Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCAACAATCGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTTAACTTTTTCAAATTCAGAAGAGGTAGAAAGGAAGATCACAGCGACCATAGTGGCTGTTGGGACGAGATGCCAAGATCGAGTAAGGTATGGCCGAGCGATGAGGACAAAATGCATCGTTGGGTTGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTATATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCTGCCTGTGACACAAAACTCAATTAG mRNA sequence
ATGGGAGGCAACAATCGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTTAACTTTTTCAAATTCAGAAGAGGTAGAAAGGAAGATCACAGCGACCATAGTGGCTGTTGGGACGAGATGCCAAGATCGAGTAAGGTATGGCCGAGCGATGAGGACAAAATGCATCGTTGGGTTGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTATATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCTGCCTGTGACACAAAACTCAATTAG Coding sequence (CDS)
ATGGGAGGCAACAATCGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTTAACTTTTTCAAATTCAGAAGAGGTAGAAAGGAAGATCACAGCGACCATAGTGGCTGTTGGGACGAGATGCCAAGATCGAGTAAGGTATGGCCGAGCGATGAGGACAAAATGCATCGTTGGGTTGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTATATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCTGCCTGTGACACAAAACTCAATTAG Protein sequence
MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHSDHSGCWDEMPRSSKVWPSDEDKMHRWVAEPGIDRKAKDYIDRIYRNRVLESERQTVTLPACDTKLN
Homology
BLAST of CmaCh09G012740 vs. TAIR 10
Match:
AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 0
Query: 1 MGGNNRSKKAHSS--FSIFNFFKFRRGRKEDHSDHSGCWDEMPRSSKVWPSDEDKMHRWV 60 MGG NRS HSS FS+F+FFK RR + + G WD+ + K SDEDK + WV Sbjct: 1 MGGKNRS---HSSKRFSLFSFFKTRRSHR---VEADGSWDDFGYTRKAMASDEDKRY-WV 60 Query: 61 AEPGIDRKAKDYIDRIYRNRVLESERQTVT 89 AEPGIDRKA +I + + RV ESERQT++ Sbjct: 61 AEPGIDRKASAFIAKFHATRVSESERQTLS 83
BLAST of CmaCh09G012740 vs. TAIR 10
Match:
AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 64.7 bits (156), Expect = 4.7e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0
Query: 37 WDEMPRSSKVWPSDEDKMHRWVAEPGIDRKAKDYIDRIYRNRVLESERQTVTLPACDT 95 WD++ + K W SDEDK + WVAEPGIDRKA +I + + +RV ESERQ TLP C + Sbjct: 17 WDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQ--TLPPCQS 71
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
AT3G05858.1 1.6e-14 51.11 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.1 4.7e-11 55.17 unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
A T G G G A G G C A A C A A T C G G T C G A A G A A A G C T C A C T C A T C T T T C T C G A T C T T T A A C T T T T T C A A A T T C A G A A G A G G T A G A A A G G A A G A T C A C A G C G A C C A T A G T G G C T G T T G G G A C G A G A T G C C A A G A T C G A G T A A G G T A T G G C C G A G C G A T G A G G A C A A A A T G C A T C G T T G G G T T G C T G A A C C T G G C A T T G A T A G A A A A G C T A A G G A T T A T A T T G A C A G G A T C T A T C G A A A C C G T G T T C T T G A A T C T G A G C G A C A A A C T G T T A C T T T A C C T G C C T G T G A C A C A A A A C T C A A T T A G 50 100 150 200 250 Score = Score = Sequence PTHR33511:SF17 PTHR33511
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PANTHER PTHR33511:SF17 RIBOSOMAL PROTEIN S12 coord: 1..88
None No IPR available PANTHER PTHR33511 OS06G0632400 PROTEIN coord: 1..88
Relationships
The following mRNA feature(s) are a part of this gene: