CmaCh10G010530.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G010530.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Late embryogenesis abundant D-like protein
Location	Cma_Chr10: 6512736 .. 6513097 (-)
Sequence length	234
RNA-Seq Expression	CmaCh10G010530.1
Synteny	CmaCh10G010530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTAACTTAGCATTTCAAATTACTTTTCTCTTTGATATTGTCCACTTTAAGATAAACTAAGCTAAAAGCTTAAAAAGCTTAAGATCATTTTCTAAATTAGTTAAAGTTGGGAGTTAGGATGCTCGATAGAAGTTGCCAGTGGATAACCGGTTACGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCTCCATGGCGGCCGCCGCTAGGCTGAACGAGACCAACAACTAG

mRNA sequence

ATGAAGAAGTTGCCAGTGGATAACCGGTTACGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCTCCATGGCGGCCGCCGCTAGGCTGAACGAGACCAACAACTAG

Coding sequence (CDS)

ATGAAGAAGTTGCCAGTGGATAACCGGTTACGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCGCAAGATGCGGAGAAGGTGGCCGGAGCTGAGATGCGAAATGACCCGCTTCTCACGACACATCCTACGGGTGTTGCCGCCTCCATGGCGGCCGCCGCTAGGCTGAACGAGACCAACAACTAG

Protein sequence

MKKLPVDNRLRRKMRRRWPELRCEMTRFSRHILRVLPPQDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN

Homology

[Close]

BLAST of CmaCh10G010530.1 vs. ExPASy Swiss-Prot
Match: Q8GWT7 (Late embryogenesis abundant protein 47 OS=Arabidopsis thaliana OX=3702 GN=At5g27980 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.8e-08
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNET 76
           +DAE V GAEMRNDP LTT+PTGVAAS+AAAAR+N++
Sbjct: 155 KDAEGVTGAEMRNDPHLTTYPTGVAASVAAAARINQS 191

[Close]

BLAST of CmaCh10G010530.1 vs. ExPASy Swiss-Prot
Match: P09444 (Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum OX=3635 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-07
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           QDAE V  AE+RN+P + THP GVAASMAAAARLNE  N
Sbjct: 225 QDAEGVVSAELRNNPNVATHPGGVAASMAAAARLNENVN 263

[Close]

BLAST of CmaCh10G010530.1 vs. ExPASy Swiss-Prot
Match: Q9LJ97 (Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana OX=3702 GN=RAB28 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-06
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           QDAE V  AE+RN+P L+THP GVAAS+ AAARLNE
Sbjct: 223 QDAEGVVSAELRNNPNLSTHPGGVAASITAAARLNE 258

[Close]

BLAST of CmaCh10G010530.1 vs. ExPASy Swiss-Prot
Match: Q9LJ95 (Late embryogenesis abundant protein 32 OS=Arabidopsis thaliana OX=3702 GN=ECP31 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 34  RVLPPQDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           R +  +DAE V  AEMRN+P L THP GVAAS+  AARLNE
Sbjct: 212 RAVTREDAEGVVSAEMRNNPKLCTHPGGVAASLTVAARLNE 252

[Close]

BLAST of CmaCh10G010530.1 vs. ExPASy TrEMBL
Match: A0A6J1EY17 (late embryogenesis abundant protein D-34-like OS=Cucurbita moschata OX=3662 GN=LOC111439748 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 224 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 261

[Close]

BLAST of CmaCh10G010530.1 vs. ExPASy TrEMBL
Match: M5W349 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G337900 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-08
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 225 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 263

[Close]

BLAST of CmaCh10G010530.1 vs. ExPASy TrEMBL
Match: A0A6J5VAS3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS40924 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-08
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 247 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 285

[Close]

BLAST of CmaCh10G010530.1 vs. ExPASy TrEMBL
Match: A0A5E4EG81 (PREDICTED: late OS=Prunus dulcis OX=3755 GN=ALMOND_2B021666 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-08
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 247 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 285

[Close]

BLAST of CmaCh10G010530.1 vs. ExPASy TrEMBL
Match: A0A5E4ED30 (PREDICTED: late OS=Prunus dulcis OX=3755 GN=ALMOND_2B021666 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-08
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 225 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 263

[Close]

BLAST of CmaCh10G010530.1 vs. NCBI nr
Match: XP_022933046.1 (late embryogenesis abundant protein D-34-like [Cucurbita moschata])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 224 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 261

[Close]

BLAST of CmaCh10G010530.1 vs. NCBI nr
Match: XP_023516606.1 (late embryogenesis abundant protein D-34-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 225 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 262

[Close]

BLAST of CmaCh10G010530.1 vs. NCBI nr
Match: KAG6590337.1 (Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 224 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 261

[Close]

BLAST of CmaCh10G010530.1 vs. NCBI nr
Match: KAG7023924.1 (Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETN 77
           QDAEKVAGAEMRNDPLLTTHPTGVAAS+AAAARLNE N
Sbjct: 224 QDAEKVAGAEMRNDPLLTTHPTGVAASVAAAARLNENN 261

[Close]

