 34  RVLPPQDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           R +  +DAE V  AEMRN+P L THP GVAAS+  AARLNE
Sbjct: 212 RAVTREDAEGVVSAEMRNNPKLCTHPGGVAASLTVAARLNE 252

[Close]
BLAST of CmaCh10G010530 vs. ExPASy TrEMBL
Match: A0A6J1EY17 (late embryogenesis abundant protein D-34-like OS=Cucurbita moschata OX=3662 GN=LOC111439748 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 224 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 261

[Close]
BLAST of CmaCh10G010530 vs. ExPASy TrEMBL
Match: M5W349 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G337900 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-08
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 225 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 263

[Close]
BLAST of CmaCh10G010530 vs. ExPASy TrEMBL
Match: A0A6J5VAS3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS40924 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-08
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 247 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 285

[Close]
BLAST of CmaCh10G010530 vs. ExPASy TrEMBL
Match: A0A5E4EG81 (PREDICTED: late OS=Prunus dulcis OX=3755 GN=ALMOND_2B021666 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-08
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 247 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 285

[Close]
BLAST of CmaCh10G010530 vs. ExPASy TrEMBL
Match: A0A5E4ED30 (PREDICTED: late OS=Prunus dulcis OX=3755 GN=ALMOND_2B021666 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-08
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 225 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 263

[Close]
BLAST of CmaCh10G010530 vs. NCBI nr
Match: XP_022933046.1 (late embryogenesis abundant protein D-34-like [Cucurbita moschata])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 224 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 261

[Close]
BLAST of CmaCh10G010530 vs. NCBI nr
Match: XP_023516606.1 (late embryogenesis abundant protein D-34-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 225 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 262

[Close]
BLAST of CmaCh10G010530 vs. NCBI nr
Match: KAG6590337.1 (Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 224 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 261

[Close]
BLAST of CmaCh10G010530 vs. NCBI nr
Match: KAG7023924.1 (Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 224 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 261

[Close]
BLAST of CmaCh10G010530 vs. NCBI nr
Match: CAB4285173.1 (unnamed protein product [Prunus armeniaca] >CAB4315983.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 247 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 285

[Close]
BLAST of CmaCh10G010530 vs. TAIR 10
Match: AT5G27980.1 (Seed maturation protein )

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-09
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNET 76
           +DAE V GAEMRNDP LTT+PTGVAAS+AAAAR+N++
Sbjct: 155 KDAEGVTGAEMRNDPHLTTYPTGVAASVAAAARINQS 191

[Close]
BLAST of CmaCh10G010530 vs. TAIR 10
Match: AT3G22490.1 (Seed maturation protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           QDAE V  AE+RN+P L+THP GVAAS+ AAARLNE
Sbjct: 223 QDAEGVVSAELRNNPNLSTHPGGVAASITAAARLNE 258

[Close]
BLAST of CmaCh10G010530 vs. TAIR 10
Match: AT3G22500.1 (Seed maturation protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 34  RVLPPQDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           R +  +DAE V  AEMRN+P L THP GVAAS+  AARLNE
Sbjct: 212 RAVTREDAEGVVSAEMRNNPKLCTHPGGVAASLTVAARLNE 252

[Close]
BLAST of CmaCh10G010530 vs. TAIR 10
Match: AT1G03120.1 (responsive to abscisic acid 28 )

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 34  RVLPPQDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           +V+  +DAE V GAE+R+   + T P GVA SM+A ARLN+
Sbjct: 140 KVVTSEDAEAVVGAELRSSSEMKTTPGGVADSMSAGARLNQ 180

The following BLAST results are available for this feature:
BLAST of CmaCh10G010530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GWT73.8e-0875.68Late embryogenesis abundant protein 47 OS=Arabidopsis thaliana OX=3702 GN=At5g27... [more]
P094444.2e-0771.79Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum OX=3635 PE=3 SV=1[more]
Q9LJ971.6e-0672.22Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana OX=3702 GN=RAB28 ... [more]
Q9LJ952.7e-0663.41Late embryogenesis abundant protein 32 OS=Arabidopsis thaliana OX=3702 GN=ECP31 ... [more]
BLAST of CmaCh10G010530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EY175.4e-1094.74late embryogenesis abundant protein D-34-like OS=Cucurbita moschata OX=3662 GN=L... [more]
M5W3495.1e-0882.05Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G337900 PE=3 SV=1[more]
A0A6J5VAS35.1e-0882.05Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS40924 PE=3 S... [more]
A0A5E4EG815.1e-0882.05PREDICTED: late OS=Prunus dulcis OX=3755 GN=ALMOND_2B021666 PE=3 SV=1[more]
A0A5E4ED305.1e-0882.05PREDICTED: late OS=Prunus dulcis OX=3755 GN=ALMOND_2B021666 PE=3 SV=1[more]
BLAST of CmaCh10G010530 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933046.11.1e-0994.74late embryogenesis abundant protein D-34-like [Cucurbita moschata][more]
XP_023516606.11.1e-0994.74late embryogenesis abundant protein D-34-like [Cucurbita pepo subsp. pepo][more]
KAG6590337.11.1e-0994.74Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. s... [more]
KAG7023924.11.1e-0994.74Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. a... [more]
CAB4285173.11.1e-0782.05unnamed protein product [Prunus armeniaca] >CAB4315983.1 unnamed protein product... [more]
BLAST of CmaCh10G010530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27980.12.7e-0975.68Seed maturation protein [more]
AT3G22490.11.1e-0772.22Seed maturation protein [more]
AT3G22500.11.9e-0763.41Seed maturation protein [more]
AT1G03120.12.0e-0451.22responsive to abscisic acid 28 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007011Late embryogenesis abundant protein, SMP subgroup domainPFAMPF04927SMPcoord: 38..74
e-value: 3.5E-12
score: 46.6
NoneNo IPR availablePANTHERPTHR31174:SF34LATE EMBRYOGENESIS ABUNDANT PROTEIN 47coord: 39..76
IPR042971Late embryogenesis abundant protein, SMP subgroupPANTHERPTHR31174SEED MATURATION FAMILY PROTEINcoord: 39..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G010530.1CmaCh10G010530.1mRNA