BLAST of CmaCh10G010530.1 vs. NCBI nr
Match: CAB4285173.1 (unnamed protein product [Prunus armeniaca] >CAB4315983.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNETNN 78
           +DAE V GAEMRNDP LTTHPTGVAAS+AAAARLN+TN+
Sbjct: 247 RDAEGVTGAEMRNDPFLTTHPTGVAASVAAAARLNQTNS 285

[Close]

BLAST of CmaCh10G010530.1 vs. TAIR 10
Match: AT5G27980.1 (Seed maturation protein )

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-09
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNET 76
           +DAE V GAEMRNDP LTT+PTGVAAS+AAAAR+N++
Sbjct: 155 KDAEGVTGAEMRNDPHLTTYPTGVAASVAAAARINQS 191

[Close]

BLAST of CmaCh10G010530.1 vs. TAIR 10
Match: AT3G22490.1 (Seed maturation protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 39  QDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           QDAE V  AE+RN+P L+THP GVAAS+ AAARLNE
Sbjct: 223 QDAEGVVSAELRNNPNLSTHPGGVAASITAAARLNE 258

[Close]

BLAST of CmaCh10G010530.1 vs. TAIR 10
Match: AT3G22500.1 (Seed maturation protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 34  RVLPPQDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           R +  +DAE V  AEMRN+P L THP GVAAS+  AARLNE
Sbjct: 212 RAVTREDAEGVVSAEMRNNPKLCTHPGGVAASLTVAARLNE 252

[Close]

BLAST of CmaCh10G010530.1 vs. TAIR 10
Match: AT1G03120.1 (responsive to abscisic acid 28 )

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 34  RVLPPQDAEKVAGAEMRNDPLLTTHPTGVAASMAAAARLNE 75
           +V+  +DAE V GAE+R+   + T P GVA SM+A ARLN+
Sbjct: 140 KVVTSEDAEAVVGAELRSSSEMKTTPGGVADSMSAGARLNQ 180

The following BLAST results are available for this feature:

BLAST of CmaCh10G010530.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWT7	3.8e-08	75.68	Late embryogenesis abundant protein 47 OS=Arabidopsis thaliana OX=3702 GN=At5g27...	[more]
P09444	4.2e-07	71.79	Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum OX=3635 PE=3 SV=1	[more]
Q9LJ97	1.6e-06	72.22	Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana OX=3702 GN=RAB28 ...	[more]
Q9LJ95	2.7e-06	63.41	Late embryogenesis abundant protein 32 OS=Arabidopsis thaliana OX=3702 GN=ECP31 ...	[more]

BLAST of CmaCh10G010530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY17	5.4e-10	94.74	late embryogenesis abundant protein D-34-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
M5W349	5.1e-08	82.05	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G337900 PE=3 SV=1	[more]
A0A6J5VAS3	5.1e-08	82.05	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS40924 PE=3 S...	[more]
A0A5E4EG81	5.1e-08	82.05	PREDICTED: late OS=Prunus dulcis OX=3755 GN=ALMOND_2B021666 PE=3 SV=1	[more]
A0A5E4ED30	5.1e-08	82.05	PREDICTED: late OS=Prunus dulcis OX=3755 GN=ALMOND_2B021666 PE=3 SV=1	[more]

BLAST of CmaCh10G010530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933046.1	1.1e-09	94.74	late embryogenesis abundant protein D-34-like [Cucurbita moschata]	[more]
XP_023516606.1	1.1e-09	94.74	late embryogenesis abundant protein D-34-like [Cucurbita pepo subsp. pepo]	[more]
KAG6590337.1	1.1e-09	94.74	Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. s...	[more]
KAG7023924.1	1.1e-09	94.74	Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. a...	[more]
CAB4285173.1	1.1e-07	82.05	unnamed protein product [Prunus armeniaca] >CAB4315983.1 unnamed protein product...	[more]

BLAST of CmaCh10G010530.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27980.1	2.7e-09	75.68	Seed maturation protein	[more]
AT3G22490.1	1.1e-07	72.22	Seed maturation protein	[more]
AT3G22500.1	1.9e-07	63.41	Seed maturation protein	[more]
AT1G03120.1	2.0e-04	51.22	responsive to abscisic acid 28	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007011	Late embryogenesis abundant protein, SMP subgroup domain	PFAM	PF04927	SMP	coord: 38..74 e-value: 3.5E-12 score: 46.6
None	No IPR available	PANTHER	PTHR31174:SF34	LATE EMBRYOGENESIS ABUNDANT PROTEIN 47	coord: 39..76
IPR042971	Late embryogenesis abundant protein, SMP subgroup	PANTHER	PTHR31174	SEED MATURATION FAMILY PROTEIN	coord: 39..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G010530	CmaCh10G010530	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G010530.1:exon:3085	CmaCh10G010530.1:exon:3085	exon
CmaCh10G010530.1:exon:3084	CmaCh10G010530.1:exon:3084	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G010530.1:cds	CmaCh10G010530.1:cds_2	CDS
CmaCh10G010530.1:cds	CmaCh10G010530.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G010530.1	CmaCh10G010530.1-protein	polypeptide